BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22310.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479744 jgi|Araly1|479744|fgenesh2_kg.3__2445__AT3G22310.1 3210 0.0
Ahg479746 jgi|Araly1|479746|fgenesh2_kg.3__2447__AT3G22330.1 1559 0.0
Ahg333427 jgi|Araly1|333427|fgenesh1_pm.C_scaffold_998000001 566 3e-160
> Ahg479744 jgi|Araly1|479744|fgenesh2_kg.3__2445__AT3G22310.1
Length=2157
Score = 3210 bits (1738), Expect = 0.0
Identities = 2031/2167 (94%), Gaps = 41/2167 (2%)
Strand=Plus/Plus
Query 1 AAACCCTTTTGCCGTCTCCCTAAAACCCTAATTCTCATTTCTGGGGTTTCACATTTCATC 60
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAACCCTTTTGCCGTCTCTCTAAAACCCTAATTCTCATTTTTGGGGTTTCACATTTCATC 60
Query 61 TTCA---CCAGAATCCATCACACTCTCTGAAATCTGAAAATGATTAGCACAGTACTTCGC 117
|||| ||| || ||||||| |||| | ||||||||||||||||||||||||||| | |
Sbjct 61 TTCATCGCCAAAACCCATCACTCTCTATCAAATCTGAAAATGATTAGCACAGTACTCCAC 120
Query 118 CGATCTATCCTTGGTACGTCAAGGCGTACTCTCGCCGCTTCGGTGACCTCCATTAACGCA 177
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CGATCTTTCCTTGGTACGTCAAGGCGTACTCTCGCCGCTTCAGTGACCTCCATTAACGCG 180
Query 178 GCTCTATTTCATAACCTTGCTCCA---GCCGCCG---C--C-ACAGTCTCCGATCTAGCA 228
|||||||||||||||||||||||| ||||||| | | ||||||||||||||||||
Sbjct 181 GCTCTATTTCATAACCTTGCTCCAGCCGCCGCCGCCACTGCTACAGTCTCCGATCTAGCA 240
Query 229 AATGGAGCTACTAATGTCAAGTCTCTCCCTTC-GAATTCGAGCCCTTTTGGTGTTAAAGT 287
||||||||||| ||||| ||||||||||| || |||||||| ||| |||||||||||||
Sbjct 241 AATGGAGCTACCAATGTTAAGTCTCTCCC-TCTGAATTCGAACCCGTTTGGTGTTAAAGG 299
Query 288 GAGAGACTTTCATGTTAAATCTGTACCGTCGGAGTTTAGATCGTCGATTGTTTCTTCTGC 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 GAGAGACTTTCATGTTAAATCTGTACCGTCGGAGTTTAGATCGTCGATTGTTTCACCTGC 359
Query 348 GGGATTCGCGGCTCAAGAGTATGCTCCTTCTTATGAG-A-A-CGATGGAGGGATTGGAGA 404
||| |||||||||||||||||||||||||| |||||| | | ||||||||||||||| ||
Sbjct 360 GGGGTTCGCGGCTCAAGAGTATGCTCCTTCGTATGAGAACAGCGATGGAGGGATTGGTGA 419
Query 405 TTCGGAGAGTGTTGGTAGCAGCGGTGGTGGTGATGGGCTTGCGATAGCTGATCTTGGTAT 464
|||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||| ||
Sbjct 420 TTCGGAGAGTGTTGGTAGTAGCAGTGGTGGTGATGGGCTTGCGATATCTGAGCTTGGAAT 479
Query 465 ATCTCCGGAGATTGTTAAAGCTTTGAAGGGTAGGGGTATTGAGAAACTCTTTCCTATTCA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCTCCGGAGATTGTTAAAGCTTTGAAGGGTAGGGGTATTGAGAAACTCTTTCCTATTCA 539
Query 525 GAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGG 584
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 540 GAAAGCTGTGTTGGAGCCAGCGATGCAAGGTCGTGATATGATTGGTCGTGCAAGGACTGG 599
Query 585 AACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACAAAATCATCAAATTCAACGC 644
||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 600 AACAGGAAAGACTCTTGCTTTTGGGATTCCTGTCATTGACAAAATCATCAAATTCAACGC 659
Query 645 TAAACATGGTCGTGGGAAGAATCCTCAGTGCTTGGTTTTGGCACCGACGAGGGAGCTTGC 704
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TAAACATGGACGTGGGAAGAATCCTCAGTGCTTGGTTTTGGCACCGACGAGGGAACTTGC 719
