BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22290.1
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479742 jgi|Araly1|479742|fgenesh2_kg.3__2443__AT3G22290.1 2268 0.0
> Ahg479742 jgi|Araly1|479742|fgenesh2_kg.3__2443__AT3G22290.1
Length=1503
Score = 2268 bits (1228), Expect = 0.0
Identities = 1395/1471 (95%), Gaps = 29/1471 (2%)
Strand=Plus/Plus
Query 112 tcccggagatctctctttctcttcttctccatccttcttctctcGGCGCGCGCTTCATCC 171
||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 43 TCCCGGAGATCTCTC-TT-TC-TCTTCTCCATCCTTGTTCTCTCGGCGCGCGCTTCATCC 99
Query 172 CCACCACCTTCGAATTCGTGCCCTTTGAGGGAAGCTGCTAGGATGGGTGTGAAGCAGGCT 231
|| ||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||
Sbjct 100 TCATCACCTTCGAATCCGAGTCCTTTAAGGGAAGTTGCTAGGATGGGTGTGAAGCAGGCT 159
Query 232 CTAAGGAGCATTGATGCGTTTCCAAGAGCAGAGGATCATTTGCTTCAGAAGACACAATCT 291
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 160 CTAAGGAGCATTGATGCGTTTCCAAGAGCAGAGGATCATTTGCTGCAGAAGACACAATCT 219
Query 292 GGCGCTGTTGTATCTATTGTTGGACTTCTTATAATGGCTACTTTGTTCTTACACGAGCTG 351
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GGTGCAGTTGTATCTATTGTTGGACTTCTTATAATGGCTACTTTGTTCTTACACGAGCTG 279
Query 352 AGTTATTATCTTAACACACTTACAGTGCACCAGATGTCAGTGGACTTAAAGCGTGGAGAA 411
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 280 AGTTATTATCTTAACACACTTACTGTGCACCAGATGTCAGTGGACTTAAAGCGTGGAGAA 339
Query 412 ACTCTTCCAATTCATGTAAATATGACGTTTCCATCTTTACCTTGTGATGTACTGAGCGTA 471
|||||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||
Sbjct 340 ACTCTTCCAATTCATGTAAATATGACGTTTCCATCTTTGCCGTGTGATGTATTGAGTGTG 399
Query 472 GATGCTATCGACATGTCAGGGAAGCATGAAGTGGATCTTGATACAAACATTTGGAAGCTC 531
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GATGCTATCGACATGTCGGGGAAGCATGAAGTGGATCTTGATACAAACATTTGGAAGCTC 459
Query 532 CGTCTCAACAGTCATGGTCATATCATAGGCACAGAATATATATCTGATCTTGTTGAAAAG 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 460 CGTCTCAACAGTCATGGTCATATCATTGGCACAGAATATATATCTGATCTTGTTGAAAAG 519
Query 592 GGGCATGAGCATGGCCACTCACCTCACAAGCATGATGGCAAAGAAGAACACAAGAATGAG 651
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGGCATGAGCATGGCCACTCATCTCACAAGCATGATGGCAAAGAAGAACACAAGAATGAG 579
Query 652 ACTGAAACCGAAGCATTGAATATTCTTGGCTTTGACCAAGCTGCTGAGACTATGATTAAA 711
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 580 ACTGAAACCGAAGCATTGAATATTCTTGGCTTTGATCAAGCTGCTGAGACTATGATTAAA 639
Query 712 AAAGTGAAGCAAGCATTGGCAGATGGAGAAGGATGTCGGGTTTATGGTGTCCTAGATGTA 771
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AAGGTGAAGCAAGCATTGGCAGATGGAGAAGGATGTCGGGTTTATGGTGTCCTAGATGTA 699
Query 772 CAACGGGTTGCCGGAAACTTCCATATTTCAGTTCATGGGCTGAACATCTATGTTGCTCAG 831
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 700 CAACGGGTTGCTGGAAACTTCCATATTTCAGTTCACGGGCTGAACATCTATGTTGCTCAG 759
Query 832 ATGATATTTGGCGGGTCCAAAAACGTAAACGTGAGCCATATGATTCACGATCTATCATTT 891
