BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22350.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930217 jgi|Araly1|930217|scaffold_302674.1 1055 0.0
Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 472 3e-132
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 466 2e-130
Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 398 6e-110
Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1 305 4e-82
Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 161 8e-39
Ahg915313 jgi|Araly1|915313|Al_scaffold_0008_64 159 3e-38
Ahg929561 jgi|Araly1|929561|scaffold_302018.1 152 5e-36
Ahg930677 jgi|Araly1|930677|scaffold_303134.1 117 2e-25
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 113 2e-24
Ahg930817 jgi|Araly1|930817|scaffold_303274.1 108 1e-22
Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612 102 5e-21
Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611 100 2e-20
Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 52.8 5e-06
> Ahg930217 jgi|Araly1|930217|scaffold_302674.1
Length=1162
Score = 1055 bits (571), Expect = 0.0
Identities = 972/1157 (84%), Gaps = 61/1157 (5%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCTTTG-GATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATC 59
||||| |||||||| | ||||||||||||||||||||||| ||| || ||||||||||
Sbjct 27 ATGTCCGATCTTCC-CCGCGATTTGGTAGAAGAAATACTCTCTAGGATTCCGGCCACATC 85
Query 60 TCTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTT 119
| ||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||
Sbjct 86 TGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACAACCGAAAATT 145
Query 120 CAGC-CAGAA-ACACTTTCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAG 177
|| | |||| | |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 146 CA-CTGAGAAGA-ACTTTCGTAAAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAG 203
Query 178 TACAGAGTTTGCTCAATGAATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTTTCAA 237
| || ||| ||||||||| |||||||||| ||| ||||||||||| |||||||| ||
Sbjct 204 TGTAGGGTTCGCTCAATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAGAGTTTAAA 263
Query 238 GGTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAGTCGAA 297
||| |||||||| | ||| ||||| ||||||||| | ||||||| | ||| | ||
Sbjct 264 GGTGCACTTGGCCT-GAAG--GATTCTCATTCTAATACCGAACAAGTCAATATAACCAAA 320
Query 298 GTTTATCACTGTGATGGTTTGTTGTTATGCGCCACCAGG-GACAATAGACTCGTGGTTTG 356
|||| ||||||||||||||||||||||||| ||||| || ||| ||||||| ||||||||
Sbjct 321 GTTTCTCACTGTGATGGTTTGTTGTTATGCACCACC-GGAGACGATAGACTTGTGGTTTG 379
Query 357 GAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTCAAAGA-TGAATGC-AGGAGATAC 414
||||||||||||||||||||||||||||||||||| |||| | || | | || ||||||
Sbjct 380 GAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACACAAA-ACTGGTTACGAG-AGATAC 437
Query 415 TCTACGTTTGCTCTAGGATACGAAAACAACAAATTTTGTCGTCGTAACTACAAAATCTTG 474
|||| |||| || |||| || ||||||||||||| ||| | |||| |||||||||||||
Sbjct 438 TCTAGGTTTTCTTTAGGGTATGAAAACAACAAATCTTG-C--CGTAGCTACAAAATCTTG 494
Query 475 AGG-TATTGGGGTTGG-TTTCACGATCACATACCAGACGACGGCGGACGTTTCAGGTTTG 532
|| | ||||| | ||| ||||| ||| || | | ||||| || |||| |||||||
Sbjct 495 -GGATGTTGGGACCGTATTT-ACGATTACAAACTA-A--ACGGCCGAGGTTTAAGGTTTG 549
Query 533 AAATATATGACTTTAGA-TCTGATTCATGGAAGGTTCTTGATGACGTCCCTGATGACCGC 591
|||| |||||| ||| | |||||||||||||| |||||||||||| || || |||||| |
Sbjct 550 AAATCTATGACATTA-ACTCTGATTCATGGAAAGTTCTTGATGACCTCGCTCATGACCTC 608
