BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22180.1
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479732 jgi|Araly1|479732|fgenesh2_kg.3__2433__AT3G22180.1 3860 0.0
Ahg946828 jgi|Araly1|946828|scaffold_703057.1 1258 0.0
Ahg343509 jgi|Araly1|343509|fgenesh1_pg.C_scaffold_3003272 287 3e-76
Ahg945138 jgi|Araly1|945138|scaffold_701367.1 209 7e-53
> Ahg479732 jgi|Araly1|479732|fgenesh2_kg.3__2433__AT3G22180.1
Length=2555
Score = 3860 bits (2090), Expect = 0.0
Identities = 2436/2595 (94%), Gaps = 55/2595 (2%)
Strand=Plus/Plus
Query 1 GAGAGACGATATTTTCTCAGTC-C-CTTTCCCTTTTCAACGAGCAACAACACTCTTCACT 58
||||| |||||||||||||||| | |||||| ||||| |||||||||||||||||||||
Sbjct 1 GAGAGGCGATATTTTCTCAGTCTCTCTTTCCTTTTTCCGCGAGCAACAACACTCTTCACT 60
Query 59 TAATCGCTCCGGCGGTGGCGAACGGCAACGTGACGGTGACGTTGTCGGAAAATTAGAGTT 118
||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||
Sbjct 61 TAATCACTCCGGCGGTGGCG-ACGGCAACGTGACGGAGACGTTGTCGTAAAATTAGGGTT 119
Query 119 TGT-TTATCTTTGCTTATTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCA 177
| | || || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TATCTT-TCCTGGCTTATTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCA 178
Query 178 ACTTCCCGCTCACACTCTTCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACTTCCCGCTCACACTCTTCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGC 238
Query 238 TTTCTATGCTTTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCTATGCTTTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGG 298
Query 298 TGTTTACTCTCCCGTGGCTATTCTTGTGTTTGTTTTGTATGTTCGGTGTACTGCAATCAA 357
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 TGTTTACTCTCCTGTGGCTATTCTTGTGCTTGTTTTGTATGTTCGGTGTACTGCAATCAA 358
Query 358 TCCTGCGGATCCGAGAATCATGTCGATATTTGATACAGGCGTGAATGGAGATGGCATGGT 417
|||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 359 TCCTGCGGATCCAAGGATCATGTCGATATTTGATACAGGCGTGAACAGAGATGATATGGT 418
Query 418 TCGTGGCTTATCAAGGAATTATGATGAAACTGGTAGTCAGTTGCAGGCTTCTCCTTCGGT 477
| ||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 419 TGGTGCCTTATCGAGGAATTTTGATGAAGCTGGTAGTCAGTTGCAGGCTTCTCCTTCAGT 478
Query 478 TGTCAGTAGGAGTTCTACCGTGGCTGGAAACTCTAGTGTGAAAGGTTCTGTAGAAGATGC 537
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 479 TGTCAGCAGGAGTTCTACCGTAGCAGGAAACTCTAGTGTGAAAGGTTCTGTAGAAGATTC 538
Query 538 TCAAAGAGTGGAATCTGTAAGTAGAAGATCTTGCTATAATCCTCTGGC-AGTTTTCTGTT 596
|||||||||||||||||| || |||||||||||||||||||||||||| | | |||||||
Sbjct 539 TCAAAGAGTGGAATCTGTGAGAAGAAGATCTTGCTATAATCCTCTGGCTA-TCTTCTGTT 597
Query 597 ATGTGTTTGTTGTGGAAGACTGCCGGAAAA-AGGAAGGGCCGGCGGAAGAACAAGGAAAC 655
