BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22345.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479747 jgi|Araly1|479747|fgenesh2_kg.3__2448__AT3G22345.1 1729 0.0
Ahg887424 jgi|Araly1|887424|Al_scaffold_0998_2 828 0.0
> Ahg479747 jgi|Araly1|479747|fgenesh2_kg.3__2448__AT3G22345.1
Length=1241
Score = 1729 bits (936), Expect = 0.0
Identities = 1167/1272 (92%), Gaps = 42/1272 (3%)
Strand=Plus/Plus
Query 1 ATGGCAACGGCGCCGAAGAAGAAG---TTGATTAGTTCCGACAACGATACAGAGTGGTCG 57
||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATGGAGCCGAAGAAGAAGAACTTGATTAGTTCCGACAACGATACAGAGTGGTCG 60
Query 58 CCGGTTCTTGCCCCTGACCTGATTCGATCGATCTTCGAACGTTTGAACTTTGCGGAGTTT 117
||||| |||||||| |||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 61 CCGGTGCTTGCCCCCGACCTGATTCGATCGATCTTAGAACGCTTGAACTTTGTAGAGTTT 120
Query 118 CATCGAGCTATGTCAATTTCTTTAGATTGGTATTCCACTGCGGAATTATGCTACAGACAA 177
|||||||| | ||| || |||| ||||||||||||||| || |||||||||||||| |||
Sbjct 121 CATCGAGCCAGGTCCATCTCTTCAGATTGGTATTCCACAGCCGAATTATGCTACAGCCAA 180
Query 178 AACCCAACTCCATGGCTCATTCTCTTTTCAAACTATAGACATATTTCGTGTAGGTTGTTT 237
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 181 AATCCAACTCCATGGCTCATTCTCTTTTCAAACTATAGCCATATTTCGTGTAAGTTGTTT 240
Query 238 GATCCTCTTCATGACAAAACCTACGTAATACGAGACCTAGGGTTTGATTTCCATAGGAGT 297
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GATCCTCTCCATGACAAAACCTACGTAATAAGAGACCTAGGGTTTGATTTCCATAGGAGT 300
Query 298 TGTTGTTTGGCTACTTCTGGTAGCTGGTTGTTGATGTTAGATCATAGAACCGATTTTTAT 357
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CGTTGTTTGGCTACTTCTGGTAGCTGGTTCTTGATGTTAGATCATAGAACCGATTTTTAT 360
Query 358 CTTTTGAATCTGTTTACTCGAGAGAGGATTTGTCTTCCGACTTTGGAAGCAATCGATGGA 417
||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 361 CTTTTGAATCTATTTACTCGAGAGAGGATTCGTCTTCCGACTTTGGAAGCAATGGATGGA 420
Query 418 TGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCGT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACTTATCAA 480
Query 478 GAAGGCTATAGAAGTTATTCTTCTGGTCTAAGCACCAAAGTTGTAATAGAGAATGCGGTG 537
| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 481 GGAGGCTATGGAAGTTATTCTTCTGGTGAAAGCACCAAAGTTATAATAGAGAATGCGGTT 540
Query 538 TTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCATTGAGTGCTTCTTT 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCCTTGAGTGCTTCTTT 600
Query 598 GCATATCATAAGAAAGGAGATAATAACAAGACCTGGAAAGTGATTCAATTAAAGAAGAAT 657
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 601 GCATATCATAAGAAAGGAGATAATAACAACAGCTGGAAAGTGTTTCAATTAAAGAAGAAC 660
Query 658 GAAGAG-TGCTCCGATATAGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAATCCAAATCT 716
||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 661 CAAG-GCTGCTCCGATATGGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAGTCCAAGTCT 719
Query 717 AAACATTACTGTTTTTGATTTCTCTAGT-G-G-TTCTCCAAATGAATGTGCAAGTTTCAC 773
||||||||||||||| |||||||||||| | | |||||| ||||||||||||||||||||
Sbjct 720 AAACATTACTGTTTTAGATTTCTCTAGTTGTGATTCTCCTAATGAATGTGCAAGTTTCAC 779
Query 774 ATCTCAGGATATTGGTCTCACATTATATCCACTATCTTGTTTCGGCCATCTTGTTATAAC 833
| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 AACTCCGGAT---GGTCTCACATTATTTCCACTATCTTGTTTCGGCCATCTTGTTATAAC 836
Query 834 TTTGTCCGGAGAGGTTTTGCTGATCAAAACCC-GCCGATATGGGATATATTCCTTTGATG 892
||||||||||||||||||| |||||||| || |||||| ||||||| || ||||||||
Sbjct 837 TTTGTCCGGAGAGGTTTTGATGATCAAA-CCAAGCCGATTTGGGATACCTTTCTTTGATG 895
Query 893 TTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATTTATTCTTTAGGGAATGAAG 952
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 896 TTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATATATTCTTTAGGGAACGAAG 955
Query 953 CAATT-CTTTTGGATCTAGGAACAACGATCGCAGCCAAAGATGGTTTTGGATAAAACAGC 1011
|| || |||||||||||||| ||||||||||||||||||||| | | |
Sbjct 956 CA-TTGCTTTTGGATCTAGGTACAACGATCGCAGCCAAAGAT--T-----------C--C 999