Query 592 TTCCCACCAGTAAGT-GTCGTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTAATAA 650
||| ||| |||| | | ||||||||||||||||||||||||||||||||||||| |
Sbjct 609 ATCCTACCGGTAAATTG-CGTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTTTTGT 667
Query 651 AAAGGACTTCTTACGTAGTTTTGATTTTACAACAGAGAG-ATTTAATCATATTGGTCTTC 709
||| |||| |||| |||||||||||||||||| ||||| ||| || ||| || ||||||
Sbjct 668 AAACAACTTATTACTTAGTTTTGATTTTACAACTGAGAGGATTAAA-CATTTTTGTCTTC 726
Query 710 CGCCATCTCGAGATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAG 769
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 727 CGCCATTTCGGGATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAAGAACGACTATCAG 786
Query 770 TGTTACAAGAGATTGAGACATCAAAGATGGAGATATTTGTAACCAATAAAGTTGGTACTG 829
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||| || ||
Sbjct 787 TGTTACAACCGATTGAGAGATCAAAGATGGAGATATTTGTTACCAATAAAGTTGATAGTG 846
Query 830 AAGAAGCTGCTTTGTTGTGGAGCAAATCCTTTATAGTGGATTTACCCATTGGCGGTCA-T 888
||| | ||||||||||||||||||||||||| |||||||||||||||||| | | | |
Sbjct 847 AAGC-G--GCTTTGTTGTGGAGCAAATCCTTTACAGTGGATTTACCCATTGG-GCTTAGT 902
Query 889 TGTTC-TGAGGTTTTCGCGAGTCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTG 947
| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 903 T-TTCCTGAGGTTTTCGCGAGTCTTTTAATTGACGAGGAGAAGAAAGTTGCCTTGTGTTG 961
Query 948 TAATTTAGATTTCGA-GACCGACGGGAACTTGATATTCACTATTGGAGAAGACAATAAAT 1006
|||||||| | | || ||||| | |||||||| ||| |||||||||||| |||| | |||
Sbjct 962 TAATTTAGCTCT-GAAGACCGGCAGGAACTTGGTATACACTATTGGAGAGGACAGTGAAT 1020
Query 1007 ATTACTCAGAAATCCCTTATG------CTACAAACAAGCCATGGTGGTTATGTAGATTTT 1060
||||||||||||||||||||| |||||||| |||| |||||| || ||
Sbjct 1021 ATTACTCAGAAATCCCTTATGTAGAATCTACAAACGAGCCGTGGTGG--AT--AG----- 1071
Query 1061 CTGAAAAATTTACaaaaaaaTGGTGGTGGTTTCCATTTATTTACAATTATGTTCCAAGTT 1120
||| | || ||||| | || | ||||| |||||||||| || ||||||||||||||
Sbjct 1072 CTGCAGAAG--ACAAACCA-TG-T--TGGTTGCCATTTATTTTCAGTTATGTTCCAAGTT 1125
Query 1121 TGGTTCAAATCTTGTAA 1137
|||||||||||||||||
Sbjct 1126 TGGTTCAAATCTTGTAA 1142
> Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173
Length=972
Score = 472 bits (255), Expect = 3e-132
Identities = 486/594 (82%), Gaps = 30/594 (5%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
|||| |||| ||||||| ||||||||||| |||||||| || |||||| | |||||||||
Sbjct 4 ATGTTTGATATTCCTTTAGATTTGGTAGAGGAAATACTATCTAGGGTTCCAGCCACATCT 63
Query 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTC 120
| |||||||||||||| ||||||| || ||||||| || |||| ||| | | ||| |||
Sbjct 64 TTCAAACGATTACGATCGACTTGCAGACGATGGAACGCTCTATTGAAAGACCCAAGATTC 123
Query 121 AGCC-AGAAACACTTTCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAGTA 179
| || |||| ||||||| || ||| ||||||||||||||||||||||||||||| |||||
Sbjct 124 A-CCGAGAAGCACTTTCTTAAAGCACCAAAGGAGTCTATGGTTCTCATGTTGAAAGAGTA 182
Query 180 CAGAGTTTGCT-CAATGAA-TATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTTTCAA 237
|| ||||| | |||| || |||||||||| ||| ||||||||||| |||||||||||
Sbjct 183 TAGGGTTTG-TCCAAT-AAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTCAA 240
Query 238 GGTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAGTCGAA 297
||| |||||||| | || ||||||| ||||||||||||| ||||||| ||||| ||||
Sbjct 241 GGTGCACTTGGCCT--AA-ATGATTCTCATTCTAATTTAGAACAAGTCAAGATAACCGAA 297
Query 298 GTTTATCACTGTGATGGTTTGTTGTTATGCGCCACCAGGGACAATAGACTCGTGGTTTGG 357
