BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22210.1

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930196 jgi|Araly1|930196|scaffold_302653.1                        350    9e-96
  Ahg479734 jgi|Araly1|479734|fgenesh2_kg.3__2435__AT3G22200.1         278    4e-74


> Ahg930196 jgi|Araly1|930196|scaffold_302653.1
Length=254

 Score =  350 bits (189),  Expect = 9e-96
 Identities = 228/246 (93%), Gaps = 5/246 (2%)
 Strand=Plus/Plus

Query  10   GTTTGGTTCTGAGAAGAAGAGAAGAAAATGGAAGGGATAAGCCATATCGCACTCCCTGTT  69
            |||||||||  || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    GTTTGGTTC--AG-AGAAGAGAAGAAAATGGAAGGGCTAAGCCATATCGCACTCCCTGTT  57

Query  70   CTTGGAATCGTCGCAGTCTCGGTCGTAACATTCTATGCCGTTAGCTTTGCCGAGATCAGA  129
            || ||||| || || ||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct  58   CTGGGAATTGTTGCGGTCTCTGTCGTAACCTTCTATGCCGTTAGCTTCGCTGAGATCAGA  117

Query  130  GAGAAATCGTTTAAAGATGTGTACGACTCGGAGAACGAAGTTGGGTTCAAGACTTCTCTA  189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  118  GAGAAATCGTTTAAAGATGTGTACGACTCGGAGAACGAAGTTGGGTTCAAGACTTCTCTG  177

Query  190  AGTTCAAGGGAGAGAAGATCAAAGA-GAGAAGCAAACAAAAAACGTCCTAAATCTTGATT  248
            |||||||||||||||||||||| || |||||||||| ||||||||||||  |||||||||
Sbjct  178  AGTTCAAGGGAGAGAAGATCAA-GAAGAGAAGCAAATAAAAAACGTCCTCGATCTTGATT  236

Query  249  CCAAAA  254
            ||||||
Sbjct  237  CCAAAA  242


> Ahg479734 jgi|Araly1|479734|fgenesh2_kg.3__2435__AT3G22200.1
Length=1727

 Score =  278 bits (150),  Expect = 4e-74
 Identities = 196/216 (91%), Gaps = 12/216 (6%)
 Strand=Plus/Minus

Query  384   TGTCCCATTATTGTTTATTCCTCATTAAAATGTACTTATTTAAAGACTTGTTGTGTGTTa  443
             ||||||||||||||||||| |||||||||||| ||||||| ||||||   ||||||||| 
Sbjct  1727  TGTCCCATTATTGTTTATTTCTCATTAAAATGCACTTATTAAAAGAC---TTGTGTGTT-  1672

Query  444   aaaaaaaaaaCAAAGGATCCAAACTTTGAGAATCT--AAAAAACATTTTTCATCAACATC  501
                  ||||||||| ||||||||||||||||||||  |||||||| ||||||||||||||
Sbjct  1671  -----AAAAACAAAAGATCCAAACTTTGAGAATCTAAAAAAAACA-TTTTCATCAACATC  1618

Query  502   ATTTTGACTCTGCTTTTCACTTCTTGTGCTGAGCCTTGAGTTCTTTTACCTTCTCTTCCG  561
             |||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  1617  ATTTGGACTCTGCTTCTCACTTCTTGTGCTGAGTCTTGAGTTCTTTTACTTTCTCTTCCG  1558

Query  562   TTGCCTTCAATGCTTTCCCATAGATAGAAATCAACT  597
             ||||||||||||||||||||||||||||||||||||
Sbjct  1557  TTGCCTTCAATGCTTTCCCATAGATAGAAATCAACT  1522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5