Query 1012 TTATATTTAAGTAATATACAATGGGAGTAGTTTATGCAATGAAAA-CAGTAATTACGTTT 1070
| ||| | | || ||||||||||||| |||||||| |||| ||||| ||||||||
Sbjct 1000 TCATA-----G-A-TA--CAATGGGAGTAGTATATGCAAT-AAAAGCAGTAGTTACGTTT 1049
Query 1071 ACGATTTTCTTAGGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAGATTTATCGCCAG 1130
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1050 ACGATTTTCTTAGGAGGTTGGTTGTCCAACG-TTTCAACACCTTGCAGATTTATCGCCAG 1108
Query 1131 TGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAATCGTTGCTCTAAA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAATCGTTGCTCTAAA 1168
Query 1191 GCTATCTAGTTTTATGTTTTTGGTAAGGATTATTTCTCTTACATTTTGCTACGTTTTATG 1250
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GCTATCTAGTTTTGTGTTTTTGGTAAGGATTATTTCTCTTACATTTTGCTACGTTTTATG 1228
Query 1251 TTTAGGGTATAA 1262
|||||||||||
Sbjct 1229 ATTAGGGTATAA 1240
> Ahg887424 jgi|Araly1|887424|Al_scaffold_0998_2
Length=726
Score = 828 bits (448), Expect = 0.0
Identities = 544/589 (92%), Gaps = 12/589 (2%)
Strand=Plus/Plus
Query 412 GATGGATGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACT 471
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GATGGACGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACT 63
Query 472 TATCGTGAAGGCTATAGAAGTTATTCTTCTGGTCTAAGCACCAAAGTTGTAATAGAGAAT 531
|||| | ||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 64 TATCAAGGAGGCTATGGAAGTTATTCTTCTGGTGAAAGCACCAAAGTTATAATAGAGAAT 123
Query 532 GCGGTGTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCATTGAGTGC 591
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 124 GCGGTTTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCCTTGAGTGC 183
Query 592 TTCTTTGCATATCATAAGAAAGGAGATAATAACAAGACCTGGAAAGTGATTCAATTAAAG 651
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 184 TTCTTTGCATATCATAAGAAAGGAGATAATAACAAGAGCTGGAAAGTGTTTCAATTAAAG 243
Query 652 AAGAATGAAGAG-TGCTCCGATATAGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAATCC 710
|||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 244 AAGAATCAAG-GCTGCTCCGATATGGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAGTCC 302
Query 711 AAATCTAAACATTACTGTTTTTGATTTCTCTAGTGGT--T-CTCCAAATGAATGTGCAAG 767
|| ||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||
Sbjct 303 AAGTCTAAACATTACTATTTTTGATTTCTCTTGTGGTGGTTCTCCAAATGAATGTGCAAG 362
Query 768 TTTCACATCTCAGGATATTGGTCTCACATTATATCCACTATCTTGTTTCGGCCATCTTGT 827
||||||| ||| |||| ||||||||||||| |||||||| | ||||||||||||||||
Sbjct 363 TTTCACAACTCCGGAT---GGTCTCACATTATTTCCACTATATGGTTTCGGCCATCTTGT 419
Query 828 TATAACTTTGTCCGGAGAGGTTTTGCTGATCAAAACCCGC-CGATATGGGATATATTCCT 886
||||||||||||||||||||||||| |||||||| ||||| | || || |||| |||||
Sbjct 420 TATAACTTTGTCCGGAGAGGTTTTGATGATCAAACCCCGCGC-ATTTGCGATACCTTCCT 478
Query 887 TTGATGTTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATTTATTCTTTAGGGA 946
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 TTGATATTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATATATTCTTTAGGGA 538
Query 947 ATGAAGCAATT-CTTTTGGATCTAGGAACAACGATCGCAGCCAAAGATG 994
| |||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 539 ACGAAGCA-TTGCTTTTGGATCTAGGAACAACGGTCGCAGCCAAAGATG 586
Score = 255 bits (138), Expect = 4e-67
Identities = 140/141 (99%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 1059 GTAATTACGTTTACGATTTTCTTAGGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAG 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 586 GTAATTACGTTTACGATTTTCTTAAGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAG 645
Query 1119 ATTTATCGCCAGTGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAAT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATTTATCGCCAGTGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAAT 705
Query 1179 CGTTGCTCTAAAGCTATCTAG 1199
|||||||||||||||||||||
Sbjct 706 CGTTGCTCTAAAGCTATCTAG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5