| ||||||||| ||||||||||||| |||| |||||||| |||||||| || ||||||||
Sbjct 598 ACGTGTTTGTTTTGGAAGACTGCCG-AAAACAGGAAGGGGCGGCGGAACAAGAAGGAAAC 656
Query 656 AGCGAAGAGGCTCTGTTTTGCACATTGTGCAATTGTGAGGTACGCAAGTTCAGCAAGCAT 715
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 AGCGAAGAGGCTCTGTTTTGCACATTGTGCAATTCTGAGGTACGCAAGTTCAGCAAGCAT 716
Query 716 TGTCGAAGTTGTGATAAATGTGTTGATTGTTTTGATCACCATTGCAAGTGGCTTAACAAT 775
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 TGTCGGAGTTGTGATAAATGTGTTGACTGTTTTGATCACCATTGCAAGTGGCTTAACAAT 776
Query 776 TGTGTCGGTCGTAAAAACTATGTGACTTTTGTCTCTCTGATGAGTGCCAGTCTTCTCTGG 835
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCGTCGGTCGTAAAAACTACGTGACTTTTGTCTCTCTGATGAGTGCCAGTCTTCTCTGG 836
Query 836 CTCATTATTGAAGCAGCAGTTGGAATTGCAGTTATAGTGCGTGTATTTGTTAATAAGCAG 895
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 CTCATTATTGAAGCAGCAGTTGGAATTGCAGTCATAGTGCGTGTATTTGTTAATAAGCAG 896
Query 896 ACCATGGAAACTGAAATTGTCAATAGACTTGGAAATAGTTTCTCTCGTGCACCTTTGGCG 955
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 AGCATGGAAACTGAAATTGTCAATAGACTTGGAAATAGTTTCTCTCGTGCCCCTTTGGCG 956
Query 956 GCAGTTGTTGGTCTTTGCACTGCTGTTGCCATTTTCGCATGTTTTCCACTGGGTGAACTT 1015
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 957 GCAGTTGTTGGTCTTTGCACTGCTGTTGCCATTTTGGCATGTTTTCCACTGGGTGAACTT 1016
Query 1016 CTCTTTTTCCACATGCTTCTCATTAAAAAGGGAATTACAACATATGAGTATGTTGTGGCA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTCTTTTTCCACATGCTTCTCATTAAAAAGGGAATTACAACATATGAGTATGTTGTGGCA 1076
Query 1076 ATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGAAATTCAGAATGTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGAAATTCAGAATGTG 1136
Query 1136 CTCTATTCTCCCACTGGGTCTGCTACAACCGGCTTTAGTGGTGGAAGCTCTCTCGGTTTA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCTATTCTCCCACTGGGTCTGCTACAACCGGCTTTAGTGGTGGAAGCTCTCTCGGTTTA 1196
Query 1196 CCATACAGGGGGGTCTGGTGCACTCCACCTAGAGTGTTTGATAATCAGGATGAAGTCATT 1255
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CCATACAAGGGGGTCTGGTGCACTCCACCTAGAGTGTTTGATAATCAGGATGAAGTCATT 1256
Query 1256 CCTCATTTAGACCCTTGCATGGTCCCGTCAACCGTAGACCCAGATGCACCTGGATCAGAG 1315
|| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1257 CCCCATTTAGACCCTCGCATGGTCCCGTCGACCGTAGATCCAGATGCACCTGGATCAGAG 1316
Query 1316 AAAGGCACTAAGGCTCTGAAAAGACCTGTAAAACGTAATGCATGGAAGCTTGCAAAGTTG 1375
|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1317 AAAGGCACCAAGGCTCTGAAAAGACCTGTCAAACGTAGTGCATGGAAGCTTGCAAAGTTG 1376
Query 1376 GATCCAAATGAAGCTGCAAGGGCAGCTGCCAGAGCCAGAGCGTCATCATCTGTCCTAAGA 1435
