BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22200.2
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479734 jgi|Araly1|479734|fgenesh2_kg.3__2435__AT3G22200.1 2388 0.0
> Ahg479734 jgi|Araly1|479734|fgenesh2_kg.3__2435__AT3G22200.1
Length=1727
Score = 2388 bits (1293), Expect = 0.0
Identities = 1429/1497 (95%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 384 AGGTTCATTTGCACAGTAAGTATGCCACTTGCATGTCTGGGAACTCCACTTCCAGGAGGA 443
||||| ||||||| |||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 130 AGGTTAATTTGCAGAGTAGGCATGCCACTTGCATGTCTGGGAACTCTACTTCCAGGAGGA 189
Query 444 TTTTCACTACTGAGGCAGCACCTGAGAAGAAAAACACTGTTGGGTCTAAAGGGCATGATA 503
| ||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||
Sbjct 190 TCTTCACTACTGAGGCAGCACCTGAGAAGCTAAACTCTGTTAGGTCTAAGGGGCATGATA 249
Query 504 TGCTTGCACCTTTTACTGCTGGATGGCAGAGTGCTGATTTAGATCCCTTGGTCATTGCAA 563
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 250 TGCTTGCACCTTTTACTGCTGGCTGGCAGAGTGCTGATTTAGATCCCTTGGTCATCGCTA 309
Query 564 AGTCTGAGGGAAGTTATGTGTATGATGATACTGGGAAAAAATATCTTGACTCTCTCGCTG 623
||||||||||| ||||||||||||||| | ||||||||| |||||||| ||||| ||||
Sbjct 310 AGTCTGAGGGATGTTATGTGTATGATGCCAATGGGAAAAAGTATCTTGATTCTCTTGCTG 369
Query 624 GTTTATGGTGTACTGCCTTAGGAGGAAATGAGCCAAGGCTTGTTTCTGCCGCTGTTGAAC 683
|| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 370 GTCTATGGTGTACTGCCTTAGGAGGAAATGAGCCACGGCTTGTTTCTGCTGCTGTTGAGC 429
Query 684 AGTTGAACACCTTGCCGTTTTATCACTCCTTTTGGAACCGTACTACTAAACCTTCTCTGG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 430 AGTTGAACACCTTGCCGTTTTATCACTCCTTTTGGAACCGTACTACTAAACCTTCACTGG 489
Query 744 ATCTTGCTAAGGTTCTTTTAGAGATGTTCACGGCCAACAAAATGGCCAAAGCATTTTTTA 803
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 490 ATCTTGCTAAGGATCTTTTAGAGATGTTCACGGCCAACAAAATGACCAAAGCATTTTTTA 549
Query 804 CAAGCGGTGGATCAGATGCCAACGATACCCAGGTCAAGCTGGTTTGGTATTACAATAACG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CAAGCGGTGGATCAGATGCCAACGATACCCAGGTCAAGCTGGTTTGGTATTACAATAACG 609
Query 864 CACTTGGAAGGCCCGAGAAGAAAAAGTTTATCGCGAGAAAGAAATCGTACCATGGCTCCA 923
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 610 CACTTGGAAGGCCTGAGAAGAAAAAATTTATCGCGAGAAATAAATCGTACCATGGCTCCA 669
Query 924 CTCTAATATCAGCAAGTTTGTCCGGCCTTCCCCCGCTACACCAAAATTTTGATTTACCTG 983
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 670 CTCTAATATCAGCAAGTTTGTCCGGCCTTCCGCCGCTGCACCATAATTTTGATTTACCTG 729
Query 984 CACCATTTGTGTTGCACACAGATTGCCCTCATTATTGGCGTTTTCATCTTCCAGGCGAAA 1043
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CACCATTTGTGCTGCACACAGATTGCCCTCATTATTGGCGTTTTCATCTTCCAGGCGAAA 789
Query 1044 CGGAAGAGGAGTTCTCAACCAGATTAGCCAAGAATTTAGAGGATCTAATCATCAAAGAAG 1103
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CCGAAGAGGAGTTCTCCACCAGATTAGCCAAGAATTTAGAGGATCTAATCATCAAAGAAG 849
