BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22250.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930204 jgi|Araly1|930204|scaffold_302661.1 2111 0.0
Ahg359787 jgi|Araly1|359787|fgenesh1_pg.C_scaffold_1017000001 1332 0.0
> Ahg930204 jgi|Araly1|930204|scaffold_302661.1
Length=1426
Score = 2111 bits (1143), Expect = 0.0
Identities = 1330/1422 (94%), Gaps = 6/1422 (0%)
Strand=Plus/Plus
Query 35 GGAAGAGaaaa-aaaaaGATATGAAAGTAACACAAAAGCCAAAGATAATATTCATCCCTT 93
||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1 GGAAGAGAAAAGAAAAAGATATGAAAGTAACACAAAAGCCTAAGATAATATTCGTCCCTT 60
Query 94 ATCCGGCGCAAGGCCACGTCACTCCGATGCTTCACCTTGCATCGGCTTTCCTCAGCCGTG 153
|||| ||||||||||| || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 61 ATCCTGCGCAAGGCCATGTTACTCCGATGCTCCACCTTGCATCGGCTTTCCTTAGCCGTG 120
Query 154 GATTCTCCCCTGTCGTTATGACTCCCGAGTCTATCCACCGTAGGATCTCGGCTACTAACG 213
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GATTCGCCCCTATCGTTATGACTCCCGAGTCTATCCACCGTCGGATCTCGGCTACTAACG 180
Query 214 AGGATCTTGGGATCACGTTCTTGGCCTTATCTGACGGTCAAGATCGTCCGGACGCACCTC 273
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 181 TGGATCTTGGGATCACGTTCTTAGCCTTATCTGACGGGCAAGATCGTCCGGACGCACCTC 240
Query 274 CCTCGGACTTCTTCTCGATAGAGAACTCAATGGAGAACATCATGCCAC-CACAGCTCGAA 332
||||||||||||||||||||||||| || ||||||||||||||||| | | |||||||||
Sbjct 241 CCTCGGACTTCTTCTCGATAGAGAATTCGATGGAGAACATCATGCC-CTCTCAGCTCGAA 299
Query 333 CGGCTCCTACTAGAAGAAGACTTGGATGTGGCTTGTGTTGTGGTTGATTTGCTGGCTTCG 392
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 300 CGGCTCCTACTAGAAGAAGACTTGGGTGTGGCTTGTGTCGTGGTTGATTTGCTGGCTTCG 359
Query 393 TGGGCTATAGGAGTGGCTGATCGGTGTGGAGTTCCGGTCGCCGGATTCTGGCCGGTGATG 452
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 360 TGGGCTATCGGAGTGGCTGATCGGTGTGGTGTTCCGGTCGCTGGATTCTGGCCGGTGATG 419
Query 453 TTCGCTGCTTACCGTTTGATCCAAGCAATACCGGAGCTAGTCCGAACAGGCTTAGTTTCC 512
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 420 TTCGCTGCTTACCGTTTGATCCAAGCAATACCGGAGCTAGTACGGACAGGCTTAGTTTCC 479
Query 513 CAAAAAGGTTGTCCTCGTCAACTAGAAAAAACAATAGTCCAGCCAGAGCAACCGCTCCTA 572
|||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 480 CAAAAAGGCTGTCCTCGTCAACTAGAAAAACCAATAGTCCTGCCAGAACAACCGCTCCTA 539
Query 573 TCCGCAGAAGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAG 632
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 540 TCCGCAGAAGATCTACCGTGGCTGATCGGAACTCCGAAAGCTCATAAAAATCGATTCAAG 599
Query 633 TTCTGGCAAAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTT 692
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 600 TTCTGGCAAAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATATTGGCAAACTCCTTT 659
Query 693 AAAGATGAATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGATTTA 752
|||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 660 AAAGATGAATATGATGATGTCAACAACCACAAAGCATCCTACAAAATATCTAAAGATTTC 719
Query 753 AACAAAGAAAACAATGGTCAAAACCCTCAAATCCTTCATTTAGGTCCATTGCATAACCAA 812
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 AACAAAGAAAACAATGGTCAAAACCCTCAAATCCTTCACGTAGGTCCATTGCATAACCAA 779
Query 813 GAAGCAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 GAAGCAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATTTCTTGT 839
Query 873 CTAGGTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGG 932
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 840 CTTGGTTGGCTTCAAGAACAAAATCCAAACTCAGTCATTTATATATCATTTGGAAGCTGG 899
Query 933 GTTTCTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGG 992
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 900 GTTTCTCCTATAGGAGAATCAAATATTCAAACATTGGCATTGGCGTTAGAAGCTTCAGGG 959
Query 993 AGACCTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTG 1052
|||||||| |||||||| ||||||| |||||||| ||||||||||||||||| || |||
Sbjct 960 AGACCTTTTCTTTGGGCACTAAACCGGGTGTGGCAGGAGGGACTACCACCAGGGTTCGTG 1019
Query 1053 CATAGAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAA 1112
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1020 CATAGAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCGTGGGCACCGCAACTTGAA 1079
Query 1113 GTTCTTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATG 1172
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 ATTCTTAAAAACAATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACCATG 1139
Query 1173 GAGGCAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTT 1232
