BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22275.1

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479741 jgi|Araly1|479741|fgenesh2_kg.3__2442__AT3G22275.1         645    0.0  


> Ahg479741 jgi|Araly1|479741|fgenesh2_kg.3__2442__AT3G22275.1
Length=472

 Score =  645 bits (349),  Expect = 0.0
 Identities = 436/478 (91%), Gaps = 6/478 (1%)
 Strand=Plus/Plus

Query  1    GATTACTTTGATACGAAAATCGACCAAAGTAAGAATATTTACCTAGAGAGGATCATGAAG  60
            ||||||||||| ||||||||| |||||||||||||| || ||| |||||| |||||||||
Sbjct  1    GATTACTTTGACACGAAAATCTACCAAAGTAAGAATCTTGACCCAGAGAGAATCATGAAG  60

Query  61   GGTTGCAGCTTAGATCTTCACCTATCTCCAATGGCCTCTACGCTTCAATCTTGTCATCAA  120
            ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||  |||
Sbjct  61   GGTTGCAGCTTAGATCTCCACCTATCTCCATTGGCATCTACGCTTCAATCTTGTCGCCAA  120

Query  121  GATTCTACAGTTAATGATCGTTCTTCAACCATAAGATCTAAGGAAATCAATGCATTTTAT  180
            |||||||| |||||||||| ||||||| |||||||| |||||||||| ||||||||| ||
Sbjct  121  GATTCTACGGTTAATGATCATTCTTCAGCCATAAGAGCTAAGGAAATTAATGCATTTCAT  180

Query  181  AGTGGGAGATTAAGTGAGTACGATCTTGTAGAGATCCAGATGAGAGCAATAATAGAGATG  240
            |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct  181  AGTGGGAGATTAAGTGAGTACGATCTCGTAGAGATCCAGATAAGGGCAATAATAGAGATG  240

Query  241  GCGAGCAAGGATCGTGAAGTAACAGCGTTAGAGTTAGTGCCGGTGAGACTGGAATCACCG  300
            ||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||| |||
Sbjct  241  GCGAGCAAGGAGCGTGAAGTAACGGCGTTAGAGTTAGCGCCGGCGAGACTGGAATCGCCG  300

Query  301  TTAGGATGTTCGGTGAAGAGATCTGTGAAAAGGTTCTTGGAGAAGAGGAAGAAGAGAAGC  360
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  TTAGGATGTTCGGTCAAGAGATCGGTGAAAAGGTTCTTGGAGAAGAGGAAGAAGAGAAGC  360

Query  361  AAATCTTTTACACTTACACCTAATTACACCTCAAGTACTTCCTCATCATCCTCCTCTCTT  420
            |||| ||||||||||||||||||   ||||||   ||| |||||| | |||||||| | |
Sbjct  361  AAATATTTTACACTTACACCTAA---CACCTC---TACCTCCTCAACCTCCTCCTCCCCT  414

Query  421  CATAATTTCTAATCATAATTTTATTATGTTTTCCTTCTAGTTATCAATCAAAACaaaa  478
            |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct  415  CATAATTTCTAAACATAATTTTATTATGTTTTCCTTCTAATTATCAATCAAACCAAAA  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24093683544


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5