Query 705 TCGTCAGGTTGAGAAAGAGTTCAGGGAATCTGCTCCAAGTTTGGATACTATTTGTCTCTA 764
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCGTCAGGTTGAGAAGGAGTTTAGGGAATCTGCTCCAAGTTTGGATACTATTTGTCTCTA 779
Query 765 TGGAGGTACACCAATCGGGCAACAAATGAGGGAGCTGAACTATGGTATTGATGTGGCGGT 824
|||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 780 TGGAGGTACACCGATTGGGCAGCAAATGAGGGAGCTTAACTATGGTATTGATGTGGCGGT 839
Query 825 TGGAACTCCTGGTCGTATCATTGATCTGATGAAAAGGGGAGCTTTGAATCTATCAGAGGT 884
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 840 TGGAACTCCAGGTCGTATCATTGATCTTATGAAAAGAGGAGCTTTGAATCTATCAGAGGT 899
Query 885 TCAGTTTGTGGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGATTTGCGGAAGATGT 944
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCAGTTTGTGGTTCTGGATGAAGCTGATCAGATGCTTCAAGTTGGATTTGCGGAAGATGT 959
Query 945 TGAAATAATATTGCAGAAGTTGCCAGCGAAGCGTCAGAGTATGATGTTTTCTGCAACAAT 1004
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 960 CGAAATAATATTGCAGAAGTTGCCAGAGAAACGTCAGAGTATGATGTTTTCTGCAACAAT 1019
Query 1005 GCCAAGTTGGATCAGATCTCTCACCAAGAAGTACCTGAACAATCCTTTGACAATTGATCT 1064
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCCGAGTTGGATCAGATCTCTTACCAAGAAGTACCTGAACAATCCTTTGACAATTGATCT 1079
Query 1065 TGTTGGAGATTCAGATCAGAAACTTGCAGATGGGATTACTATGTATTCTATCGCTGCAGA 1124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTTGGAGATTCGGATCAGAAACTTGCAGATGGGATTACTATGTATTCTATCGCTGCAGA 1139
Query 1125 TTCTTATGGAAGAGCATCCATCATTGGTCCTCTTGTAAAGGAACATGGCAAAGGAGGAAA 1184
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1140 TTCTTATGGAAGAGCATCCATCATTGGTCCTCTTGTAAACGAGCATGGCAAAGGAGGAAA 1199
Query 1185 ATGCATTGTCTTTACCCAAACAAAACGTGATGCAGATCGCCTTGCATTTGGATTGGCAAA 1244
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1200 GTGTATTGTCTTTACCCAAACAAAACGGGATGCGGATCGCCTTGCATTTGGATTGGCGAA 1259
Query 1245 AAGCTAT-AAATGTGAAGCTTTACACGGTGACATATCTCAAGCTCAGAGAGAAAGAACAC 1303
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AAGCT-TCAAATGTGAAGCTTTACACGGTGACATATCCCAAGCTCAGAGAGAAAGAACAC 1318
Query 1304 TTGCTGGTTTCAGGGATGGGAATTTCAGTATTCTTGTTGCAACTGATGTTGCTGCCCGTG 1363
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 TTGCTGGCTTCAGGGATGGGAATTTCAATATTCTTGTTGCAACTGATGTTGCTGCCCGTG 1378
Query 1364 GACTTGATGTACCTAATGTCGATTTAGTAATTCATTATGAGCTTCCTAATAACACGGAGA 1423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1379 GACTTGATGTACCTAATGTCGATTTGGTAATTCATTATGAGCTTCCTAATAACACTGAGA 1438
Query 1424 CGTTTGTTCACCGAACGGGGCGAACTGGTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCA 1483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1439 CGTTTGTTCACCGAACGGGGCGAACAGGTCGTGCTGGAAAGAAAGGAAGCGCGATCCTCA 1498
Query 1484 TCCACGGTCAAGATCAAACCAGGGCTGTTAAAATGATTGAGAAAGAAGTCGGAAGCAGAT 1543
||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 TCCACGGTCAAGAGCAATCTAGGGCTGTTAAAATGATTGAGAAAGAAGTTGGAAGCAGAT 1558
