BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22270.1
Length=3295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479740 jgi|Araly1|479740|fgenesh2_kg.3__2441__AT3G22270.1 5210 0.0
Ahg946844 jgi|Araly1|946844|scaffold_703073.1 1875 0.0
> Ahg479740 jgi|Araly1|479740|fgenesh2_kg.3__2441__AT3G22270.1
Length=3277
Score = 5210 bits (2821), Expect = 0.0
Identities = 3155/3310 (95%), Gaps = 48/3310 (1%)
Strand=Plus/Plus
Query 1 ATGTTACACACGGCCAAGGAAACAGAACAAGAACAAATAAAGGCCATTGctttcttcttc 60
|||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||
Sbjct 1 ATGTTACACACGGCGAAGGAAACAGAACAAGAAAAAATAAAGGCCATTGC--T-TTCTT- 56
Query 61 ccttccccttctcttcattgcccttct--ctctctcttttttATCGCGGAGAGAGTTTTA 118
||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||
Sbjct 57 -CTT--CCTTCTCTTCATTACCCTTCTCGCTCTCTCTTTTTTGTCGCGGAGAGAG-TTT- 111
Query 119 TAGATTTCTCCTTCTTCAAC-TTTACTTGCGTTTCTTTG-TTTTATCAATTCGAAAACCC 176
|||| || ||||| |||||| ||||||||||||| |||| ||||||||||| ||||||||
Sbjct 112 TAGA-TT-TCCTTGTTCAACTTTTACTTGCGTTT-TTTGTTTTTATCAATTGGAAAACCC 168
Query 177 TAGCAGCAATCTCTGCTGATTTCACTTACCCACCTCGAATTTTGTTGT-TCTATCTCCTT 235
|||||||||||||||||||||||||||||||||||| |||||| | | ||| |||||||
Sbjct 169 TAGCAGCAATCTCTGCTGATTTCACTTACCCACCTCAAATTTT-ATCTCTCTGTCTCCTT 227
Query 236 CACAAAGCACCACCTATCTGAAACCCTAGGGGAAGAGGATTCTCTCTTATGTCCTCTTCT 295
||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 228 CACAAAGTACCACCTATCTGAAACCCTAGGGAAAGAGGA-T-TCTCTTATGTCCTCTTCT 285
Query 296 GTTATCTTCTCTTACCTCTAAAGTTTCGTTTATTTCGATCATGGAGAGATCTGATTCAAG 355
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 286 GTCATCTTCTCTTACCTCTAAAGTTTCGTTT-TTTCGATCATGGAGAGATCTGATTCAAG 344
Query 356 GGATTTGTATAACTTTGTTCGCGCTTCTTCCTTAGATAAAAACAGTACACTCTTTGATGC 415
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 345 GGATTTGTATAACTTTGTGCGTGCTTCTTCCTTAGATAAAAACAGTACACTCTTCGATGC 404
Query 416 ATCACAATATGAGTTTTTTGGACAAAATCTGGATGATATGGAACTTGGGGGTCTTGATGA 475
||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| ||
Sbjct 405 ATCACAATATGAGTTTTTTGGTCAGAATCTGGATGATATGGAAATTGGAGGTCTTGACGA 464
Query 476 TGATGGAGTAATCGCTCCTGTTCTTGGACATGCTGATGATGATGAGTATCACTTGTTTGA 535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGATGGAGTGATCGCTCCTGTTCTTGGACATGCTGATGATGATGAGTATCACTTGTTTGA 524
Query 536 TAAAGGAGAGGGTGCAGGTTTAGGATCACTATCTGACATGGATGATCTTGCGACAACTTT 595
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TAAAGGAGAGGGAGCAGGTTTAGGATCACTATCTGACATGGATGATCTTGCGACAACTTT 584
Query 596 CGCAAAGTTAAACAGAGTTGTTACCGGACCCAAACACCCTGGAGTTATTGGTGATAGAGG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 585 CGCAAAGTTAAACAGAGTTGTTACCGGACCCAAACACCCTGGAGTTATTGGTGACAGAGG 644
Query 656 ATCAGGATCCTTTTCAAGAGAGAGTTCTTCTGCTACCGATTGGACACAAGATGCAGAGCT 715
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 645 ATCAGGATCCTTTTCAAGAGAGAGTTCTTCTGCTACCGATTGGACACATGATGCAGAGCT 704
Query 716 CACAAGCTGGTTGGACGAACAAGATCAAGAAGCTAAGAGATGGTCCTCACAGCCACAATC 775
