BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22230.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479736 jgi|Araly1|479736|fgenesh2_kg.3__2437__AT3G22230.1 885 0.0
Ahg493389 jgi|Araly1|493389|fgenesh2_kg.7__2822__AT4G15000.1 536 7e-152
Ahg930200 jgi|Araly1|930200|scaffold_302657.1 390 5e-108
> Ahg479736 jgi|Araly1|479736|fgenesh2_kg.3__2437__AT3G22230.1
Length=607
Score = 885 bits (479), Expect = 0.0
Identities = 570/612 (93%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 1 ATAAAGACAATCATCTCTTCAATTAGGGTTTCTTCTTTGCGGTG-GTG--AGAAACAATG 57
|||||||||||| |||| ||||||||||||||||||||||||| | | ||||||||||
Sbjct 1 ATAAAGACAATCGTCTCAACAATTAGGGTTTCTTCTTTGCGGTGTGAGAAAGAAACAATG 60
Query 58 GTGAAGTTTCTGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACGCCGGCAAA 117
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 61 GTGAAGTTTCTGAAGCAGAACAAGGCCGTGATCCTCCTTCAAGGCCGTTACGCCGGTAAG 120
Query 118 AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCGTTACGGACACTGC 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCAGTGATCATCAAATCCTTCGACGACGGAACCAGTGACCGTCGTTACGGACACTGC 180
Query 178 CTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCGAAGAAG 237
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 CTCGTCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGAAGAAG 240
Query 238 ACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCAGCATCTGATG 297
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ACGGCGAAGAAGTCTCGAGTGAAATGTTTCATCAAACTCGTGAATTACCAGCATCTGATG 300
Query 298 CCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTAGCGACTCTTGATGCTCTTAAG 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTTGCGACTCTTGATGCTCTTAAG 360
Query 358 AGTAAGGATAAGAAGGTGACTGCT-TTAAAGGAAGCTAAGGCTAAGCTTGAGGA-ACGTT 415
||||| |||||||||||||||||| |||| |||||||||||||||||||||||| | |||
Sbjct 361 AGTAAAGATAAGAAGGTGACTGCTCTTAA-GGAAGCTAAGGCTAAGCTTGAGGAGAGGTT 419
Query 416 TCAAGACTGGGAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAGAAGAACCTTTG 475
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 -CAAGACTGGCAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAGAAGAATCTTTG 478
Query 476 AGATTTTTATCT-AT--CTATCTACTTTTTGTTTAGTTCTAGAATGAATTTGGATCATTG 532
||||||| || | || ||||||| |||| ||||||||||||||| ||||||||| ||||
Sbjct 479 AGATTTT-ATTTTATAACTATCTA-TTTT-GTTTAGTTCTAGAATCAATTTGGATTATTG 535
Query 533 TTTAAGACC-TTTTGGTTTGGAATTGATTCTGGATTTTGTCTCTTACTTATAATCTTTTG 591
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 536 TTTAAGACTATTTTGGTTTGGAATTGATTCTGGATTTTGTCTTTTACTTATGATCATTTG 595
Query 592 CTATATTGATGC 603
| ||||||||||
Sbjct 596 CGATATTGATGC 607
> Ahg493389 jgi|Araly1|493389|fgenesh2_kg.7__2822__AT4G15000.1
Length=658
Score = 536 bits (290), Expect = 7e-152
Identities = 380/422 (90%), Gaps = 12/422 (3%)
Strand=Plus/Plus
Query 51 AACAATGGTGAAGTTTC-TGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACG 109
||||||||||||| ||| ||||||||||||| || |||||||| |||||||| |||||||
Sbjct 57 AACAATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGTCGTTACG 115
Query 110 CCGGCAAA-AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCG-TTA 167
|||| ||| || || || ||||||||||||||||| ||||||||| |||| ||| | ||
Sbjct 116 CCGG-AAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGAACCCGTGATCGT-GCATA 173
Query 168 CGGACACTGCCTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTC 227
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 174 CGGACACTGCCTCGTCGCCGGACTGAAGAAGTACCCAAGCAAAGTCATCCGCAAAGACTC 233
Query 228 AGCGAAGAAGACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCA 287
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct 234 AGCGAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCA 293
Query 288 GCATCTGATGCCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTAGCGACTCTTGA 347
|||||||||||||||||||||||| || || || ||||| |||||||| |||||||||||
Sbjct 294 GCATCTGATGCCTACACGTTACACACTAGACGTGGATCTCAAGGAAGTTGCGACTCTTGA 353
Query 348 TGCTCTTAAGAGTAAGGATAAGAAGGT-GACTGCT-TTAAAGGAAGCTAAGGCTAAGCTT 405
||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||||
Sbjct 354 TGCTCTTCAGAGTAAGGATAAGAAGGTTG-CTGCTCTTAA-GGAAGCTAAGGCTAAGCTT 411
Query 406 GAGGA-ACGTTTCAAGACTGGGAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAG 464
||||| | ||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 412 GAGGAGAGGTT-CAAGACTGGTAAGAACAGATGGTTCTTTACTAAGCTCAGGTTCTGAAG 470
Query 465 AA 466
||
Sbjct 471 AA 472
> Ahg930200 jgi|Araly1|930200|scaffold_302657.1
Length=307
Score = 390 bits (211), Expect = 5e-108
Identities = 250/268 (93%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 55 ATGGTGAAGTTTCTGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACGCCGGC 114
||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 22 ATGGTGAAGTTTCTG-A--AGAACAAAGCCGTGATCCTCCTTCAAGGCCGTTACGCCGG- 77
Query 115 AAA-AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGTCGTTACGGACA 173
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 78 AAAGAAGGCAGTGATCATCAAATCCTTCGACGACGGAACGAGTGACCGTCGTTACGGACA 137
Query 174 CTGCCTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCGAA 233
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 138 TTGCCTCATCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGAA 197
Query 234 GAAGACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCAGCATCT 293
||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 198 GAATACGGCGAAGAAATCTATAGTGAAATGTTTCATCAAGGTCGTGAATTACCAGCATCT 257
Query 294 GATGCCTACACGTTACACGCTCGATGTA 321
||||||||| |||||||||||||| |||
Sbjct 258 GATGCCTACTCGTTACACGCTCGA-GTA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5