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GATCCAAATGAAGCTGCAAGAGCAGCTGCCAGAGCCAGAGCGTCATCATCTGTCCTAAGA 1436
Query 1436 CCGATAGATAATCGCCATTTACCTGATAATGATCTTAGTTCCATTGGCACAGTTAGTATC 1495
|| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 1437 CCAATAGATAATCGCCATTTACCTGATAGTGAACTTAGTTCCATTGGCACACTTAGTATC 1496
Query 1496 ATCAGTAGTGTAAGCACAGATGCAAATGTGGCTGCAAGTAAAGAGATAAGGAACAATGAT 1555
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1497 ATCAGTAGTGTAAGCACAGATGCAAATGTGGCTGCAAATAAAGAGATAAGGAACAATGAT 1556
Query 1556 CTAAGGTCATCTCTTTCTAGAAACTCGTTTGCTCCAAGCCAAGGTAGCCGGGATGAGTAT 1615
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1557 CTAATGTCATCTCTTTCTAGAAACTCCTTTGCTCCAAGCCAAAGTAGCCGGGATGAGTAT 1616
Query 1616 GACACAGGGAGCCATGGTATGAGCAATCTTAGCAGTCCAAGCCATGTTCACGAGTCTGTC 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GACACAGGGAGCCATGGTATGAGCAATCTTAGCAGTCCAAGCCATGTTCACGAGTCTGTC 1676
Query 1676 ACACTTGCTCCACTCCCTCAAAATCCTACAATAGTTGGCAATCGCTTCACTGCAACAAGC 1735
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 1677 ACACTTGCTCCGCTCCCTCAGAATCCTACAATAGTCGGCAATCGCTTCACTGCAACAAAC 1736
Query 1736 CATCACATGCACTCGACCTTTGATGATAAGGTTCTGCACAGAGGAAACGACGCGGATCCG 1795
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1737 CACCACATGCACTCAACCTTTGATGATAAGGTGCTGCACAGAGGAAACGACGCGGATCCA 1796
Query 1796 CTATTTCTCTTTGCTCCTGCAACTTCTCATCTGAGGGATGTGAGAAAGACATCAGTTGTT 1855
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CTATTTCTCTCTGCTCCTGCAACTTCTCATCTGAGGGATGTGAGAAAGACATCAGTTGTT 1856
Query 1856 TGGGATCCAGAAGCTGGGAGATATGTATCAGCTCCTGTAACAACAACATCTGAAGTCCGC 1915
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1857 TGGGATCCAGAAGCTGGGAGATATGTATCAGCTCCTGTAACGACAACATCTGAGGTCCGC 1916
Query 1916 AACAGATTGCTAAATCCTAGCTCACAAACAGCCAGCACTCAGAATCCAAGACCCATTCTT 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AACAGATTGCTAAATCCTAGCTCACAAACAGCCAGCACTCAGAATCCAAGACCCATTCTT 1976
Query 1976 CCAGCTCATGATTCTTCTTCTGGATCATCAGCACTAAGGGATCCTCTTCCTCTGCACCAA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1977 CCAGCTCATGATTCTTCTTCTGGATCATCAGCACTAAGGGATCCTCTTCCTATGCACCAA 2036
Query 2036 GCCGAGAGAAGACTGACATATACAGGTGACTCTATCTTTTATGGAGGCCCTTTGATTAAT 2095
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2037 GCCGAGAGAAGACTGACATATACAGGTGACTCTATCTTCTATGGAGGCCCACTGATTAAT 2096
Query 2096 ATTCCGACTAGAGATACCCCGAGAAGCGGAAGGGGCTTGGTAAGAGATGTACAAGACAGA 2155
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2097 ATTCCGACTAGAGATACCCCGAGAAGCGGAAGGGGCTTGGTAAGAGAGGTACAAGACAGA 2156
Query 2156 TTGGCATCAACAGTTCATCGAGATGCAAGAATT-AGAAGGGATTCAACCTCAAACCAGCT 2214