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 760 ATGATATTTGGCGGGTCGAAAAACGTAAACGTGAGCCATATGATTCATGATCTATCCTTT 819
Query 892 GGGCCGAAATACCCCGGAATTCACAACCCACTTGATGACACCAACCGAATACTCCATGAC 951
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 820 GGGCCGAAATACCCTGGAATTCACAACCCACTTGATGACACCAACCGGATACTGCATGAC 879
Query 952 ACCAGTGGAACATTCAAATACTATATTAAGATTGTTCCCACAGAATATAGATATCTTTCA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ACCAGTGGAACATTCAAATACTATATTAAGATTGTTCCCACAGAATATAGATATCTTTCA 939
Query 1012 AAAGACGTACTGTCAACAAATCAGTACTCTGTAACTGAATATTTCACGCCAATGACTGAA 1071
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 940 AAAGACGTACTGTCAACAAATCAGTACTCTGTAACCGAATATTACACGCCAATGACTGAA 999
Query 1072 TTCGACCGTACATGGCCAGCTGTTTACTTCTTATATGATCTTTCACCTATCACTGTGACC 1131
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTTGACCGGACATGGCCAGCTGTCTACTTCTTATATGATCTTTCACCTATCACTGTGACC 1059
Query 1132 ATCAAGGAAGAACGCCGTAGTTTTCTCCACTTAATCACTCGTCTTTGCGCTGTATTAGGC 1191
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1060 ATCAAGGAAGAACGCCGTAGTTTTCTCCACTTAATCACTCGGCTTTGCGCTGTATTAGGT 1119
Query 1192 GGTACATTTGCTTTGACAGGAATGTTAGATCGTTGGATGTTCCGCTTTATTGAATCTTTC 1251
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GGTACCTTTGCTTTGACAGGAATGTTAGATCGTTGGATGTTCCGCTTTATTGAATCTTTC 1179
Query 1252 AACAAGAAGCCGAGTACTAGAGCGTAAACTAGCTGAA-A--CAGAGACAAAACAATGA-G 1307
||||||||| ||||||| ||||| |||||||| |||| | |||||||||||||| || |
Sbjct 1180 AACAAGAAGGCGAGTACCAGAGCATAAACTAGTTGAAGAAACAGAGACAAAACAAAGAAG 1239
Query 1308 AAACaaaaaaaaCCAAAGGAAGGAAGAAGAATCTCTCAAA-TCCCAAAACTTGTATCTGC 1366
||| ||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1240 AAA-AAAAAAA-C-AAAGGAAGGAAGAAGAATCTCTCAAACTCC-AAAACTTGTATCTGC 1295
Query 1367 CTTCTTCAGACAACAACACCCACCAGAGATTCCAGGATTGATGATTACA--TT-A---CT 1420
|||||| |||||||||| || |||||||||||||||||||||||||||| || | ||
Sbjct 1296 CTTCTTGAGACAACAAC-CC-ACCAGAGATTCCAGGATTGATGATTACACATTCATTACT 1353
Query 1421 CAGAAACTCTAGAATCCATGGATATAGt-ttttt---t-ttG--AGTCTCTCTTATGTAT 1473
|||||||||||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 1354 CAGAAACTCTAGAATCCATGGATATAGTGTTTTTGCATCTTCTCAGTCTCTCTTATGTAT 1413
Query 1474 T-ACTCTGATTATCTCTGGTTAAACTAGTAGAGTTAATTTGTAATTTTTATTCACCTTGC 1532
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1414 TTACTCTGATTATCTCTGGTTAAACTAGTAGAGTTAATTTGTAATTTT-ATTCACCTTGC 1472
Query 1533 TTCCTGGGATTTTAACATTTTTGCATCTTTT 1563
|| |||||||||||||||||||||||||||
Sbjct 1473 ATCATGGGATTTTAACATTTTTGCATCTTTT 1503
Score = 73.1 bits (39), Expect = 6e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 18 TAAATGGAGGGTGCAATTAATAAATAAGGAGAGACGGAAAAA 59
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAATTGAGGGTGCAATTAATAAATAAGGAGAGACGGAAAAA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5