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 705 CACAAGCTGGTTGGACGAACAAGATCAAGAAGCTAAGAGGTGGTCCTCACAGCCACAATC 764
Query 776 ATTTGCTCATTCAAAACCTTTGTACAGGACATCCTCTTATCCTCAGCAGCAACCGCAGCT 835
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 765 ATTTGTTCATTCAAAACCTTTGTACAGGACATCCTCCTATCCTCAGCAGCAACCGCAGCT 824
Query 836 GCAGCACTACAATAGTGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCAGCACTACAATAGTGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCC 884
Query 896 GCCTGGTAACAGATCTCCGCAGGCTTCACCCGGAAATCTCCATCGCGCTCCTTCTCTTCC 955
| |||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 885 GTCTGGTAGCAGATCTCCACAGGCGTCACCCGGAAATCTCCATCGTGCTCCTTCTCTTCC 944
Query 956 TGGTGGTTCTCAGTTGACCTATTCTGCACCTTCCCCGCTGTCAAATTCTGGTTTTCATCT 1015
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 945 TGGTGGTTCTCAGTTGACCTATTCTGCACCTTCCCCACTGTCAAATTCTGGTTTTCATCT 1004
Query 1016 TTCAGGATTGTCGCAAGGGCCCCACTATGGTGGTAATTTGACTAGATATGCCTCGTGCGG 1075
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1005 TTCAGGATTGTCGCAAGGGCCCCACTATGGTAGTAATTTGGCTAGATATGCCTCGTGCGG 1064
Query 1076 TCCTACGCTTGGTAACATGGTGCAACCTCATTGGGTCACTGATCCTGGTCATCTACACGG 1135
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1065 TCCTACGCTTGGTAACATGGTGCAACCTCATTGGGTTACTGATCCTGGTCTTCTACACGG 1124
Query 1136 AGATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCATCAACAATTGCCTCCTCG 1195
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1125 AGATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCAGCAACAATTGCCTCCTCG 1184
Query 1196 AAATGCTATTATGTCGCAACATTTGCTTGCCCTCCAGCAGAGACAATCATATGCTCAACT 1255
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1185 AAATGCCATTATGTCGCAACATTTGCTCGCCCTCCAGCAGAGACAATCGTATGCTCAGCT 1244
Query 1256 TGCAGCGCTACAGTCTCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCCTTT 1315
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TGCGGCGCTACAGTCCCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCCTTT 1304
Query 1316 TGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAATAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1305 TGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAACAG 1364
Query 1376 AGGACTCTCTCAACAGACATCAGACGCAGCTAGTCAGAAAAGTGAAACTGGACTGCAGTT 1435
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1365 AGGCCTCTCTCAACAGGCATCAGACGCAGCTAGTCAGAAAAGTGAAAGTGGACTGCAGTT 1424
Query 1436 TAGATCAAAGCACATGACTTCAGAAGAAATAGAGAGTATACTCAAGATGCAGCATTCCAA 1495
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1425 TAGATCAAAGCACATGACTTCAGAAGAAATAGAGGGTATACTCAAGATGCAGCATTCCAA 1484
Query 1496 TTCACACAGCAATGATCCCTATGTCAATGATTATTACCACCAAGCGAAGCTTGCCAAGAA 1555
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1485 TTCACACAGCAATGATCCCTATGTCAATGATTATTACCACCAAGCTAAGCTTGCCAAGAA 1544
Query 1556 GTCTGCCGGATCTAAAGCAATCTCTCACTTCTATCCTGCTCAGTTGAAGGACCACCAGCC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GTCTGCCGGATCTAAAGCAATCTCTCACTTCTATCCTGCTCAGTTGAAGGACCACCAGCC 1604
