BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22231.1

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930202 jgi|Araly1|930202|scaffold_302659.1                        237    6e-62
  Ahg930199 jgi|Araly1|930199|scaffold_302656.1                        200    8e-51


> Ahg930202 jgi|Araly1|930202|scaffold_302659.1
Length=251

 Score =  237 bits (128),  Expect = 6e-62
 Identities = 160/175 (91%), Gaps = 3/175 (2%)
 Strand=Plus/Plus

Query  22   TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAA  81
            ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct  3    TCCTCAGCTCCTCAAATCAGAATGACTCAATCCGAGCACAATTACTTTTCCGTGCAAAAA  62

Query  82   CCTTCAGAGACTTCATCAGGGCCGTACACAAGT-C--CGCCACCAATTGGTTATCCGACT  138
            | |||| ||| ||||||||||||| |||||||| |  |||| || |||||||||||||||
Sbjct  63   CGTTCACAGATTTCATCAGGGCCGGACACAAGTCCGTCGCCGCCGATTGGTTATCCGACT  122

Query  139  AGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCCAAGG  193
            |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct  123  AGAGATCCGGTGGTCGGTGATCCTCCGGCAGCAGCAGTGGAGACAAAGTCCAAGG  177


> Ahg930199 jgi|Araly1|930199|scaffold_302656.1
Length=301

 Score =  200 bits (108),  Expect = 8e-51
 Identities = 160/183 (87%), Gaps = 12/183 (7%)
 Strand=Plus/Plus

Query  22   TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGCGCAAAATTACTTTTCCG-T---G--  75
            |||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |   |  
Sbjct  2    TCCTCAGCTCCTCAAATCAGAATGAATCAATCCGAGCACAATGACTTTTCCGGTACAGTG  61

Query  76   CAAAAACCTTCAGAGACTTCATCAGGG-C--CGTACACAAGTCC---GCCACCAATTGGT  129
            ||||||||||||||||||||||||| | |  |||||||||||||   ||| |||||||||
Sbjct  62   CAAAAACCTTCAGAGACTTCATCAGAGTCGTCGTACACAAGTCCTCCGCCGCCAATTGGT  121

Query  130  TATCCGACTAGAGATGCGGTGGTGGGTGATCCTCCGGCAGCAGCAGTGGAGACAAACTCC  189
            ||||||||||||||||||||||| |||||||||||||||| ||||  |||||| || |||
Sbjct  122  TATCCGACTAGAGATGCGGTGGTCGGTGATCCTCCGGCAGTAGCAACGGAGACTAAGTCC  181

Query  190  AAG  192
            |||
Sbjct  182  AAG  184



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19879061869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5