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 2157 TTGGCATCAACAGTTCATCGAGATGCAAGA-TTCAGAAAGGATTCAACCTCAAACCAGCT 2215
Query 2215 TCCGGTGTTTGCCCCTGGAGGTCTTGGGGCAAACTCCCAAACCGGTTCTAACATCAAGTA 2274
||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 2216 TCCCGTGTTTGCCCCTGGAGGTCTTGGTACAAATTCC------GGTTCTAACATCAAGTA 2269
Query 2275 GATACACTGATTGTATTTCTTGAAAGGCTCTGATCTTCTACAAAACGTCTTCCCAATTCC 2334
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2270 GATACACCGACTGTATTTCTTGAAAGGCTCTGATCTTCTACAAAACACCTTCCCAATTCC 2329
Query 2335 TGGAGAGGCTCATTATCCATGGGTTCTTTGCTGTGTTGCCGGAACTCTATGAGGATTAAA 2394
|||||||||||| ||| ||||| ||| |||||||| | | | | | || | |
Sbjct 2330 TGGAGAGGCTCAAAATCAATGGGGTCTGTGCTGTGT-GA-GCA--T-T--GA--A--A-- 2376
Query 2395 GTTTGAGTTTCTGAGTCACTGGAATTTGTGCGAAGTTCCCAGTCATTTTTCAGTGTTAGA 2454
|||||||||| | ||||||||||||||||||| | ||||||| ||| || |
Sbjct 2377 -TTTGAGTTTC-----C--TGGAATTTGTGCGAAGTTCGCGGTCATTTCTCAACGT-A-- 2425
Query 2455 GTAGGACTAATTTTCTTACAATGGATTT-GAGCTTC-TT-GTAAA-CCTGAAATGTCATC 2510
|||||||||||||||| || ||||||| ||| ||| || | ||| || ||||||||||
Sbjct 2426 -TAGGACTAATTTTCTTGCA-TGGATTTTGAG-TTCCTTTG-AAATCCA-AAATGTCATC 2480
Query 2511 AATATTGATTCTTCCAGAAAA-----CCATTCATGTAAATTCTTCTTTCACTTATCTCTG 2565
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2481 ACTTTTGATTCTTCCAGAAAAGAAAACCATTCATGTAAATTCTTCTTTCACTTATCTCTG 2540
Query 2566 CATTTTCATTTCTAG 2580
|||||||||||||||
Sbjct 2541 CATTTTCATTTCTAG 2555
> Ahg946828 jgi|Araly1|946828|scaffold_703057.1
Length=2196
Score = 1258 bits (681), Expect = 0.0
Identities = 1326/1627 (81%), Gaps = 86/1627 (5%)
Strand=Plus/Plus
Query 155 ATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCAC-ACTCTTCAGGTGATTGCAATTAC 213
||||| |||||||| |||||||||||||| |||||| | | |||||||| |||| |||||
Sbjct 23 ATGGTTAGGAAACATGGTTGGCAACTTCCTGCTCACAAAT-TTCAGGTGGTTGCGATTAC 81
Query 214 GGTGTTTTGCTTGTTG-GTGGTCGCTTTCTATGC-TTTCTTCGCTCCTTTTGTTGGAGGT 271
|||||||||||| ||| || || || | |||||| ||| || |||||||||||||||||
Sbjct 82 GGTGTTTTGCTTATTGAGT-GTTGCATACTATGCGTTT-TTTGCTCCTTTTGTTGGAGGA 139
Query 272 CGTATTTGGGAATACGTT-TTGATCGGTGTTTACTCTCCCGTGGCTATTCTTGTGTTT-G 329
|| ||||||| || || || |||||||||||||||| |||||| || |||| ||| |
Sbjct 140 CGCATTTGGGGGTATATTCTT-CTCGGTGTTTACTCTCCTGTGGCTCTTATTGT-TTTCG 197
Query 330 TT-TTGTATGTTCGGTGTACTGCAATCAATCCTGCGGATCCGAG-AATCATGTCGATATT 387
|| || ||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 198 TTCTT-TATGTTCGGTGTACTGCAATCAATCCTGCGGATCC-AGGAATCATGTCGAAATT 255
Query 388 TGATACAGGCGTGAATGGAGATGGCATGGTT--CGTG--GCT-----TATC--AAGGAA- 435
