BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22320.1 Length=942 Score E Sequences producing significant alignments: (Bits) Value Ahg479745 jgi|Araly1|479745|fgenesh2_kg.3__2446__AT3G22320.1 1432 0.0 Ahg930212 jgi|Araly1|930212|scaffold_302669.1 56.5 3e-07 > Ahg479745 jgi|Araly1|479745|fgenesh2_kg.3__2446__AT3G22320.1 Length=934 Score = 1432 bits (775), Expect = 0.0 Identities = 893/947 (94%), Gaps = 19/947 (2%) Strand=Plus/Plus Query 1 AGAATTGAGAAAAGGGTTCGAGGTAAAAGG-AGAAAGCTTGAAACGCCGcttcttcttct 59 ||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||| Sbjct 1 AGAATCGAGAAAAGGGTTC--GG----AGGTA-AAAGCTTGAAACGCCGCTTCTTCTTCT 53 Query 60 tcttcttcCACTGTCGT-TCTCTCTGTAAATCGCTTCTTCAATCATCTCTGTGGATTTGT 118 ||||| || | || | |||||||||||||| ||||||||| ||||||||||||||||| Sbjct 54 TCTTCGTCTTC-CTC-TATCTCTCTGTAAATCTCTTCTTCAACCATCTCTGTGGATTTGT 111 Query 119 CTCTATTC-A-TAACTTGGTGAAGAAGATGTTGACGGAAGAGGAGCTCAAAAGATTGTAC 176 |||||||| | ||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct 112 CTCTATTCAATTAA-TTGGTGAAGAAGATGTTGACGGAAGAAGAAATCAAAAGACTGTAC 170 Query 177 AGAATCCAGAAGACGTTGATGCAGATGTTAAGGGATCGTGGATATTTTATCGCGGATTCT 236 ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| Sbjct 171 AGAATCCAGAAGACGTTGATGCAGATGTTAAAGGATCGTGGCTATTTTATAGCGGATTCT 230 Query 237 GAACTTACGATGACTAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 296 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 GAACTTACGATGACGAAACAACAGTTTATTAGGAAACATGGTGATAACATGAAAAGAGAG 290 Query 297 GATCTTGTTACTCTTAAGGCTAAGCGAAATGATAATAGTGATCAGCTCTATATATTCTTC 356 ||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 291 GATTTTGTTACTCTTAAGGTTAAGAGAAATGATAACAGTGATCAGCTCTATATATTCTTC 350 Query 357 CCTGATGAGGCGAAAGTTGGTGTGAAGACGATGAAAATGTACACGAACAGGATGAAATCA 416 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 351 CCTGATGAGGCGAAAGTTGGAGTGAAGACGATGAAGATGTACACGAACAGGATGAAATCA 410 Query 417 GAGAATGTGTT-CAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCGTTTGCTCGAAC 475 |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 411 GAGAATGT-TTACAGAGCTATTTTGGTTGTGCAACAGAACTTGACCCCTTTTGCTCGAAC 469 Query 476 TTGCATTAGTGAGATCTCTTCTAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 535 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 470 TTGCATTAGTGAGATCTCTTCAAAGTTTCATCTGGAAGTTTTCCAGGAGGCGGAAATGCT 529 Query 536 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 AGTGAACATTAAAGAACATGTTCTTGTTCCTGAGCATCAAGTTCTTACCACTGAAGAGAA 589 Query 596 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GAAAACTTTACTGGAGAGATACACAGTGAAGGAGACACAGCTTCCAAGGATCCAAGTGAC 649 Query 656 TGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 715 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 CGATCCAATCGCAAGATACTTTGGACTAAAACGTGGGCAAGTCGTGAAGATCATTCGTCC 709 Query 716 GAGTGAAACGGCTGGTCGTTATGTTACCTATCGTTATGTTGTATAAGCCAAAGCAAAAGG 775 |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| | Sbjct 710 TAGTGAAACTGCTGGTCGTTATGTTACCTATCGTTACGTTGTATAAGCCAAAACAAAAAG 769 Query 776 CTTTTGTGGATTGTAATGCGAATTGAACGCTGAGAGTTGTGAAACATAAGAGTAATGCTT 835 ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 770 CTTTTGTGGATTGGATTGCGAATTGAACGCT-AGAGTTGTGAAACATAAGAGTAATGCTT 828 Query 836 TTGTACTAAACCAAACTGAT-GACTGTGTTTTATTTTTGTTTGTCCGATAGGAGAAATTA 894 ||||| |||||||||||| | |||||||||||||||||||||||| |||| ||||| ||| Sbjct 829 TTGTATTAAACCAAACTGTTTGACTGTGTTTTATTTTTGTTTGTCAGATATGAGAA-TTA 887 Query 895 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 941 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 AAGCTTGAAACAACTTATTTGTATTAGTTTTCTATCCAAAAACTTGC 934 > Ahg930212 jgi|Araly1|930212|scaffold_302669.1 Length=2362 Score = 56.5 bits (30), Expect = 3e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 606 CTGGAGAGATACACAGTGAAGGAGACACAG 635 |||||||||||||||||||||||||||||| Sbjct 2305 CTGGAGAGATACACAGTGAAGGAGACACAG 2334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34958714889 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5