BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22160.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930189 jgi|Araly1|930189|scaffold_302646.1 1027 0.0
> Ahg930189 jgi|Araly1|930189|scaffold_302646.1
Length=624
Score = 1027 bits (556), Expect = 0.0
Identities = 605/628 (96%), Gaps = 6/628 (1%)
Strand=Plus/Plus
Query 236 TCTTGTCTT-TAGACACACACAAAAATGGCTAACCCCAACGAGTGGTCTCAGTTCTACAA 294
|||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTT-TCTTGTAGACACA-A-AAAAATGGCTAACCCCAACGAGTGGTCTCAGTTCTACAA 57
Query 295 CAATAACCAAACCTTCTTCACAACTTCTACCACCGCTTCAACCGCTGTTACAACCACCAC 354
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 58 CAATAACCAAACCTTCTTCACAACTTCCACCACCGCATCAACCGCTGTCACAACCACCAC 117
Query 355 TGCCGGTGATACCACCTCCATAGACTCTCGTCTGAGTCCAGAAACTGGCCGTGTAACCAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGCCGGTGATACCACCTCCATAGACTCTCGTCTGAGTCCAGAAACTGGCCGTGTAACCAA 177
Query 415 GCCAACACGTAGAAGGTCCAGAGCCTCACGTAGAACACCAACAACGCTTCTCAACACCGA 474
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCCAACACGTAGAAGATCCAGAGCCTCACGTAGAACACCAACAACGCTTCTCAACACCGA 237
Query 475 CACTTCCAACTTCCGTGCCATGGTTCAGCAATACACTGGCGGTCCATCCGCTATGGCTTT 534
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 CACGTCCAACTTCCGTGCCATGGTTCAGCAATACACTGGCGGACCATCCGCTATGGCTTT 297
Query 535 CGGGTCCGGTAATACTACTTCTGCTTTTAGCCTCACTTCATCGTCGGATCCATCAGCTGG 594
||||||||||| ||||||||||| ||| |||||||| |||||||| ||||||||||||||
Sbjct 298 CGGGTCCGGTAGTACTACTTCTGGTTTCAGCCTCACCTCATCGTCAGATCCATCAGCTGG 357
Query 595 ATCTTCTCAACAAGCTCCT-TGGCAATATAATTTCCAGCCTCACGCGCCGCTTCAGCCAC 653
||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 358 ATCTTCTCAACAAGCTC-TATGGCAATATAATTTCCAGCCTCACGCGCCGCTGCAGCCAC 416
Query 654 CGCAACGGCCTTACATGTTTTCTTTGAACAACGTGAATCCCGTGGTTGGATATAGTAACA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCAACGGCCTTACATGTTTTCTTTGAACAACGTGAATCCCGTGGTTGGATATAGTAACA 476
Query 714 TGAACAACCCTAATACGATGGTTTCCGGTGTGTTTGGGACGGTGGATGGTTCTGGTGGAG 773
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGAACAACCCTAATACGGTGGTTTCCGGTGTGTTTGGGACGGTGGATGGTTCTGGTGGAG 536
Query 774 GAGGTTCTGCTCCGTCGTCAAAGGAGGCTACGAATAGTAATTCTTCTTCTTCGAGGTTGC 833
|||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |
Sbjct 537 GAGGTTCTGCACCGTCGTCTAAGGAGGCTACGAATAGTAATACTTCTTCTTCGAGGTTCC 596
Query 834 AATGAGAAAACGATTGGATTCTTTTTGA 861
||||||||||||||||||||||||||||
Sbjct 597 AATGAGAAAACGATTGGATTCTTTTTGA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5