|||| |||||| ||||||||||||||||| |||||| |||||||| |||| ||||||||
Sbjct 298 GTTTTTCACTGCAATGGTTTGTTGTTATGCACCACCAAGGACAATACACTCTTGGTTTGG 357
Query 358 AATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTCAAAG-ATGAATGCAGGAGATACT- 415
|||||||||||||||||||||| ||||||||||||||||| | || | | ||||| ||
Sbjct 358 AATCCGTGTTTGGGGGAAACCAAGTGGATCCAACTCAAAGTA-GATTACGGGAGAAACGG 416
Query 416 CTAC--GTTTGCTCTAGGATA---CGAAAACAACAAATTTTGTCGTCGTAACTACAAAAT 470
|| | |||| |||||||||| | |||||||| ||| ||| | |||| |||||||||
Sbjct 417 CTCCAAGTTTTCTCTAGGATATATCCAAAACAACGAATCTTG-C--CGTAGCTACAAAAT 473
Query 471 CTTGAGGTA-TTGGGGTTGGTTTCACGATCACATACCAG-AC-GACGGCGGAC-GTTTCA 526
|||| || | |||| | | || | ||| ||| | || || | | | | ||||
Sbjct 474 CTTGTGG-AGTTGGTATAG-TT--ATGATTACAAATCATCACCGCCC-CAAATAGTTTTG 528
Query 527 GG-TTTGAAATATATGACTTTAGATCTGATTCATGGAAGGTTCTTGATGACGTC 579
|| ||||||||||| || ||||| ||||||||||||| ||||||||||||||||
Sbjct 529 GGGTTTGAAATATACGAGTTTAGTTCTGATTCATGGAGGGTTCTTGATGACGTC 582
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 466 bits (252), Expect = 2e-130
Identities = 772/1007 (77%), Gaps = 99/1007 (10%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
||||| ||||||||||| ||||||||||| ||||||||| |||||||| | |||||||||
Sbjct 24 ATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCACATCT 83
Query 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAA-AACGAAGTTT 119
| |||||||||||||| ||||| | || |||| || ||||||| |||| | | || ||
Sbjct 84 TTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTATT-AAAAGACCAAAAATT 142
Query 120 CAGC-CAGAAACACTTTCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAGT 178
|| | |||| |||| || || ||| ||||||||||||||||||||||||||||| ||||
Sbjct 143 CA-CTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCTATGGTTCTCATGTTGAAAGAGT 201
Query 179 ACAGAGTTTGCTC-AATGAATA-TCAATCTCAATGTTTCTCCTCCATCTGTAGAGTTTCA 236
| || ||||| || ||| || |||||||||| ||| ||||||||||| |||||||| |
Sbjct 202 ATAGGGTTTG-TCCAAT-AAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAA 259
Query 237 AGGTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAGTCGA 296
|||| ||||||| | | |||||||||||| || || ||||||||||||| |||
Sbjct 260 AGGTGCACTTGG--T------T-ATTCCCATTCTAGTTCAGAACAAGTCGAGATAACCGA 310
Query 297 AGTTTAT-CACTGTGATGGTTTGTTGTTATGCGCCACCAGGGACAATAGACTCGTGGTTT 355
|||| || ||||| |||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 311 AGTT-ATTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACAATAGACTCTTGGTTT 369
Query 356 GGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTCAAAGATGAATGCAGGAGATACT 415
|||||||||||||||||||||||| ||| ||||||||||||| ||| | | ||||| |||
Sbjct 370 GGAATCCGTGTTTGGGGGAAACCAAGTGTATCCAACTCAAAGTTGATTACGGGAGAAACT 429
Query 416 -CTAC-G-TTTGCTCTAGGATA---CGAAAACAACAAATTTTGTCGTCGTAACTACAAAA 469
|| | | |||||||||||||| | |||||||| ||| ||| | |||| ||||||||
Sbjct 430 ACTCCAGCTTTGCTCTAGGATATATCCAAAACAACGAATCTTG-C--CGTAGCTACAAAA 486
Query 470 TCTTGAGGTA-TTGGGGTTGGTTTCACGATCAC-ATACCAG-AC-GACGGCG-GACGTTT 524
||||| || | |||| || | | | ||| || | | || || | | | || ||||
Sbjct 487 TCTTGTGG-AGTTGGAGTAG-TAA-A-GATTACGA-ATCATCACCGCCCGAAAGAGGTTT 541
Query 525 CAGGTTTGAAATATATGACTTTAGATCTGATTCATGGAAGGTTCTTGATGACGTCCCTGA 584
||||||||||||| || ||||| ||||||||||||| ||||||||||||| | | |
Sbjct 542 GGGGTTTGAAATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACATTAATCA 601
Query 585 TGAC-CGCTT---C---C-CA-C-CAGTA--AGT--GT--CGTGTCTTTAAAGGGAAACA 628