|||| || | ||| ||| || ||| || | || || |||| ||| ||
Sbjct 256 CGATAGGGGTGCGAACAGAGGTG--ATGATTTACCTGCTGCCAAAGATATCTCAAGAAAA 313
Query 436 TTATGATGAAACTGGTAGTCAGTTGCAGGCTTCTCCTTCGGTTG-T-CAGTAGGAGTTCT 493
|| |||||||| || |||||| ||||| ||||||||||||||| | | | |||| ||||
Sbjct 314 TTC-GATGAAACAGGCAGTCAGCTGCAGTCTTCTCCTTCGGTTGCTTC-G-AGGACTTCT 370
Query 494 ACCGTGGCTGGAAACTCTAGTGTGAAAGGTTCTGTAGAAGATGCTCAAAGAGTGGAATCT 553
|| | | | ||||||||| ||||| |||||||||| ||||||||||||||||||| |
Sbjct 371 ACTTTACCAGCAAACTCTAGCGTGAAGGGTTCTGTAGGAGATGCTCAAAGAGTGGAAGAT 430
Query 554 G-TAAGTAGAAGAT-CTTGCTATAATCCTCTGGCAGTTTT-CTGTTATGTGTTTGTTG-T 609
| ||| | || || |||||| ||||||| |||| | | | |||| ||||||||| |
Sbjct 431 GCTAAAAA-AA-ATTCTTGCTTTAATCCTTTGGC-GATATGCTGTGGCGTGTTTGTTTAT 487
Query 610 GGAAGACTGCCGGAA-AAAGGAAGGGCCGGCGGAAGAACAAGGAAACAGCGAAGAGGCTC 668
| |||| || || | |||| | | | ||| ||| | || || | || ||||| ||||
Sbjct 488 G-AAGATTGTCGTAGCAAAG-ATGAGACGGATGAACAGCAGGGGGATAGGGAAGAAGCTC 545
Query 669 TGTTTTGCACATTGTGCAATTG-TGAGGTACGCAAGTTCAGCAAGCATTGTCGAAGTTGT 727
|||||||||| ||||||||| | |||||| || ||||| ||||||||||||||||| ||
Sbjct 546 TGTTTTGCACGTTGTGCAAT-GCTGAGGTCCGTAAGTTTAGCAAGCATTGTCGAAGCTGC 604
Query 728 GATAAATGTGTTGATTGTTTTGATCACCATTGCAAGTGGCTTAACAATTGTGTCGGTCGT 787
|| |||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 605 GACAAATGTGTAGATTGTTTCGATCATCATTGCCGGTGGCTTAACAATTGTGTCGGTCGC 664
Query 788 AAAAACTATGTGACTTTTGTCTCTCTGATGAG-TGCCAGTCTTCTCTGGCTCATTATTGA 846
|| || ||| |||||||| | || |||||| | || |||||||||||||||| |||||||
Sbjct 665 AAGAATTATATGACTTTTATATCCCTGATG-GCTGTCAGTCTTCTCTGGCTCCTTATTGA 723
Query 847 AGCAGCAGTTGGAATTGCAGTTATAGTGCGTGTATTTGTTAATAAGCAG-ACCATGGAAA 905
||||| |||||| |||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 724 AGCAGGAGTTGGGATTGCAGTTATAGTGCGTGTGTTTGTTAATAAAAAGGAC-ATGGAAA 782
Query 906 CTGAAATTGTCAATAGACTTGGAAATAG-TTTCTCTCGTGCACCTTTGGCGGCAGTTGTT 964
| ||||| |||||||||||||||||| | ||| ||||| |||||||| || | ||||||
Sbjct 783 CCGAAATCGTCAATAGACTTGGAAATGGATTT-TCTCGGGCACCTTTTGCCACTGTTGTT 841
Query 965 GGTCTTTGCACTGCTGTTGCCATTTTCGCAT-GTTTTCCACTGGGTGAACTTCTCTTTTT 1023
||||| || ||||||||| |||| | |||| |||| ||| ||||||||||| |||||||
Sbjct 842 GGTCTCTGTACTGCTGTTTCCATGCTGGCATTGTTT-CCATTGGGTGAACTTTTCTTTTT 900
Query 1024 CCACATGCTTCTCATTAAAAAGGGAATTACAACATATGAGTATGTTGTGGCAATGAGAGC 1083
||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 901 CCACATGCTCCTCATTAAAAAGGGCATTACAACTTACGAGTATGTTGTGGCAATGAGAGC 960
Query 1084 CATGAGCGAGGCGCCAGATGGAGCATCTG-TTGACGAGGAAATTCAGAATGTGCTCTATT 1142
||||||||||| |||| |||||| || | |||| |||||| ||| || ||||| ||||