Query 1616 TCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCTTGGTAAAAT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1605 TCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCTTGGTAAGAT 1664
Query 1676 TACACTTCCATCTGTCCGCAGGCCACATGCCTTGCTTGAGGTTGACTCTTCTCCTGGTTT 1735
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TACACTTCCTTCTGTCCGCAGGCCACATGCCTTGCTTGAGGTTGACTCTTCTCCTGGTTT 1724
Query 1736 TAACGATGGAAGCGGGGATCATAAGGGCTCAGGAAAACATTTGGAACAGGAACCTCTCGT 1795
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1725 AAACGATGGAAGCGGGGATCATAAAGGCTCAGGAAAACATTTGGAACAGGAACCTCTCGT 1784
Query 1796 TGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACATAGTTGACATTGA 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 TGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACATAGTTGACATTGA 1844
Query 1856 CAGGACTCTCCAAAACACAAGACCCCAGGACGGAGGTGCCCAACTCAAGAGAAAGCGGCA 1915
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CAGGACTCTCCAAAATACAAGACCCCAGGACGGAGGTGCCCAACTCAAGAGAAAGCGGCA 1904
Query 1916 GATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCGTTCAGCAAAACCGG 1975
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 AATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCGTTCAGCAAAACCGG 1964
Query 1976 TCAGAAATCTGGGATGACTGCTAAGGATGATATTGTCTTTCTACGTATAGCGACTCTCCC 2035
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TCAGAAATCCGGGATGACTGCTAAGGATGATATTGTCTTTCTACGTATAGCGACTCTCCC 2024
Query 2036 CAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCCAGGTACTGAGAATGC 2095
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2025 CAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCCAGGTACTGAGATTGC 2084
Query 2096 TCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGTTCGGCGGCCTACCTTC 2155
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2085 TCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGTTTGGCGGCCTGCCTTC 2144
Query 2156 AGATACTCTAGCAGCAGAGACAATATCTAATCTTGCCAAAGCAGTCACGGTTTGCGTTCA 2215
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2145 AGATACTCTAGCAGCAGAGACGATATCTAATCTTGCCAAAGCAGTCACGGTTTGCGTTCA 2204
Query 2216 GGCCATGGACCTTCGAGCACTGAGTGCTTGCCTTGCAGCTGTAGTATGTTCTTCAGAGCA 2275
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2205 AGCCATGGACCTTCGAGCACTGAGTGCTTGCCTCGCAGCTGTAGTTTGTTCTTCAGAGCA 2264
Query 2276 GCCACCTCTCCGTCCTATCGGAAGTTCTGCTGGAGATGGTGCTTCAGTTGTCTTGATATC 2335
||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2265 GCCACCTCTGCGTCCTATTGGAAGTTCTGCTGGGGATGGTGCTTCAGTTGTGTTGATATC 2324
Query 2336 TCTTCTTGAGAGAGCTGCGGAAGTAGTGGTGGTTCCTCGAGTCATGCATGGGAATTCTAA 2395
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2325 TCTTCTTGAGAGAGCTGCTGAAGTAGTGGTGGTTCCACGAGTCATGCATGGGAATTCTAA 2384
Query 2396 TGATGGTCTCTGGAGAGCGTCATTTGATGAATTCTTCAACCTTCTTACCAAATACTGCAG 2455
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 TGATGGTCTCTGGAGAGCCTCATTTGATGAATTCTTCAACCTTCTTACCAAATACTGCAG 2444
Query 2456 AAGCAAGTATGACACAATCCGTGGACAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCT 2515
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2445 AAGCAAGTATGAGACAATCCGCGGTCAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCT 2504
