BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22320.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479745 jgi|Araly1|479745|fgenesh2_kg.3__2446__AT3G22320.1 1432 0.0
Ahg930212 jgi|Araly1|930212|scaffold_302669.1 56.5 3e-07
> Ahg479745 jgi|Araly1|479745|fgenesh2_kg.3__2446__AT3G22320.1
Length=934
Score = 1432 bits (775), Expect = 0.0
Identities = 893/947 (94%), Gaps = 19/947 (2%)
Strand=Plus/Plus
Query 1 AGAATTGAGAAAAGGGTTCGAGGTAAAAGG-AGAAAGCTTGAAACGCCGcttcttcttct 59
||||| ||||||||||||| || ||| | |||||||||||||||||||||||||||
Sbjct 1 AGAATCGAGAAAAGGGTTC--GG----AGGTA-AAAGCTTGAAACGCCGCTTCTTCTTCT 53
Query 60 tcttcttcCACTGTCGT-TCTCTCTGTAAATCGCTTCTTCAATCATCTCTGTGGATTTGT 118
||||| || | || | |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 54 TCTTCGTCTTC-CTC-TATCTCTCTGTAAATCTCTTCTTCAACCATCTCTGTGGATTTGT 111
Query 119 CTCTATTC-A-TAACTTGGTGAAGAAGATGTTGACGGAAGAGGAGCTCAAAAGATTGTAC 176
|||||||| | ||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 112 CTCTATTCAATTAA-TTGGTGAAGAAGATGTTGACGGAAGAAGAAATCAAAAGACTGTAC 170
Query 177 AGAATCCAGAAGACGTTGATGCAGATGTTAAGGGATCGTGGATATTTTATCGCGGATTCT 236
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 171 AGAATCCAGAAGACGTTGATGCAGATGTTAAAGGATCGTGGCTATTTTATAGCGGATTCT 230
Query 237 GAACTTACGATGACTAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GAACTTACGATGACGAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 290
Query 297 GATCTTGTTACTCTTAAGGCTAAGCGAAATGATAATAGTGATCAGCTCTATATATTCTTC 356
||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 291 GATTTTGTTACTCTTAAGGTTAAGAGAAATGATAACAGTGATCAGCTCTATATATTCTTC 350
Query 357 CCTGATGAGGCGAAAGTTGGTGTGAAGACGATGAAAATGTACACGAACAGGATGAAATCA 416
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 351 CCTGATGAGGCGAAAGTTGGAGTGAAGACGATGAAGATGTACACGAACAGGATGAAATCA 410
Query 417 GAGAATGTGTT-CAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCGTTTGCTCGAAC 475
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 411 GAGAATGT-TTACAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCTTTTGCTCGAAC 469
Query 476 TTGCATTAGTGAGATCTCTTCTAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 470 TTGCATTAGTGAGATCTCTTCAAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 529
Query 536 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 589
Query 596 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 649
Query 656 TGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 709
Query 716 GAGTGAAACGGCTGGTCGTTATGTTACCTATCGTTATGTTGTATAAGCCAAAGCAAAAGG 775
|||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 710 TAGTGAAACTGCTGGTCGTTATGTTACCTATCGTTACGTTGTATAAGCCAAAACAAAAAG 769
Query 776 CTTTTGTGGATTGTAATGCGAATTGAACGCTGAGAGTTGTGAAACATAAGAGTAATGCTT 835
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 CTTTTGTGGATTGGATTGCGAATTGAACGCT-AGAGTTGTGAAACATAAGAGTAATGCTT 828
Query 836 TTGTACTAAACCAAACTGAT-GACTGTGTTTTATTTTTGTTTGTCCGATAGGAGAAATTA 894
||||| |||||||||||| | |||||||||||||||||||||||| |||| ||||| |||
Sbjct 829 TTGTATTAAACCAAACTGTTTGACTGTGTTTTATTTTTGTTTGTCAGATATGAGAA-TTA 887
Query 895 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 941
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 934
> Ahg930212 jgi|Araly1|930212|scaffold_302669.1
Length=2362
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 606 CTGGAGAGATACACAGTGAAGGAGACACAG 635
||||||||||||||||||||||||||||||
Sbjct 2305 CTGGAGAGATACACAGTGAAGGAGACACAG 2334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5