BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22110.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479726 jgi|Araly1|479726|fgenesh2_kg.3__2427__AT3G22110.1 1360 0.0
Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1 159 3e-38
> Ahg479726 jgi|Araly1|479726|fgenesh2_kg.3__2427__AT3G22110.1
Length=1002
Score = 1360 bits (736), Expect = 0.0
Identities = 809/845 (96%), Gaps = 1/845 (0%)
Strand=Plus/Plus
Query 152 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCCGGTTCTGCGATTG 211
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 158 GTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCTGGTTCTGCAATTG 217
Query 212 GAATCTTATCCAAAGACGGTGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCAAAGCTTC 271
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 218 GAATCTTATCCAAAGACGGAGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCTAAGCTTC 277
Query 272 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTG 337
Query 332 TTGCTGGTATAATGTCTGATGCTAACATACTTATCAACACGGCTCGAGTTCAAGCTCAAC 391
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 338 TTGCTGGTATAATGTCTGATGCTAACATACTCATCAACACGGCACGAGTCCAAGCTCAAC 397
Query 392 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTTTGTG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 GTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTCTGTG 457
Query 452 ACACAAAACAAGGATACACACAGTTTGGTGGTCTTCGCCCGTTTGGTGTCTCCTTTCTCT 511
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 458 ACACAAAACAAGGCTACACACAATTCGGTGGTCTTCGCCCATTTGGTGTCTCCTTTCTCT 517
Query 512 TTGCAGGATGGGACAAGCACCATGGTTTCCAGCTTTATATGAGTGACCCGAGTGGGAACT 571
||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||
Sbjct 518 TTGCAGGATGGGACAAGAACTATGGGTTCCAGCTATATATGAGTGACCCGAGTGGGAACT 577
Query 572 ATGGTGGTTGGAAAGCTGCAGCTGTTGGAGCAAACAATCAGGCGGCTCAGTCTATCCTGA 631
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 578 ATGGTGGTTGGAAAGCTGCAGCTGTTGGGGCAAACAATCAGGCGGCTCAGTCTATTCTGA 637
Query 632 AACAAGACTACAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTTGCCTTGAAGGTTC 691
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 638 AACAAGACTATAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTCGCCTTGAAGGTTC 697
Query 692 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAAGTGT 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 698 TGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAGGTGT 757
Query 752 ATCTGACTCCATCCAAGACTGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAAC 811
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 758 ATCTGACTCCATCCGGGAATGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAGC 817
Query 812 TGTTGGTCAAGCACGGTGTGACTCAACCCGCTGCTGAAACATCTTAAGCCCAAAAGTATC 871
||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||| |||
Sbjct 818 TGTTGGTCAAGCATGGTGTGACTCAACCGGCTGCTGAAACATCCTGAGCTCAAAAGAATC 877
Query 872 TCTAGTCTT-ATTCGCCTGGTACGGTGTCTCCGCTTTATGTTTGTAGTTCTCTGTTTTAC 930
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 878 TCTAGTCTTTATTCGCCTGGTACGGTGTCTCGGCTCTATGTTTGTAGTTCTCTGTTTTAC 937
Query 931 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTACCTTTGGCGATGAAACTAGATTTGACAAT 990
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 938 AGCTTTCCTTTTGGTTTGAACTTTGAAGTTAACTATGGCGATGAAACTAGATTTGACAAT 997
Query 991 GTTAT 995
|||||
Sbjct 998 GTTAT 1002
> Ahg493374 jgi|Araly1|493374|fgenesh2_kg.7__2807__AT4G15160.1
Length=1353
Score = 159 bits (86), Expect = 3e-38
Identities = 135/159 (85%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 180 GGAGGCCATTGGAAACGCCGGTTCTGCGATTGGAATCTTATCCAAAGACGGTGTTGTGTT 239
||| || ||||| || || |||||||||||||||||||| | ||||| || ||||||||
Sbjct 967 GGA-GCTATTGGCAATGCTGGTTCTGCGATTGGAATCTTGGCAAAAGATGGAGTTGTGTT 1025
Query 240 GATCGGTGAGAAGAAAGTCACCTCAAAGCTTCTTCAAACCTCAACCTCTGCTGAGAAAAT 299
| | ||||||||||||||||| || ||||| ||||||||||| | || | ||||||||
Sbjct 1026 GGTTGGTGAGAAGAAAGTCACTTCTAAGCTACTTCAAACCTCTATGTCCACGGAGAAAAT 1085
Query 300 GTACAAGATTGATGACCATGTTGCCTGTGCTGTTGCTGG 338
||||||||||||||||||||| || |||||||| |||||
Sbjct 1086 GTACAAGATTGATGACCATGTGGCTTGTGCTGTGGCTGG 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5