BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22120.1

Length=1354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930186 jgi|Araly1|930186|scaffold_302643.1                        494    9e-139


> Ahg930186 jgi|Araly1|930186|scaffold_302643.1
Length=390

 Score =  494 bits (267),  Expect = 9e-139
 Identities = 293/306 (96%), Gaps = 0/306 (0%)
 Strand=Plus/Minus

Query  715   caccacccgtagtaacaccaccaacaccaacTCCTCCTACGCCTATTCCAGAGACTTGCC  774
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  390   CACCACCCGTAGTAACACCACCAACACCAACTCCTCCTACGCCTATTCCAGAGACCTGCC  331

Query  775   CAATTGACACGCTGAAGCTAGGCGCTTGTGTGGACGTTCTTGGAGGTTTGATTCACATCG  834
             |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  330   CAATCGACACGCTGAAGCTAGGCGGTTGTGTGGACGTTCTTGGAGGTTTGATTCACATCG  271

Query  835   GACTTGGAAAAAGCCACGCCAAGGCAGAATGTTGTCCGGTTTTAGGAGGTTTACTTGACC  894
             | ||||| ||||||| |||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct  270   GGCTTGGGAAAAGCCGCGCCAAGGAAGAGTGTTGTCCGGTTTTGGGAGGTTTACTTGACC  211

Query  895   TAGACGCAGCCGTTTGTCTATGTACCACCATTAAGCTCAAACTTCTCAACATCGACCTTG  954
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  210   TAGACGCAGCCGTGTGTCTATGTACCACCATTAAGCTCAAACTTCTCAACATCGACCTTA  151

Query  955   TTCTCCCCATTGCTCTTGAGCTTCTTCTCGACTGTGGAAAAACTCCACCATCTGACTTCA  1014
             |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  150   TTCTCCCCATTGCTCTTGAGCTTCTTCTCGACTGTGGAAAAACTCCACCACCTGGCTTCA  91

Query  1015  AATGTC  1020
             ||||||
Sbjct  90    AATGTC  85


 Score =  122 bits (66),  Expect = 5e-27
 Identities = 78/84 (93%), Gaps = 0/84 (0%)
 Strand=Plus/Minus

Query  1097  TCATGATCTATTTGGTAATGGGAGGTTAATCTGCATATGTGCGACCTTTAGTTACATGTT  1156
             ||||||||| |||| |||||||||||| || ||| | |||||||||||||||||||||||
Sbjct  84    TCATGATCTCTTTGCTAATGGGAGGTTGATTTGCGTGTGTGCGACCTTTAGTTACATGTT  25

Query  1157  TCATTTGATACAATAAAAGGCGTT  1180
             ||||||||||||||||||||||||
Sbjct  24    TCATTTGATACAATAAAAGGCGTT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50665356693


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5