Query 1544 TCAATGAGCTGCCTAGCATTGCTGTGGAAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAG 1603
|||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1559 TCAATGAGCTCCCTAGCATTGCGGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAGTAG 1618
Query 1604 GTGCTAGATCTGGTGGGTCGTTCGGAGGAGGTCGATCAGGCGGTGGTGGGTATGGTAGTT 1663
||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||
Sbjct 1619 GTGCTAGATCTGGTGGGTCCTTTGGAGGAGGTCGTTCAGGCGGTGGT---TATGGTAGTT 1675
Query 1664 ACGGTAGCAGCAGTGGCCGTTca------ggtggtggtagttatggaggttatggtggca 1717
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1676 ACGGTAGCAGCAGTGGCCGTTCAGGTGGTGGTGGTGGTAGTTATGGAGGATATGGTGGCA 1735
Query 1718 gcagtggccgttcaggtggtggtggtggtAGTTATGGAGGTTCAGGGGGATCAAGCAGCC 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GCAGTGGCCGTTCAGGTGGTGGTGGTGGTAGTTATGGAGGTTCAGGGGGATCAAGCAGCC 1795
Query 1778 GTTACTCTGGTGGTTCAGACCGCTCATCTGGTTTCGGAAGCTTTGGTTCAGGCGGTTCTT 1837
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1796 GTTACTCTGGTGGTTCAGACCGCTCATCTGGTTTCGGAGGCTTTGGTTCAGGCGGTTC-- 1853
Query 1838 CAGGAG-GAT-TT--GGTTCAGACCGTTCTTCTCAGTCAAGTGGAAGGAGCAGCTTTGGT 1893
|| | | | || || | |||||||||||||||||||||||||||||||||||
Sbjct 1854 -AG-ACCGTTCTTCAGGAGGATTTGGTTCTTCTCAGTCAAGTGGAAGGAGCAGCTTTGGT 1911
Query 1894 GGGTTTGGATCAAACGATGGTAAAAGATCTTACTGAGAGAAGTGTTGTGTTGGTTTTGAC 1953
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1912 GGGTTTGGATCAAACGATGGTAAAAGATCTTACTGAGAGAAGTGTTGGGTGGGTTTAGAC 1971
Query 1954 CCGACTC-AGCAATAATGGAGTTGACTTAGGAGAGAACTCGGTATCTC-GAGTTGAGTAG 2011
||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1972 CCGACCCGA-CAATAATGGAGTTGACTTAGGAGAGAACTCGGTATCTCTGAGTTGAGTAG 2030
Query 2012 TTT-A-CAAGGAGTCGAGCTATATATAAATTCTGTAGCTACTTCTTGTCTCATAAACCAA 2069
||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 2031 TTTTAACAAGGAGTCGAGCTATATATAAAATCTGTAGCTGCTTCTTGTCTCATAAACAAA 2090
Query 2070 CATAAGTTATATCATTATTTCATATCCTCTAATTCATTTTTATTTCTCAATTTGAGTGAA 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 CATAAGTTATATCATTATTTCATATCCTCTAATTCATTTTTATTTCTCAATTTGAGTGAA 2150
Query 2130 ATGTGTT 2136
|||||||
Sbjct 2151 ATGTGTT 2157
> Ahg479746 jgi|Araly1|479746|fgenesh2_kg.3__2447__AT3G22330.1
Length=2110
Score = 1559 bits (844), Expect = 0.0
Identities = 1090/1209 (90%), Gaps = 16/1209 (1%)
Strand=Plus/Plus
Query 434 GTGATGGGCTTGCGATAGCTGATCTTGGTATATCTCCGGAGATTGTTAAAGCTTTGAAG- 492
||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 391 GTGATGGGCTTGCGATATCTGAGCTTGGAATATCTCCGGAGATTGTTAAAGCTTTG-AGT 449
Query 493 GGTAGGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCGATGGAG 552
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 450 AGTAAGGGTATTGAGAAACTCTTTCCTATTCAGAAAGCTGTGTTGGAGCCAGCTATGGAG 509
Query 553 GGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 612
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 510 GGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATT 569
