BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22190.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930194 jgi|Araly1|930194|scaffold_302651.1 1995 0.0
> Ahg930194 jgi|Araly1|930194|scaffold_302651.1
Length=1306
Score = 1995 bits (1080), Expect = 0.0
Identities = 1213/1277 (95%), Gaps = 9/1277 (1%)
Strand=Plus/Plus
Query 152 ATAGAATGGGAGCTTCAGGGAGATGGATTAAAGCATTGGTTGGTTTTACTAAATCTGATA 211
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 ATACAATGGGAGCTTCAGGGAGATGGATTAAAGCATTGGTTGGTTTTACTAAATCTGATA 75
Query 212 AGTCTAGGTCTTCCAAGAAAGATGAAAATGTGAAGGTTGC-TACCAAGAGTAGGTTTGGG 270
|||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 76 AGTCTAAGTCTTCAAAGAAAGATGAAAATGTGAAGGTTGCGT-CCAAGAGTAGGTTTGGG 134
Query 271 AGAAAGAATTCAGTTGATTTTGACTTTGA-AAAGTTTCAAGATGGATTTGAAGATTCCAA 329
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 135 AGAAAGAATTCAGTTGATTTCGACTTTGAGAAA-TTTCAAGATGGATTTGAAGAGTCCAA 193
Query 330 TACGCGTAGTATGGTTGATACTGGGGTCTCTACTTCAACTTCACTACAATCATATGGGGG 389
||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 194 TACGCGTAGTATGATTGATACTGGGGTCTCTACTTCAAATTCACTACAGTCATATGGGGG 253
Query 390 TGTTGCTTATGACGAACAAAGTAGGGAAAATCGGGCTGCAACGCGTATCCAAACGGCTTA 449
||| |||| ||| |||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 254 TGTAGCTTCTGAAGAACGTAGTAGGGAAAATCGCGCTGCAACGCGTATCCAAACAGCTTA 313
Query 450 TCGGGGATTTCTGGCTAGGAGGGCTTTACGAGCGTTGAAGGGATTGGTTAGACTTCAAGC 509
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCGGGGATTTCTGGCTAGAAGGGCTTTACGAGCGTTGAAGGGATTGGTTAGACTTCAAGC 373
Query 510 CCTTGTTAGAGGACATGCTGTGAGAAAACAAGCTGCTGTAACGCTTCGATGCATGCAAGC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CCTTGTTAGAGGACATGCTGTGAGAAAACAAGCTGCTGTAACGCTTCGATGCATGCAAGC 433
Query 570 GTTGGTAAGAGTTCAGGCTCGTGTACGCGCAAGACGTGTTCGTCTCGCCTTGGAATTGGA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTTGGTAAGAGTTCAGGCTCGTGTACGCGCAAGACGTGTTCGTCTCGCCTTGGAATTGGA 493
Query 630 AAGTGAGACGAG-TCAGCAGACACTTCAACAACAGTTAGCAGATGAAGCCCGAGTTCGAG 688
|||||| || || ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 494 AAGTGAAAC-AGGTCAGCAGACACTTCAGCAACAGCTAGCAGATGAAGCCCGAGTTCGAG 552
Query 689 AAATAGAGGAAGGTTGGTGCGATAGCATTGGATCTGTTGAACAAATTCAAGCCAAGCTGC 748
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 553 AAATAGAGGAAGGTTGGTGCGATAGCATTGGATCTGTTGAACAAATCCAAGCCAAGCTAC 612
Query 749 TAAAGAGGCAGGAAGCTGCAGCTAAGCGTGAGAGAGCGATGGCATATGCTTTGACTCACC 808
||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 613 TAAAGAGGCAGGAGGCTGCAGCTAAGCGCGAGAGGGCTATGGCATATGCTTTGACTCACC 672
Query 809 AGTGGCAGGCAGGAACTCGGCTGTTATCTGCTCACAGTGGCTTTCAACCTGACAAAAACA 868
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGTGGCAGGCAGGAACTCGGCAGTTATCTGCTCACAGTGGCTTTCAACCTGACAAAAACA 732
Query 869 ATTGGGGATGGAACTGGTTGGAAAGATGGATGGCAGTGCGTCCATGGGAGAACCGGTTTC 928
| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 733 ACTGGGGATGGAACTGGTTGGAAAGATGGATGGCTGTTCGGCCATGGGAGAACCGGTTTC 792
Query 929 TTGACAGTAACCTCAGGGATGATGCAAAATTAGGTGAAAACGGCATGGAGCAGTCTGAGA 988
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 793 TTGACAGTAACCTCAGGGATGATGCGAAATTAGGTGAAAACAGCATGGAGCAGTCTGAGA 852
Query 989 ATGTACCTAAAACGCAGATCAAAAGTGTGAGTAAGATGCCAAACACTTCAAATCTTGTAT 1048
|||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |
Sbjct 853 ATGTGCCCAAAACGCAGATGAAAAGTGTGAGCAAGATGCCAAACACGTCAAATCTTGTGT 912
Query 1049 CCGGTGTTTCAAGTCAGATGACTGGCCCGTGTCAGTCGGATGGTGATTCGTCTTCTCCTG 1108
| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 913 CTGGTATTTCAAGTCAGATGACCGGCCCATGTCAGTCGGATGGTAATTCGTCTTCTCCTG 972
Query 1109 GAATATCTTCAAGCATTCCAGTGGTATCCAAGGCTAAGTCAAAGCCAGCTAAAGACGATC 1168
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 973 GAATATCTTCAAGCATTCCAGTGGTATCCAAGGCTAAGTCAAAGCCTGCTAAAGATGATC 1032
Query 1169 TTGCTGTAGAAGTTAACTCAAGACCTGGTGCTGGTCCAAGATCACACAGCAATCCGAAAG 1228
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1033 TTGCTGTAGAAGTTAACTCAAGACCTGGTGCTGGTCCAAGATCGCACAGCAATCCGAAAG 1092
Query 1229 AAAGATCAAGAGAACCAAATCGATCTTCAAAAGAACGATTATCTCTGCCAAACAGCGGAA 1288
||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1093 AAAGATCAAGAGAGCCAAATAGATCGTCAAAGGAACGATTATCTCTGCCAAACAGTGGAA 1152
Query 1289 AATCCTTAGGATCTCAGTCAACTAAAGCCAACCGAGCAGGAAAACTCACGCCAGCATCTC 1348
|||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||
Sbjct 1153 AATCCTTAGGATCTCAGTCAGCTAAAGCCAACCGAGCA--AAA-CTCACGCCAACATCTC 1209
Query 1349 AAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGGCGCAACTCCGACCCAATAA 1408
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1210 AAAAAGTAGTGGAGGAAAAATCTGCCCAAAACCAGAGAAGACGCAACTCCGACCCAATAA 1269
Query 1409 AACAGAGGCTTGCATAG 1425
|||||||||| ||||||
Sbjct 1270 AACAGAGGCTCGCATAG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5