Query 2516 GGCGATAAAGAGGGAAATGCCCGCTGAGCTTTTACGTGCGAGTCTGCGTCACACCAATGA 2575
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2505 GGCGATAAAGAGGGAAATGCCCGCTGAGCTTTTACGGGTGAGTCTGCGTCACACCAATGA 2564
Query 2576 CGACCAGAGGAACTATTTATTAAACTTTGGTCGTAAACCATCAGCAATTAGTGAGTCGGC 2635
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2565 CGACCAGAGGAACTATTTATTAAACTTTGGTCGTAAACCGTCGGCAATTAGTGAGTCGGC 2624
Query 2636 ATCTCATGCAAGGGGTGGACAGATCAACTCTGAATCTGTGAGGGGTTAATAAA-AAAGAA 2694
||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||
Sbjct 2625 GTCTCATGCAAGGGGTGGACAGATCAACTCCGAATCTGTGAGAGGTTAATAAAGAAA-AA 2683
Query 2695 AGAGAAACCATGTGCTTGGAAGATTCCAATTCTTGGTTTTCATGG-CTGTGGTGTGGACT 2753
|||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 2684 AGAGAAACCATGGGCTTGGAAGATTCCAGTTCTTGGTTTTC-TGGGCTGTGGTGTGGACT 2742
Query 2754 CAGGAGACAAACTTGTAAGTAACCTGGTGGTGTAGGAATCTTTTCACAAGGGTTTCAGGT 2813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2743 CAGGAGACAAACTTGTAAGTAACCTGGTGGTGTAGGAATCTTTTCACAAGGGTTTCAGGT 2802
Query 2814 GAAAAGTGCTTTTAGATTCTGCTCTTCGTCTTCGT-TTTT-T-AACTTTGAACTCTTTTA 2870
|||||||||||||||||||||||| || ||||| | |||| | |||||||||||||||||
Sbjct 2803 GAAAAGTGCTTTTAGATTCTGCTCGTCTTCTTCTTCTTTTCTTAACTTTGAACTCTTTTA 2862
Query 2871 TATTTCGTATTATC-TTTTATGGTGGACAAATGCATATTCTGCTTGGTTTGTGTATTGGA 2929
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2863 TATTTCGTATT-TCCTTTTATGGTGGACAAATGCAAATTCTGCTTGGTTTGTGTATTTGA 2921
Query 2930 TGATGGGAAAGAATGTGAAACATGGAGTAGTAGGGTTATCTGAAGAAGTAATGTCTTCCG 2989
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2922 TGATGGGAAAGAATGTGAAACATGGAGTAGTAGG-TTATCGGAAGAAGCAATGTCTTCCG 2980
Query 2990 ATGGGAGCCATATTTTGGTGCTCTAAATCGTTAGGGAAACAAAAA-TAGGAGGGAACTTT 3048
| | |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 2981 A-GAGAGCCATATTTTGGTGCTCTAA-TCGTTAGGGAAACAAAAAATAGGAGGGAATTTT 3038
Query 3049 AGTAGTTTGGGAAGGATACTAGTGTTTTGTGTACAGAATGATGATAAAACCCTTTATCCG 3108
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3039 AGTGGTTTGGGAAGGATACTAGTGTTTTGTGTACAGAATGCTGATAAAACCCTTTATCCG 3098
Query 3109 GAGAATAGTGAGAAGACTATATAGGTGTTAATCCTCTTCGATTAACAGGTTTAG-G-TCC 3166
||||||||||||||| | ||| |||| ||||| |||||||||||||||||||| | ||
Sbjct 3099 GAGAATAGTGAGAAGGCGATA--GGTGCTAATCATCTTCGATTAACAGGTTTAGAGGTCT 3156
Query 3167 GGAAAGCAGCTGGGAATCTGGGATAGGGAGTTCAAAAGTTTGTTATCTGATATGTTTATT 3226
||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3157 GGAAA--AGCAG-----CTGGGATAGGGAGTTAAAAAGTTTGTTATCTGATATGTTTATT 3209
Query 3227 TCCTCTTTGAACTGTTTCGTGTAATAGT-AGTAGGAACTCACAAAAACCCTCTTTTGAAT 3285
|||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||| |||
Sbjct 3210 TCCTCTGAGAACTCTTTCGTGTAATAGTTA-TAGGAACTCACAAAA-CCCTCTTTTAAAT 3267
Query 3286 ACTCTTGGAT 3295
|||||||||
Sbjct 3268 TCTCTTGGAT 3277
> Ahg946844 jgi|Araly1|946844|scaffold_703073.1
Length=2412
Score = 1875 bits (1015), Expect = 0.0
Identities = 1982/2431 (82%), Gaps = 138/2431 (6%)
Strand=Plus/Plus
