BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22300.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479743 jgi|Araly1|479743|fgenesh2_kg.3__2444__AT3G22300.1 1378 0.0
> Ahg479743 jgi|Araly1|479743|fgenesh2_kg.3__2444__AT3G22300.1
Length=942
Score = 1378 bits (746), Expect = 0.0
Identities = 883/947 (93%), Gaps = 17/947 (2%)
Strand=Plus/Plus
Query 1 AATTTGGGGTTTTTCAGATTTCC---TTCAATCTCTCGTCGTCATTTCTTCGTCTCACCG 57
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 AATTTGGGGTTTTTCAGATTTCCTTGTTCAATCTCTCGTCGTCATTTCTCCGTCTCACCG 60
Query 58 TTGAATCTGAAAATGATCGCCGGAGTATTGCGCCGATCTTCACTCCCGTCGAGGCAGACT 117
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTGAATCTGAAAATGATCACCGGAGTATTGCGCCGATCTTCACTACCGTCGAGGCAGACT 120
Query 118 CTCTCCGCCGCGTTAGCCTCCTTCAATTCGTGTATTTCGCACAATCTCACTCCAGCCACC 177
||||||||||||||| ||||||| |||| ||| |||||||| || ||||| |||||||
Sbjct 121 CTCTCCGCCGCGTTAACCTCCTTTGATTCATGTCTTTCGCACCATTTCACTTCAGCCACT 180
Query 178 ACCGGAGCT-TCCGTCAGCTCTCGATTCACTCTCGCGTCGTCTCCTAACTCGTTTGGCAT 236
||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 181 ACCGGAG-TCTCCGTCAGCTCTCGATTCACTCTCTCGTCGTCTCCGAACTCGTTTGGTAT 239
Query 237 CAGAGCGAG-GAACATCCACATTAGATCTGAGCCGTCGATGATTGTTCCCGCAGGAATCG 295
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TGGAGCGAGAGAA-TTCCACATTAGATCTGAGCCGTCGATGATTGTTCCTGCAGGAATCG 298
Query 296 CGTCACAAGGTTACGCCACTGTCACAAAGGATCGCAAAAACGAGATTAAGAAAGCTAAGA 355
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CGTCACAAGGTTACGCCACTGTCACAAGGGATCGCAAAAACGAGATTAAGAAAGCTAAGC 358
Query 356 TTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTCCAGAAAG 415
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TTAAAATTTCTCCAGACAATGTCAGACCATTGAGTAGGAAGGAGATCGCTCTACAGAAAG 418
Query 416 AGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACAAAGATTTGTATAGCGATTCGGT 475
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 419 AGGCAGCAGAAGAAAGCACATCAAAGATAAAAGGAACTAAGATTTGCATAGCGATTCGGT 478
Query 476 CTTTTGTTAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTCGCAA 535
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 CTTTCGATAACCCGGAAAAGCAAGCTTGGTGTCTTCCTCCTCACACTCGTAAAGTTGCAA 538
Query 536 TGCCCGATACACGAACTCTGTACACGGTGCTAAGATCGCCTCACGTCGATAAGAAGTCTA 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 TGCCCGATACACGAACTCTGTACACGGTGCTACGATCGCCTCACGTCGATAAGAAGTCTA 598
Query 596 GAGAACAGTTTGAGATGAGGTTCAAGAAACGGTTTCTTGTCATCAAAGCTCAGAGTCATG 655
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 GAGAACAGTTTGAGATGCGGTTCAAGAAACGTTTTCTTGTCATCAAAGCTCAGAGTCATG 658
Query 656 AGTTGAGCAAGAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAAC 715
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AATTGAGCAAAAAGCTGTTTTGGTTAAAACGTTATCGTATTCTTGGAGCTCAATATGAAC 718
Query 716 TCCAGTTCCATTGCAAGACCCGTTTGGATATGACTCAAGTGTTAGGCAACATCAATGGCT 775
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 719 TCCAATTCCATTGCAAGACTCGTTTGGACATGACTCAAGTGTTAGGCAACATCAATGGCT 778
Query 776 CCACCACCAATGCTTACTGAGATGGCTAAAGACATCATTTTGTAGAAGTTTCAAGACCCA 835
||| || | | || | |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 779 CCAGCA--A-TACTCAATGAGTTGGCTAAAGATATCATTTTGTAGAAGTTTCAAGACCCA 835
Query 836 ACCGGGTACTAT--GCAATAATTTCGAACCTTACGGATCCATGAA---AC-CAGC-TTTG 888
|||||||||| |||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 836 ACCGGGTACTCCCCGCAATAATTTTGAACCTTACGGATCCATGAACTCACTCAGCCTTTG 895
Query 889 CTTCACATCAGATCAAGTAGTTATTTTCTTGCTTAGTATAAACATGT 935
|||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 896 CTTCACATCAGATCAACTAGCTCTTTTCTTGCTTAGTATAAACATGT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5