||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 GAGGCGGTGGCAAGTTCTCGTAGGCTACTATGTTATCCCGTGGCCGGAGACCAGTTTGTG 1199
Query 1233 AACTGTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAG 1292
|| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1200 AATTGTAAATATATCGTGGACGTGTGGAAAATTGGGGTGAGATTGAGCGGGTTTGGAGAG 1259
Query 1293 AAGGAGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTG 1352
||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1260 AAGGAGGTTGAAGATGGGCTAAGGAAAGTAATGGAGGATCAAAATATGGGTGAAAGATTG 1319
Query 1353 AGGAAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTT 1412
| |||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1320 AAGAAGTTGAGAGATAAAGCAATGGGGAATGAAGCTCGTTTGAATTCGGAAATGAATTTT 1379
Query 1413 ACA-TTTTTAAAAAACGAGCTTAATTAGACGAGCGAAG-AGT 1452
||| ||||||||| || | || ||||||||||||| |||
Sbjct 1380 ACACTTTTTAAAAGT-GAAATAAAATAGACGAGCGAAGTAGT 1420
> Ahg359787 jgi|Araly1|359787|fgenesh1_pg.C_scaffold_1017000001
Length=923
Score = 1332 bits (721), Expect = 0.0
Identities = 859/925 (93%), Gaps = 11/925 (1%)
Strand=Plus/Plus
Query 522 TGTCCTCGTCAACTAGAAAAAACAATAGTCC-AGCCAGAGCAACCGCTCCTATCCGCAGA 580
||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 3 TGTCCTCGTCAGCTAGAAAAACCAATAGTCCTA-CCAGAGCAACCGCTCCTATCCGCAGA 61
Query 581 AGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 640
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 62 AGATCTACCGTGGCTGATAGGAAGTCCGAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 121
Query 641 AAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTTAAAGATGA 700
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 122 ACGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGGCAAACTCCTTTAAAGACGA 181
Query 701 ATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGA-TTTAAACAAAG 759
|||||| |||||| |||| |||| | | |||||||||| ||||| || ||| |||||||
Sbjct 182 ATATGATGATGTCAACAATCACATATCCTCCTACAAAATGTCTAA-GAGTTTCAACAAAG 240
Query 760 AAAACAATGGTCAAAACCCTCAAATCCTTCA--T-TTAGGTCCATTGCATAACCAAGAAG 816
||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct 241 AAAACAATGGTCAAAACCCTCAAATCCTTCACTTATTATGCCCATTGCATAACCAAGAAG 300
Query 817 CAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGTCTAG 876
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 301 CAACAAATAATATAGCTATAACCAAGACTAGTTTTTGGGAAGAAGACATATCTTGTCTTG 360
Query 877 GTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 936
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGCTTCAAGAACAAAATCCAAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 420
Query 937 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGGAGAC 996
||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 421 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGATAGAAGCTTCCGGGAGAC 480
Query 997 CTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTGCATA 1056
|||| ||||||||| ||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 481 CTTTTCTTTGGGCGCTAAACCGAGTGTGGCAAGAGGGACTTCCACCAGGGTTCGTGCATA 540
Query 1057 GAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 1116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGTCACAATCACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 600
Query 1117 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATGGAGG 1176
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 601 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGTTGGAACTCAACAATGGAGG 660
Query 1177 CAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTTAACT 1236
| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 661 CGGTGGCAAGTTCTAGGAGGCTGCTATGTTATCCGGTGGCTGGAGACCAGTTTGTGAACT 720
Query 1237 GTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAGAAGG 1296
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 721 GTAAATACATCGTAGACGTGTGGAAGATTGGGGTGAGATTGAGCGGGTTTGGAGAGAAAG 780
Query 1297 AGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTG-AGG 1355
||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||
Sbjct 781 AGGTTGAAGATGGACTAAGGAGAGTAATGGAGGATAAAGATATGGGTGAGAGCTTGGAG- 839
Query 1356 AAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 1415
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGTTAAGAGATAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 899
Query 1416 -TTTTTAAAAAACGAGCTTAATTAG 1439
|||||||||| ||| |||| |||
Sbjct 900 CTTTTTAAAAAT-GAGATTAAATAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5