BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22250.1 Length=1615 Score E Sequences producing significant alignments: (Bits) Value Ahg930204 jgi|Araly1|930204|scaffold_302661.1 2111 0.0 Ahg359787 jgi|Araly1|359787|fgenesh1_pg.C_scaffold_1017000001 1332 0.0 > Ahg930204 jgi|Araly1|930204|scaffold_302661.1 Length=1426 Score = 2111 bits (1143), Expect = 0.0 Identities = 1330/1422 (94%), Gaps = 6/1422 (0%) Strand=Plus/Plus Query 35 GGAAGAGaaaa-aaaaaGATATGAAAGTAACACAAAAGCCAAAGATAATATTCATCCCTT 93 ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1 GGAAGAGAAAAGAAAAAGATATGAAAGTAACACAAAAGCCTAAGATAATATTCGTCCCTT 60 Query 94 ATCCGGCGCAAGGCCACGTCACTCCGATGCTTCACCTTGCATCGGCTTTCCTCAGCCGTG 153 |||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||| Sbjct 61 ATCCTGCGCAAGGCCATGTTACTCCGATGCTCCACCTTGCATCGGCTTTCCTTAGCCGTG 120 Query 154 GATTCTCCCCTGTCGTTATGACTCCCGAGTCTATCCACCGTAGGATCTCGGCTACTAACG 213 ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 GATTCGCCCCTATCGTTATGACTCCCGAGTCTATCCACCGTCGGATCTCGGCTACTAACG 180 Query 214 AGGATCTTGGGATCACGTTCTTGGCCTTATCTGACGGTCAAGATCGTCCGGACGCACCTC 273 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 181 TGGATCTTGGGATCACGTTCTTAGCCTTATCTGACGGGCAAGATCGTCCGGACGCACCTC 240 Query 274 CCTCGGACTTCTTCTCGATAGAGAACTCAATGGAGAACATCATGCCAC-CACAGCTCGAA 332 ||||||||||||||||||||||||| || ||||||||||||||||| | | ||||||||| Sbjct 241 CCTCGGACTTCTTCTCGATAGAGAATTCGATGGAGAACATCATGCC-CTCTCAGCTCGAA 299 Query 333 CGGCTCCTACTAGAAGAAGACTTGGATGTGGCTTGTGTTGTGGTTGATTTGCTGGCTTCG 392 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 300 CGGCTCCTACTAGAAGAAGACTTGGGTGTGGCTTGTGTCGTGGTTGATTTGCTGGCTTCG 359 Query 393 TGGGCTATAGGAGTGGCTGATCGGTGTGGAGTTCCGGTCGCCGGATTCTGGCCGGTGATG 452 |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 360 TGGGCTATCGGAGTGGCTGATCGGTGTGGTGTTCCGGTCGCTGGATTCTGGCCGGTGATG 419 Query 453 TTCGCTGCTTACCGTTTGATCCAAGCAATACCGGAGCTAGTCCGAACAGGCTTAGTTTCC 512 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 420 TTCGCTGCTTACCGTTTGATCCAAGCAATACCGGAGCTAGTACGGACAGGCTTAGTTTCC 479 Query 513 CAAAAAGGTTGTCCTCGTCAACTAGAAAAAACAATAGTCCAGCCAGAGCAACCGCTCCTA 572 |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||||| Sbjct 480 CAAAAAGGCTGTCCTCGTCAACTAGAAAAACCAATAGTCCTGCCAGAACAACCGCTCCTA 539 Query 573 TCCGCAGAAGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAG 632 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 540 TCCGCAGAAGATCTACCGTGGCTGATCGGAACTCCGAAAGCTCATAAAAATCGATTCAAG 599 Query 633 TTCTGGCAAAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTT 692 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 600 TTCTGGCAAAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATATTGGCAAACTCCTTT 659 Query 693 AAAGATGAATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGATTTA 752 |||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||| Sbjct 660 AAAGATGAATATGATGATGTCAACAACCACAAAGCATCCTACAAAATATCTAAAGATTTC 719 Query 753 AACAAAGAAAACAATGGTCAAAACCCTCAAATCCTTCATTTAGGTCCATTGCATAACCAA 812 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 720 AACAAAGAAAACAATGGTCAAAACCCTCAAATCCTTCACGTAGGTCCATTGCATAACCAA 779 Query 813 GAAGCAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGT 872 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 780 GAAGCAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATTTCTTGT 839 Query 873 CTAGGTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGG 932 || |||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 840 CTTGGTTGGCTTCAAGAACAAAATCCAAACTCAGTCATTTATATATCATTTGGAAGCTGG 899 Query 933 GTTTCTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGG 992 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 900 GTTTCTCCTATAGGAGAATCAAATATTCAAACATTGGCATTGGCGTTAGAAGCTTCAGGG 959 Query 993 AGACCTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTG 1052 |||||||| |||||||| ||||||| |||||||| ||||||||||||||||| || ||| Sbjct 960 AGACCTTTTCTTTGGGCACTAAACCGGGTGTGGCAGGAGGGACTACCACCAGGGTTCGTG 1019 Query 1053 CATAGAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAA 1112 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1020 CATAGAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCGTGGGCACCGCAACTTGAA 1079 Query 1113 GTTCTTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATG 1172 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1080 ATTCTTAAAAACAATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACCATG 1139 Query 1173 GAGGCAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTT 1232 ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 1140 GAGGCGGTGGCAAGTTCTCGTAGGCTACTATGTTATCCCGTGGCCGGAGACCAGTTTGTG 1199 Query 1233 AACTGTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAG 1292 || |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 1200 AATTGTAAATATATCGTGGACGTGTGGAAAATTGGGGTGAGATTGAGCGGGTTTGGAGAG 1259 Query 1293 AAGGAGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTG 1352 ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| Sbjct 1260 AAGGAGGTTGAAGATGGGCTAAGGAAAGTAATGGAGGATCAAAATATGGGTGAAAGATTG 1319 Query 1353 AGGAAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTT 1412 | |||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1320 AAGAAGTTGAGAGATAAAGCAATGGGGAATGAAGCTCGTTTGAATTCGGAAATGAATTTT 1379 Query 1413 ACA-TTTTTAAAAAACGAGCTTAATTAGACGAGCGAAG-AGT 1452 ||| ||||||||| || | || ||||||||||||| ||| Sbjct 1380 ACACTTTTTAAAAGT-GAAATAAAATAGACGAGCGAAGTAGT 1420 > Ahg359787 jgi|Araly1|359787|fgenesh1_pg.C_scaffold_1017000001 Length=923 Score = 1332 bits (721), Expect = 0.0 Identities = 859/925 (93%), Gaps = 11/925 (1%) Strand=Plus/Plus Query 522 TGTCCTCGTCAACTAGAAAAAACAATAGTCC-AGCCAGAGCAACCGCTCCTATCCGCAGA 580 ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||| Sbjct 3 TGTCCTCGTCAGCTAGAAAAACCAATAGTCCTA-CCAGAGCAACCGCTCCTATCCGCAGA 61 Query 581 AGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 640 |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| Sbjct 62 AGATCTACCGTGGCTGATAGGAAGTCCGAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 121 Query 641 AAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTTAAAGATGA 700 | |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || Sbjct 122 ACGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGGCAAACTCCTTTAAAGACGA 181 Query 701 ATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGA-TTTAAACAAAG 759 |||||| |||||| |||| |||| | | |||||||||| ||||| || ||| ||||||| Sbjct 182 ATATGATGATGTCAACAATCACATATCCTCCTACAAAATGTCTAA-GAGTTTCAACAAAG 240 Query 760 AAAACAATGGTCAAAACCCTCAAATCCTTCA--T-TTAGGTCCATTGCATAACCAAGAAG 816 ||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||| Sbjct 241 AAAACAATGGTCAAAACCCTCAAATCCTTCACTTATTATGCCCATTGCATAACCAAGAAG 300 Query 817 CAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGTCTAG 876 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct 301 CAACAAATAATATAGCTATAACCAAGACTAGTTTTTGGGAAGAAGACATATCTTGTCTTG 360 Query 877 GTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 936 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTGGCTTCAAGAACAAAATCCAAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 420 Query 937 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGGAGAC 996 ||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||| Sbjct 421 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGATAGAAGCTTCCGGGAGAC 480 Query 997 CTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTGCATA 1056 |||| ||||||||| ||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 481 CTTTTCTTTGGGCGCTAAACCGAGTGTGGCAAGAGGGACTTCCACCAGGGTTCGTGCATA 540 Query 1057 GAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 1116 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGTCACAATCACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 600 Query 1117 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATGGAGG 1176 |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 601 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGTTGGAACTCAACAATGGAGG 660 Query 1177 CAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTTAACT 1236 | ||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 661 CGGTGGCAAGTTCTAGGAGGCTGCTATGTTATCCGGTGGCTGGAGACCAGTTTGTGAACT 720 Query 1237 GTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAGAAGG 1296 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 721 GTAAATACATCGTAGACGTGTGGAAGATTGGGGTGAGATTGAGCGGGTTTGGAGAGAAAG 780 Query 1297 AGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTG-AGG 1355 ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| || Sbjct 781 AGGTTGAAGATGGACTAAGGAGAGTAATGGAGGATAAAGATATGGGTGAGAGCTTGGAG- 839 Query 1356 AAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 1415 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AAGTTAAGAGATAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 899 Query 1416 -TTTTTAAAAAACGAGCTTAATTAG 1439 |||||||||| ||| |||| ||| Sbjct 900 CTTTTTAAAAAT-GAGATTAAATAG 923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60525399305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5