BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22260.2
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479738 jgi|Araly1|479738|fgenesh2_kg.3__2439__AT3G22260.1 1454 0.0
> Ahg479738 jgi|Araly1|479738|fgenesh2_kg.3__2439__AT3G22260.1
Length=1025
Score = 1454 bits (787), Expect = 0.0
Identities = 964/1043 (92%), Gaps = 37/1043 (4%)
Strand=Plus/Plus
Query 1 GACGAAGAAGAAAACATCTCTGAGACCGACGAAACGAAAGTATCCATTTTTATTTGTCTG 60
||||||||||||||||||||||||| | | |||||||||||||| |||| ||||||||
Sbjct 1 GACGAAGAAGAAAACATCTCTGAGA-C--C--AACGAAAGTATCCA-TTTT-TTTGTCTG 53
Query 61 CAGTAGTAAATCAATCGCATCGG-AAAAAGGAAACCTTCTTTAGCTTCTTCCGTAGCTGA 119
| ||| ||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||
Sbjct 54 C---AGT-AATCAATCGCATCGGAAAAAAAGAAACCTT-TTTAGCTTCTTTCGTCGCTGA 108
Query 120 CGtctctctctatctgtctcttaggtgcctctttcttttcttcaacgatttctctccccc 179
|| |||||||| ||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 109 CG--TCTCTCTA----TCTCTTAGGCGTCTCTTTCTTTTCTTCAACGATTTCTCTCTTCC 162
Query 180 tcttGCTTTAGCTGATCGATTT-CGAAAAATTGAGCTTGCCAAGTCAAGCAACCAGATTT 238
||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 163 TCTTGCTTTGGCTGATCGATTTGGGAAAAATTGAGCTTGCCAAGTCAAGCAACCCGATTT 222
Query 239 TGTTGGTTGTATTTAGTATAGGATCCAAATACAATGGATGAAAACCATAGGAATCCATTT 298
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 223 TGTTGGTTGTATTTAGTATAGGGTCCAGATACAATGGATGAAAACAATAGGAATCCATTT 282
Query 299 GCAAATGCAAGTACAAGTGCTAGAGCAAGCGGCAGTACAAGTGCGAGCTCAAACTCGAGT 358
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCAAGTGCAAGTACAAGTGCAAGAGCAAGCGGCAGTACAAGTGCGAGCTCAAACTCGAGT 342
Query 359 TTTAGTAGCAGTGTGGCGGATACAGATGATGATCAGACCATTGCACGTATATTAGCTGAA 418
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 343 TTTAGTAGCAGTGTGGCGGATACAGATGATGATCAAACCATTGCACGTATATTAGCAGAA 402
Query 419 GATGAGAGCTTGAGAAGAGAAGGCAAGCTTGGGAAGAGATTATCTCATTTGGATTCTATC 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GATGAGAGCTTAAGAAGAGAAGGCAAGCTTGGGAAGAGATTATCTCATTTGGATTCTATC 462
Query 479 CCACACACTCCTCGGGTTAACAGGGAGATACCTGATATAAATGATGCAACATTAGACCAT 538
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 463 CCACATACTCCTCGGGTTAACAGGGAAATACCCGATATAAATGATGCAACATTAGACCAT 522
Query 539 GAGCTGCTCTCTGGGAGGTTGGCCACATATGGTTTAGCGGAATTGCAAATGGAGGGAGAT 598
||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 523 GAGCTGCTCTCTGGGAGGTTGGCTACATATGGGTTAGCCGAATTACAAATGGAGGGAGAT 582
Query 599 GGAAATTGCCAGTTTCGAGCTTTAGCAGACCAGCTTTTCCGCAATGCAGATTACCATAAA 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 GGAAATTGCCAGTTTCGAGCTTTAGCAGACCAGCTTTTCCGGAATGCAGATTACCATAAA 642
Query 659 CATGTAAGGAAGCATGTTGTAAAGCAGTTAAAACAACAACGGAAGTTATACGAAGAATAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CATGTAAGGAAGCATGTTGTAAAGCAGTTAAAACAACAACGGAAGTTATACGAAGAATAT 702
Query 719 GTGCCAATGAAATACAGACACTACACCAGGAAGATGAAAAAACATGGTGAATGGGGAGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GTGCCAATGAAATACAGACACTACACCAGGAAGATGAAAAAACATGGTGAATGGGGAGAT 762
Query 779 CATGTTACTCTTCAAGCTGCAGCGGATAGATTCGAAGCCAAGATCTGCTTAGTCACATCC 838
|||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||
Sbjct 763 CATGTTACTCTTCAAGCTGCTGCAGATCGATTCGAAGCAAAGATCTGCTTAGTCACATCC 822
Query 839 TTTCGGGATCAATCCTACATCGAGATTCTTCCTCATAACAAGAACCCTCTTAGAGAGGCT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTTCGGGATCAATCCTACATCGAGATTCTTCCTCATAACAAGAACCCTCTTAGAGAGGCT 882
Query 899 TGGCTCAGCTTCTGGAGCGAAGTGCATTACAATTCTTTATACGCTAATGGAGTTCTTGCT 958
||||| ||||||||||| ||||||||||||||||| |||||||||| |||| | | |
Sbjct 883 TGGCTTAGCTTCTGGAGTGAAGTGCATTACAATTCGCTATACGCTAACGGAGAT---G-T 938
Query 959 CTTCCAGATGTTCCAACAAGAAAACCGAGAAGGAAGCATTGGCTCTTCTAGTATTGGATT 1018
| ||| | | || ||||||| || ||||||||||||||||||||| |||| |||
Sbjct 939 C--CCA-A----C-AA---GAAAACCCAGGAGGAAGCATTGGCTCTTCTAGGATTGCATT 987
Query 1019 TAAAGTTCATCTCCATTTGTATA 1041
|| ||||||||||| | |||||
Sbjct 988 TAG-GTTCATCTCCAAT-GTATA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5