Sbjct 961 AATGAGCGAGGCACCAGCTGGAGCTTC-GATTGATGAGGAACTTCCTAACGTGCTGTATT 1019
Query 1143 CTCCCACTGGGTCTGCTACAACCGGCTTTAGTGGTGGAAGCTCTCTCGGTTTACCATACA 1202
||||| |||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1020 CTCCCTCTGGATCTGCCACGACCGGCTTTAGTGGTGGAAGCTCCCTCGGATTACCATACA 1079
Query 1203 GGGGGGTCTGGTGCACTCCACCTAGAGTGTTTGAT-A--ATCAGGATGAAGTCATTCCTC 1259
||| | |||||| ||||| ||||||||||||| | | ||||||||||||| |||||||
Sbjct 1080 AGGGAGCCTGGTGTACTCCTCCTAGAGTGTTTGTTGATTATCAGGATGAAGTGATTCCTC 1139
Query 1260 ATTTAGACCCTTGCATGGTCCCGTCAACCGTAGACCCAGATGCACCTGGA--T-CAGAGA 1316
|||| ||||| | ||||| ||||| |||||||| ||||||||| ||| | | ||||||
Sbjct 1140 ATTTGGACCCCAGAATGGTTCCGTCGACCGTAGATCCAGATGCAGCTGAAACTGCAGAGA 1199
Query 1317 AAGGCA-CTAAGGCTCTGAAA-AGACCTGT-AAAACGTAATGCATGGAAGCTTGCAAAGT 1373
|||| | ||| || ||| |||||||| |||| || ||| ||||| || ||||| |
Sbjct 1200 GGGGCAAC-AAGATTCC-AAAGAGACCTGTCAAAAT-TAGTGCTTGGAAACTCGCAAAAT 1256
Query 1374 TGGATCCAAATGAAGCTGCAAGGGCAGCTGCCAGAGCCAGAGCGTCATCATCTGTCCTAA 1433
|| || ||||||||||| |||||||||| |||||||||||||| || ||||||||| |||
Sbjct 1257 TGAATTCAAATGAAGCTACAAGGGCAGCAGCCAGAGCCAGAGCATCCTCATCTGTCTTAA 1316
Query 1434 GACCGATAGATAATCGCCATTTACCTGATAATGATCTTAGTTCCAT---TGGCAC-AGTT 1489
|||| ||||| || || ||||||| |||| |||| |||||||||| |||||| | |
Sbjct 1317 GACCAATAGAAAACCGTCATTTACATGATGATGAGCTTAGTTCCAGAAGTGGCACCA-TC 1375
Query 1490 AGTATCA-TCAGTAGTGTAAGCACAGATGCAAATGTGGCTGCA---AGTAAAGAGATAAG 1545
||| | | |||| |||||||||||||| ||||||| ||||| |||||||| |||||
Sbjct 1376 AGTGT-AGTCAGCAGTGTAAGCACAGAAGCAAATGGGGCTGTGTTGAGTAAAGAAATAAG 1434
Query 1546 GAACAATGATCTAAGGTCATCTCTTTCTAGAAACTCGTTTGCTCCAAGCCAAGGTAGCCG 1605
|||||||||| ||||| |||| |||||||||||| |||||||||||||||||||| ||
Sbjct 1435 AAACAATGATCCAAGGTTGTCTCATTCTAGAAACTCTTTTGCTCCAAGCCAAGGTAGTCG 1494
Query 1606 GGATGAGTATGACACAGGGAGCCATGGTATGAGCAATCTT-AGCAGTCCAAGCCATGTTC 1664
||| ||||| ||||| |||| |||| || |||||| | || ||||||||||| |||||||
Sbjct 1495 GGACGAGTACGACACGGGGACCCATAGTGTGAGCAGT-TTCAGCAGTCCAAGTCATGTTC 1553
Query 1665 ACGAGTCTGTCACACTT-GCTCCACT-CCCTCAAAATCCTACAATAGTTGGCAATCGCTT 1722
| ||| | ||||||||| | ||| || ||| || ||| |||| | |||| | |||||
Sbjct 1554 ATGAGACCGTCACACTTAG-TCCTCTACCC-CAGTATCATACA---GCTGGCCACCGCTT 1608
Query 1723 CACTGCA 1729
|||||||
Sbjct 1609 CACTGCA 1615
> Ahg343509 jgi|Araly1|343509|fgenesh1_pg.C_scaffold_3003272
Length=522
Score = 287 bits (155), Expect = 3e-76
Identities = 184/197 (93%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 193 TCT-TCAGGTGATTGCAA-T---TACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCT 247
||| || ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 104 TCTCTCGGGTGATTGCAATTACGTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCT 163
Query 248 TTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TTCTTCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCT 223
Query 308 CCCGTGGCTATTCTTGTGTTTGTTTTGTATGTTCGGTGTACTGCAATCAATCCTGCGGAT 367
| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 224 CATGTGGCTATTCTTGTATTTGTTTTGTATGTTCGGTGTACTGCACTCAAGCCTGCGGAT 283
Query 368 CCGAGAATCATGTCGAT 384
|| || |||||||||||
Sbjct 284 CCAAGGATCATGTCGAT 300
Score = 84.2 bits (45), Expect = 4e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 155 ATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTCTTCAG 199
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTCTTCAG 45
Score = 82.4 bits (44), Expect = 2e-14
Identities = 57/63 (90%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 1065 ATGTTGTGGCAATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAGGA-A 1123
||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | |
Sbjct 299 ATGTTGTGGCAATGAGAGCCATGAGCGAGACGCTAGATGGACCATCTGTTGATGAGAAGA 358
Query 1124 ATT 1126
|||
Sbjct 359 ATT 361
> Ahg945138 jgi|Araly1|945138|scaffold_701367.1
Length=493
Score = 209 bits (113), Expect = 7e-53
Identities = 120/123 (98%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 193 TCT-TCAGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCTTTCT 251
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTCTCGGGTGATTGCAATTACGGTGTTTTGCTTGTTGGTGGTCGCTTTCTATGCTTTCT 186
Query 252 TCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCTCCCG 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 187 TCGCTCCTTTTGTTGGAGGTCGTATTTGGGAATACGTTTTGATCGGTGTTTACTCTCCTG 246
Query 312 TGG 314
|||
Sbjct 247 TGG 249
Score = 115 bits (62), Expect = 2e-24
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 135 TTGTTGTTGGAGAAGAAGGTATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTC 194
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTGTTGTTGAAGAAGAAGGTATGGTGAGGAAACACGGTTGGCAACTTCCCGCTCACACTC 63
Query 195 TTCAG 199
|||||
Sbjct 64 TTCAG 68
Score = 87.9 bits (47), Expect = 3e-16
Identities = 56/60 (93%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 1065 ATGTTGTGGCAATGAGAGCCATGAGCGAGGCGCCAGATGGAGCATCTGTTGACGAG-GAA 1123
||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||
Sbjct 259 ATGTTGTGGCAATGAGAGCCATGAGCGAGACGCTAGATGGAGCATCTGTTGATGAGAGAA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97282485730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5