Query 332 GATCATGGAGAGATCTGATTCAAGGGATTTGTATAACTTTGTTCGCG-CTTCTTCCTTAG 390
||||||||||||||||||||| || ||||| |||| ||||| ||| | |||||| | ||
Sbjct 22 GATCATGGAGAGATCTGATTCTAGAGATTTCTATACCTTTGCTCG-GACTTCTT-C--AG 77
Query 391 ATAAAAACAGTACACTCTTTGATGCATCACAATATGAGTTTTTTGGACAAAATCTGGATG 450
|||| || ||| |||||||||| ||||| ||||||||||| ||||| |||| ||| || |
Sbjct 78 ATAAGAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTTGAAG 137
Query 451 ATA-TGGAACTTGGG-GGTCTTGATGATGATGGAGTAATCGCTCCTGTTCTTGGACATGC 508
| | ||||| ||||| ||||||||||||||| | | | |||||| ||||||||
Sbjct 138 A-AGTGGAA-TTGGGTGGTCTTGATGATGAT---G---T---TACTGTTCGTGGACATG- 185
Query 509 T-GATGATGATGAGTATCACTTGTTTGATAAAGGAGAGGGTGCAGGTTTAGGATCACTAT 567
| |||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 186 TCGATGATGAAGAGTATCATTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCACTAT 245
Query 568 CTGACATGGATGATCTTGCGACAACTTTCGCAAAGTTAAACAGAGTTGTTACCGGACCCA 627
|||| |||||||||||||| |||||||| |||||| | |||||| |||||| || ||||
Sbjct 246 CTGAGATGGATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACTGGGCCCA 305
Query 628 AACACCCTGGAGTTATTGGTGATAGAGGATCAGGATCCTTTTCAAGAGAGAGTTCTTCTG 687
|||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 306 AACACCTTGGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTG 365
Query 688 CTACCGATTGGACACAAGATGCA-GAGCTCACAAGCTGGTTGG-AC-G-A-A--C---AA 737
|||| ||||||||||||||| | ||| ||||||||||||||| || | | | | ||
Sbjct 366 CTACTGATTGGACACAAGAT-AATGAGTTCACAAGCTGGTTGGAACAGCACACGCTTGAA 424
Query 738 GATCAAG--AAGCTAAG--AGATGGTCCTCACAGCCACAATCATTTGCTCATTCAAAACC 793
|| |||| || ||| || ||||| ||||||||||| || | |||| |||| | |
Sbjct 425 GAACAAGTTCAG-GAAGCTAGTTGGTCTTCACAGCCACAGTCGTCTGCTAATTC---ATC 480
Query 794 TTTGTACAGGACATCCTCTTATCCTCAGCAGCAACCGCAGCTGCAGCACTACAATAGTGA 853
||| ||||||||||| || ||||||||||||||| | ||||| || || |||| ||||||
Sbjct 481 TTTATACAGGACATCTTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGTGA 540
Query 854 ACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCCGCCTGGTAACAGATCTCC 913
|||||| ||| |||||||||| | |||||| || ||||| ||||||| || |||||||
Sbjct 541 ACCGATTATTGTACCAGAATCGACTTTTACGTCTTTTCCTTCGCCTGGAAAAAGATCTCA 600
Query 914 GCAGGCTTCACCCG-GAAATCTCCATCGCGCTCCTTCTCTTCCTGGTGGTTCTCAGTTGA 972
||| ||||| ||| | || | ||||| ||||||||||||||||||||| ||||| |
Sbjct 601 ACAGTCTTCA-CCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCAA 659
Query 973 CCTATTCTGCACC---T---TCCCCGCTGTCAAATTCTGGTTTTCATCTTTCAGGATTGT 1026
|| ||| ||||| | || ||| |||| |||||| ||| ||||| ||||||||||
Sbjct 660 ACTTTTCAGCACCAAATGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCAGGATTGT 719
Query 1027 CGCAAGG-GC-CC-CACTATGGTGGTAATTTGACTAGATATGCCTCGTGCGGTCCTACGC 1083
| || || | || || |||||| ||||||| ||||||||||||| || |||||||| |
Sbjct 720 CACATGGACCACCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTC 779
Query 1084 TTGGTAACATGGT---GCAA---CCTCATTGGGTCACTGATCCTGGTCATCTACACGGAG 1137
||||||||||||| |||| ||||||||||| || || || |||| ||| ||||| |