Query 1104 GACCAGAAACTATTGGTGCTTTTATAGCTGAACCAGTCATGGGTGCTGGGGGTGTGATAC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GACCAGAAACTATTGGTGCTTTTATAGCTGAACCAGTCATGGGTGCTGGGGGTGTGATAC 909
Query 1164 CTCCACCTGCTACCTACTTTGAAAAGGTTCAAGCTGTTGTTAAGAAATATGATATCTTGT 1223
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 910 CTCCACCTGCTACTTACTTTGAAAAGGTCCAAGCTGTTGTTAAGAAGTATGATATCTTGT 969
Query 1224 TCATTGCTGATGAGGTGATATGTGCATTTGGAAGGCTCGGGACAATGTTTGGCTGTGACA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TCATTGCTGATGAGGTGATATGTGCATTTGGAAGGCTCGGGACAATGTTTGGCTGTGACA 1029
Query 1284 AATACAACATTAAGCCAGATCTTGTGACCTTAGCTAAGGCACTGTCTTCAGCATATATGC 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AATACAACATTAAGCCAGATCTTGTGACCTTAGCTAAGGCACTGTCTTCAGCATATATGC 1089
Query 1344 CGATTGGAGCCATTCTTATGAGCCAAGAAGTGGCAGATGTCATAAATTCTCATAGCAGCA 1403
|||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||
Sbjct 1090 CGATTGGAGCCATTCTTATGAGTCAAGAAGTGGCAGATGTCATTTATTCTCAAAGCAACA 1149
Query 1404 AGCTAGGCGTTTTCTCCCATGGATTTACTTATTCTGGTCATCCAGTTTCGTGTGCTGTAG 1463
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1150 AGCTAGGCATTTTCTCGCATGGATTTACTTATTCTGGTCATCCAGTTTCATGTGCTGTAG 1209
Query 1464 CAATTGAAGCGTTAAAGATATACAAGGAGAGGAACATACCAGAGTATGTCGCCAAAGTTG 1523
|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1210 CAATCGAAGCATTAAAGATATACAAGGAGAGGAACATACCAGCGTATGTCGCCAAAGTTG 1269
Query 1524 CCCCAAGGTTTCAAGATGGAGTTAAAGCGTTTGCCTCTGGTAGTCCTATTATTGGAGAGA 1583
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 1270 CCCCAAGGTTTCAAGATGGACTTAAAGCTTTTGCCTCTAGTAGTCCTATTATTGGAGAGA 1329
Query 1584 CAAGAGGAACAGGTTTGATTCTTGGGACTGAGTTTGTAGACAATAAATCTCCGAACGAAC 1643
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1330 TAAGAGGAACAGGTTTGATTCTCGGGACTGAGTTTGTAGACAATAAATCCCCAAACGAAC 1389
Query 1644 CATTTCCACCAGAATGGGGTGTTGGCGCATTCTTTGGAGCCGAGTGCCAGAAGCACGGGA 1703
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1390 CATTTCCACCAGAATGGGGTGTTGGCGCATACTTTGGAGCCGAGTGCCAGAAGCGCGGGA 1449
Query 1704 TGTTAGTCCGTGTTGCAGGTGATGGCATTTTGATGTCTCCACCGCTCATTATCTCACCTG 1763
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1450 TGTTAGTCCGTGTTGCAGGTGATAGCATAATGATGTCTCCACCGCTCATTATCTCACCTG 1509
Query 1764 AAGAGATTGATGAGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAGG 1823
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1510 AAGAGATCGATGAGTTGATTTCTATCTATGGGAAAGCATTGAAGGCAACGGAAGAGAAAG 1569
Query 1824 TAAAAGAACTCAAGGCTCAGCACAAGAAGTGAAAAGCAGAGTCAAAATGATGTTGAT 1880
|||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1570 TAAAAGAACTCAAGACTCAGCACAAGAAGTGAGAAGCAGAGTCCAAATGATGTTGAT 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70619314230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5