BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22240.1

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905254 jgi|Araly1|905254|Al_scaffold_0003_2382                    361    4e-99


> Ahg905254 jgi|Araly1|905254|Al_scaffold_0003_2382
Length=219

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 211/219 (96%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  145  ATGAATCCATCCGAGCAGAATCACTTGTCCGTGGAAAAACCTTCACAGACTTCTTCGGGG  204
            ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct  1    ATGAATCCATCCGAGCAAAATCACTTTTCCGTGGAAAAACCTTCACAAACTTCGTCGGGG  60

Query  205  CCGTACACAAGTCCACCACCGATTGGTTATCCGACCAGAGATGCGATGGTTGGTGATCCT  264
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCGTACACAAGCCCACCACCGATTGGTTATCCGACCAGAGATGCGATGGTTGGTGATCCT  120

Query  265  CCAGCCGCCGCAGTGGAGACAAAGTCCAAGGGCGATGGTTTTTGGAAAGGATGTTGTGCT  324
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCAGCCGCTGCAGTGGAGACGAAGTCCAAGGGCGATGGTTTTTGGAAAGGATGTTGTGCT  180

Query  325  GCCATATGCTGCTGTTGTGTCCTGGATGCATGCTTCTGA  363
            |||||||||||||||||||||||||| ||||||||||||
Sbjct  181  GCCATATGCTGCTGTTGTGTCCTGGACGCATGCTTCTGA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19497505979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5