Sbjct 780 TTGGTAACATGGTGCAGCAACCTCCTCATTGGGTTACCGACCCCGGTCTTCTGCACGGTG 839
Query 1138 ATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCA--T-CAACAATTGCCTCCTC 1194
||||||| || || ||||| | ||| ||||||| ||||| | |||||||| |||||||
Sbjct 840 ATCATTCCGGGTTGTTACACAGTCTAATGCAACAGCAGCATCTGCAACAATTACCTCCTC 899
Query 1195 GAAATGCTATTA-TGTCGCAACATTTGCTTGCCCTCCAGCAGAGACAATCATAT-GCTCA 1252
| |||| | ||| | || ||||| ||| || |||| |||||||||||||| | | |||||
Sbjct 900 GGAATGGTTTTACT-TCACAACAGTTGATTTCCCTTCAGCAGAGACAATC-TTTAGCTCA 957
Query 1253 ACTTGCAGCGCTACAGTCTCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCC 1312
||||| || | || |||| ||||||||||| |||||||| ||||||| ||||| ||
Sbjct 958 TCTTGCTGCATTGCAAACTCAGCTGTATAGTTCTTATCCTTCTCCATCACAAAAAGTTCC 1017
Query 1313 TTTTGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAA 1372
|||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTTTGGGGCTGGTGAAGTAAGAGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAA 1077
Query 1373 TAGAGG-ACTCTCTCAACAGACATCAGACGCAGCTAGTCAGAAAAGTGAAA-CTGGACTG 1430
||||| | ||||||||||||| ||||| ||||| |||||||| |||| | ||||||
Sbjct 1078 CAGAGGTA-TCTCTCAACAGACCTCAGATTTGGCTAGCCAGAAAAGCGAAAGC-GGACTG 1135
Query 1431 CAGTTTAGATCAAAGCACATGACTTCAGAAGAAATAGAGAGTATACTCAAGATGCAGCAT 1490
|| |||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1136 CAATTTAAATCAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCAT 1195
Query 1491 TCCAATTCACACAGCAATGATCCCT-ATGTCAATGATTATTACCACCAAGCGAAGCTTGC 1549
|||| ||||||||| | ||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 1196 TCCAGTTCACACAGTAGTGA-CCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGC 1254
Query 1550 CAAGAAGTC-TGCCGGATCTAA-AGC-AATCTCTCACTTCTATCCTGCTCAGTTGAAGGA 1606
|| ||||| | ||||||| || || || | |||| || |||||| |||| ||||||||
Sbjct 1255 GAAAAAGTCAT-CCGGATC-AAGAGTGAAGC-CTCAGTTGTATCCTTCTCATTTGAAGGA 1311
Query 1607 CCACCAGCCTCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCT 1666
|||||| |||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 1312 CCACCAATCTCGGTCCCGTAATAGTTCTGATCAACAACCACAAGTTCATGTGGATGCTCT 1371
Query 1667 TGGTAAA-ATTACACTTCCATCTGTCCGCAGGCCAC-ATGC-CTTGCTTGAGGTTGACTC 1723
||| ||| ||||| ||||| ||| | |||| |||| | || || || |||||||||||
Sbjct 1372 TGG-AAAGATTACGCTTCCTTCTATTTGCAGACCACGA-GCGCTA-CTCGAGGTTGACTC 1428
Query 1724 TTCTCCTGGTTTTAACGATGGAAGCGGGGATCATAAGGGCTCAGGAAAACAT-TTGGAAC 1782
| ||||| | | | |||||||| | || | || ||| || ||| ||| ||
Sbjct 1429 TCCTCCTAGCTCTGGTGATGGAAG-G----TC-T--GG--TCAT-AAG-CATCTTG-AAG 1475
Query 1783 AGGAACCTCTCGTTGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACA 1842
| || ||||| || |||||||| || ||||||||||||||| ||||||||||||| || |
Sbjct 1476 ATGAGCCTCTTGTCGCAGCTAGAGTCACAATTGAAGATGCTTTTGGAGTTCTTATCGATA 1535
Query 1843 TAGTTGACATTGACAGGACTCTCCAAAACA-CAAGACCCCAGGACGGAGGTGCCCAACTC 1901
|||||||||||||||||||||||||| || || | || || ||||| ||||| || |||
Sbjct 1536 TAGTTGACATTGACAGGACTCTCCAATTCAACAGG-CCACAAGACGGTGGTGCACAGCTC 1594
Query 1902 AAGAGAAAGCGGCAGATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCG 1961