Query 613 CCTATTATTGACAAAATCATCAAATTCAACGCTAAACATGGTCGTGGGAAGAATCCTCAG 672
|| || ||||||||||||||||||| ||||||||||||||| || |||| |||||| |
Sbjct 570 CCAATCATTGACAAAATCATCAAATACAACGCTAAACATGGACGAGGGAGGAATCCGCTT 629
Query 673 TGCTTGGTTTTGGCACCGACGAGGGAGCTTGCTCGTCAGGTTGAGAAAGAGTTCAGGGAA 732
|||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 630 TGCTTGGTTTTGGCACCGACAAGGGAGCTTGCTCGCCAGGTCGAGAAGGAGTTTAGGGAA 689
Query 733 TCTGCTCCAAGTTTGGATACTATTTGTCTCTATGGAGGTACACCAATCGGGCAACAAATG 792
|||||||| || ||||||||||||||||| |||||||||||||| || || || ||||||
Sbjct 690 TCTGCTCCGAGCTTGGATACTATTTGTCTTTATGGAGGTACACCGATTGGACAGCAAATG 749
Query 793 AGGGAGCT-GAACTATGGTATTGATGTGGCGGTTGGAACTCCTGGTCGTATCATTGATCT 851
||| |||| || ||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 750 AGGCAGCTTGA-CTATGGTGTTGATGTGGCGGTTGGAACTCCTGGTCGTGTTATTGATCT 808
Query 852 GATGAAAAGGGGAGCTTTGAATCTATCAGAGGTTCAGTTTGTGGTTCTTGATGAAGCTGA 911
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 809 GATGAAAAGGGGAGCTTTGAATCTGTCAGAGGTTCAGTTTGTGGTTCTGGATGAAGCTGA 868
Query 912 TCAGATGCTTCAAGTTGGATTTGCGGAAGATGTTGAAATAATATTGCAGAAGTTGCCAGC 971
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||| |
Sbjct 869 TCAGATGCTTCAAGTTGGATTTGCCGAGGATGTTGAAATAATATTGGAAAAGTTGCCTGA 928
Query 972 GAAGCGTCAGAGTATGATGTTTTCTGCAACAATGCCAAGTTGGATCAGATCTCTCACCAA 1031
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 929 GAAACGTCAGAGTATGATGTTTTCTGCTACAATGCCGAGTTGGATCAGATCTCTCACCAA 988
Query 1032 GAAGTACCTGAACAATCCTTTGACAATTGATCTTGTTGGAGATTCAGATCAGAAACTTGC 1091
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 989 GAAGTACCTGAATAATCCTTTGACAATTGATCTTGTTGGAGATTCTGATCAGAAACTCGC 1048
Query 1092 AGATGGGATTACTATGTATTCTATCGCT-GCAGATTCTTATGGAAGAGCATCCATCATTG 1150
|||||| ||||| | |||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 1049 AGATGGAATTACGACGTATTCTATCA-TAGCAGATTCTTATGGAAGAGCATCCATTATTG 1107
Query 1151 GTCCTCTTGTAA-AGGAACATGGC-AAAGGAGGAAAATGCATTGTCTTTACCCAAACAAA 1208
|||||||||||| || | |||| | |||||||||||||||||||| ||||| ||||||||
Sbjct 1108 GTCCTCTTGTAACAG-AGCATG-CTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAA 1165
Query 1209 ACGTGATGCAGATCGCCTTGCATTTGGATTGGCAAAAAGCTAT-AAATGTGAAGCTTTAC 1267
||| ||||| ||||||||| ||| || |||||| | ||||| | ||||| ||||||||||
Sbjct 1166 ACGAGATGCTGATCGCCTTTCATATGCATTGGCGAGAAGCT-TCAAATGCGAAGCTTTAC 1224
Query 1268 ACGGTGACATATCTCA-AGCTCAGAGAGAAAGAACACTTGCTGGTTTCAGGGATGGGAAT 1326
||||||| ||||| || || |||||| |||||||| |||||||||||| | |||||| ||
Sbjct 1225 ACGGTGATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCAT 1283
Query 1327 TTCAGTATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGAT 1386
|| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1284 TTTAATATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTTGAT 1343
Query 1387 TT-AGTAATTCATTATGAGCTTCCTAATAACACGGAGACGTTTGTTCACCGAACGGGGCG 1445
|| | | ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1344 TTGA-TCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCG 1402
Query 1446 AACTGGTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCATCCACGGTCAAGATCAAACCAG 1505
||| ||||||||||||||||||||||| || ||||||||| || ||||||||||| ||||
Sbjct 1403 AACGGGTCGTGCTGGAAAGAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAG 1462
Query 1506 GGCTGTTAAAATGATTGAGAAAGAAGTCGGAAGCAGATTCAATGAGCTGCCTAGCATTGC 1565
|||||| ||||| ||||||| |||||| || ||| |||||| ||||| |||||||||||
Sbjct 1463 GGCTGTAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGC 1522
Query 1566 TGTGGAAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCGTT 1625
||||||| | |||||||||||||||||||||||| ||||| || |||| |||||||| ||
Sbjct 1523 TGTGGAACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTT 1582
Query 1626 CGGAGGAGG 1634
||||||||
Sbjct 1583 TGGAGGAGG 1591
> Ahg333427 jgi|Araly1|333427|fgenesh1_pm.C_scaffold_998000001
Length=852
Score = 566 bits (306), Expect = 3e-160
Identities = 426/484 (88%), Gaps = 8/484 (2%)
Strand=Plus/Plus
Query 1155 TCTTGTAAAGGAACATGGC-AAAGGAGGAAAATGCATTGTCTTTACCCAAACAAAACGTG 1213
|||||| |||| ||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 9 TCTTGTGCAGGAGCAT-GCTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAG 67
Query 1214 ATGCAGATCGCCTTGCATTTGGATTGGCAAAAAGCTAT-AAATGTGAAGCTTTACACGGT 1272
|||| ||||||||| ||| || |||||| | ||||| | ||||| |||||||||||||||
Sbjct 68 ATGCTGATCGCCTTTCATATGCATTGGCGAGAAGCT-TCAAATGCGAAGCTTTACACGGT 126
Query 1273 GACATATCTCA-AGCTCAGAGAGAAAGAACACTTGCTGGTTTCAGGGATGGGAATTTCAG 1331
|| ||||| || || |||||| |||||||| |||||||||||| | |||||| ||||||
Sbjct 127 GATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAA 185
Query 1332 TATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGATTT-AG 1390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 186 TATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTCGATTTGA- 244
Query 1391 TAATTCATTATGAGCTTCCTAATAACACGGAGACGTTTGTTCACCGAACGGGGCGAACTG 1450
| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 245 TCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCGAACGG 304
Query 1451 GTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCATCCACGGTCAAGATCAAACCAGGGCTG 1510
|||||||||||||||||||||| || ||||||||| || ||||||||||| |||||||||
Sbjct 305 GTCGTGCTGGAAAGAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAGGGCTG 364
Query 1511 TTAAAATGATTGAGAAAGAAGTCGGAAGCAGATTCAATGAGCTGCCTAGCATTGCTGTGG 1570
| ||||| ||||||| |||||| || ||| |||||| ||||| ||||||||||||||||
Sbjct 365 TAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGCTGTGG 424
Query 1571 AAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCGTTCGGAG 1630
|| | |||||||||||||||||||||||| ||||| || |||| |||||||| || ||||
Sbjct 425 AACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTTTGGAG 484
Query 1631 GAGG 1634
||||
Sbjct 485 GAGG 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5