| |||||| |||||||| || |||||||||||||| ||| |||||||||||| ||||||
Sbjct 1595 AGGAGAAAACGGCAGATACTTCTAGAAGGATTAGCAACATCACTTCAACTTGTTGATCCT 1654
Query 1962 TTCAGCAAAACCGGTCAGAAATCTGGGAT-GACTGCTAAGGATGATATTGTCTTTCTACG 2020
|| ||||||||||| |||||| | | || ||| || ||||||||||| || ||||||||
Sbjct 1655 TTTAGCAAAACCGGCCAGAAAACCGC-ATTGACCGCCAAGGATGATATCGTGTTTCTACG 1713
Query 2021 TATAGCGACTCTCCCCAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCC 2080
||||| ||||| || |||||| | |||||||| |||||||||||||| ||||| |||||
Sbjct 1714 CATAGCTACTCTTCCTAAGGGTAGAAAATTGCTGACAAAGTATCTACAGCTTCTTGTTCC 1773
Query 2081 AGGTACTGAGAAT-GCTCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGT 2139
|||||||||| | ||||| ||||||||||||||| ||||||||||| | || ||||| |
Sbjct 1774 GGGTACTGAGA-TCGCTCGGGTTGTCTGTATGGCTGTATTCCGCCACCTCAGGTTTCTAT 1832
Query 2140 TCGGCGGCCTACCTTCAGATA-C-TCTAGCAGCAGAGACAATATCTAATCTTGCCAAAGC 2197
|||| |||||||| ||||||| | | | ||||||||||||||| |||||||||| |||||
Sbjct 1833 TCGGTGGCCTACCGTCAGATAGCAT-T-GCAGCAGAGACAATAGCTAATCTTGCTAAAGC 1890
Query 2198 AGTCACGGTTTGCGTTCAGGCCATGGACCTTCGAGCACTGAGTGCTTGCCTTGCAGCTGT 2257
||| |||||||| ||||| || |||||||| |||||| |||||||||| |||||||||||
Sbjct 1891 AGTTACGGTTTGTGTTCACGCAATGGACCTCCGAGCATTGAGTGCTTGTCTTGCAGCTGT 1950
Query 2258 AGTATGTTCTTCAGAGCAGCCACCTCTCCGTCCTATCGGAAGTTCTGCTGGAGATGGTGC 2317
|| ||||||||||| ||||||||||||||||| || |||||| || | || ||||| ||
Sbjct 1951 TGTTTGTTCTTCAGAACAGCCACCTCTCCGTCCAATAGGAAGTCCTTCCGGGGATGGAGC 2010
Query 2318 TTCAGTTGTCTTGATATCTCTTCTTGAGAGAGCTGC-G--G-A--AGTAGTGGTGGT--T 2369
||||||||||||| |||||||||||||||||||||| | | | |||||||||||| |
Sbjct 2011 TTCAGTTGTCTTGGTATCTCTTCTTGAGAGAGCTGCTGAAGTAGTAGTAGTGGTGGTGGT 2070
Query 2370 -CCTC-GAGTCATGCATGGGAATTCTAATGATGGTCTCTGGAGAGCGTCATTTGATGAAT 2427
|| | | || | || | || || |||||||| ||||||||||| || ||||||||||
Sbjct 2071 TCCACCGCGTG-T-CA-GC-AACTCGAATGATGGACTCTGGAGAGCATCGTTTGATGAAT 2126
Query 2428 TCTTCAAC-CTTCTTACCAAATACTGCAGAAGCAAGTATGACACAATCCGTGGACAGAAC 2486
||||| | |||||||| ||||| ||||| ||||||||||| ||||||| ||| ||||||
Sbjct 2127 TCTTCT-CTCTTCTTACTAAATATTGCAGGAGCAAGTATGAGACAATCCATGGTCAGAAC 2185
Query 2487 CAAGGG-AGTGCAGCGGATGTTTTGGAGCTGGCGATAAAGAGGGAAATGCCCGCTGAGCT 2545
|| || | |||||| ||||| |||||||| || |||||||| |||||||| || |||||
Sbjct 2186 CA-GGATAATGCAGCTGATGTGTTGGAGCTAGCTATAAAGAGAGAAATGCCTGCCGAGCT 2244
Query 2546 TTTACGTGCGAGTCTGCGTCACACCAATGACGACCAGAGGAACTAT-TTA-TTAAACTTT 2603
||||||||||||||| ||||| |||||||| ||||| |||| | | ||| |||| | ||
Sbjct 2245 TTTACGTGCGAGTCTTCGTCATACCAATGAAAACCAGCGGAATT-TCTTACTTAA-CGTT 2302
Query 2604 GGTCGTAAACCATCAGCAA-TTAGTGAGTCGGCATCT-CA--------TGCAAGGGGTGG 2653
||||||| |||| || | |||| || || || || || |||||| |||||
Sbjct 2303 GGTCGTAGTGCATC-GCCAGTTAGCGAATCAACAACTACAACGACGCGTGCAAGTGGTGG 2361
Query 2654 ACAGATCAACTCTGAATCTGTGAGGGGTTAA 2684
||| |||| ||||||| |||||||||||||
Sbjct 2362 TCAGGTCAATTCTGAATTTGTGAGGGGTTAA 2392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124372148564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5