||| | ||| | | || | | ||| || || ||||||||| |||||||| |
Sbjct 602 CGACTC-CTTGGTCAAGCACAACTCCGTATTAGGAAGTGGCGTGTCTTTGAAGGGAAATA 660
Query 629 CTTACTGGTTTG-GT-TC-TAAT-AA-AAAGGACT---TCTT-ACGTA-GTTTTGATTTT 678
|||||| ||| | || | | | || ||| || | || || || |||| ||||||
Sbjct 661 CTTACTTGTTCGCGTATGATGTTGAAGAAAATTCTAGATTTTTACTTATGTTT-GATTTT 719
Query 679 ACAACAGAGAGATTTAATCATAT-TGGTCTTCCGCCATCTCGA-GATCATGGTTTTATGG 736
|||||||||||||| || | | | || ||||||| || || | ||| |||| ||||
Sbjct 720 ACAACAGAGAGATTGAAACGTCTATGC-CTTCCGC-ATTTCCAAGATGTTGGTCACATGG 777
Query 737 CTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACAA-GAGATT-G-AG-ACATCA 792
||||||||||||| |||||||||| |||||| | ||||| | || | | | ||||||
Sbjct 778 TTCTATCAGTTGTTAGAGAAGAACACCTCTCAATATTACATTG-GACTCGTACTACATCA 836
Query 793 AAGATGGAGATATTTG-TAACCAATAA-AGTTGGTACTGAAGAAGCTGCTTTGTTGTGGA 850
||||||||||||| | |||||||||| | ||| ||||| | || | ||||||||||
Sbjct 837 AAGATGGAGATATG-GATAACCAATAACA-TTGACACTGATG---CTACATTGTTGTGGA 891
Query 851 GCAAATCCTTTATAGTGGATTTACCCATTGGCGGTCATTGT-T-CTGAGGTTTTCGCGAG 908
| | | | | | |||| || | || || ||||| | | || | ||| | ||
Sbjct 892 G-A---C-T-----GC--ACTTACACACTCGCTGTAATTGTGTTC-GAA-TCTTCTCAAG 937
Query 909 TCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTGTAAT-TTA 954
||| |||||| |||||||||||||||| | ||||||||||||| |||
Sbjct 938 TCTATTAATCGACGAGGAGAAGAAAGTCGTCTTGTGTTGTAATGTTA 984
> Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703
Length=1092
Score = 398 bits (215), Expect = 6e-110
Identities = 509/642 (79%), Gaps = 55/642 (9%)
Strand=Plus/Plus
Query 372 GGAAACCAGGTGGATCCAACTCAAAGATGAATGCAG-GAGATACTCTACGTTTGCTCTAG 430
|||| | ||||||||||||| |||| ||| | | | ||||||||||| |||||||||||
Sbjct 309 GGAATCTAGGTGGATCCAACGCAAAAATGGTTAC-GAGAGATACTCTAGGTTTGCTCTAG 367
Query 431 GATACGAAAACAACAAATTTTGTCGTCGTAACTACAAAATCTTGAGGTATTGGGGTTGGT 490
||||||| |||||||||| ||| | ||| ||||||| |||||| || || ||||| |
Sbjct 368 GATACGAGAACAACAAATCTTG-C--AGTAGCTACAAATTCTTGATGTGTT-GGGTTTG- 422
Query 491 TTCACGATCACATACCAGACGACG--G-CGGACG-TTTCAGGTTTGAAATATATGACTTT 546
|| ||||| || || || ||||| | |||| | ||| |||||||||| ||||| |||
Sbjct 423 TT-ACGATGGCAAACTAGGCGACGAAGACGGA-GTTTTGGGGTTTGAAATCTATGAGTTT 480
Query 547 AGATCTGATTCATGGAAGGTTCTTGATGACGTCCCTGATGACCGCTTCCCACCAGTAAGT 606
|| ||||||||||||| |||||||||||||||| || ||| |||| ||| | | || |
Sbjct 481 AGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCTTCCGACTGCTTTCCATCTGCAAAT 540
Query 607 GTCGTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTAATAAA-AAGGACTT-CTTAC 664
| ||||||||| |||||||| ||||| ||| || |||| || ||||| | | |
Sbjct 541 GGCGTGTCTTTGAAGGGAAATGCTTAC-----TGG--CT--TAAAGAA-GACTTAC-T-C 588
Query 665 GTAGTTTTGATTTTACAA-CAGAGAGATTTAATCATATTGGTCTTCCGCCA--TCTCGAG 721
| ||||||||||||||| | |||||||||| | | || ||||||||||| || | ||
Sbjct 589 -T-GTTTTGATTTTACAATTA-AGAGATTTAAACGTGTTTGTCTTCCGCCAGTTC-CAAG 644
Query 722 ATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACA-AGAG 780
| || || ||||||||||||||||||| ||||||||||||||||| ||||||| | |
Sbjct 645 -CCGTGATTGTATGGCTCTATCAGTTGTTAGAGAAGAACAACTCTCATTGTTACATCG-G 702
Query 781 ATT---GAGACATCAAAGATGGAGATATTTGTAACCAATAAAGTTGGTACTGAAGAAGCT 837
||| | ||||| ||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 703 ATTCAACATACATCGAAGATGGAGATATATGTAACCAAGAAAGTTGATACTGAAGAAGCT 762
Query 838 GCTTTGTTGTGGAGCAAATCCTTTATAGTGGA-TTTACCCATTGGCGGTCAT---TG-TT 892
| |||||||||||||||||||| | ||| | |||||||||||| |||||| | ||
Sbjct 763 GATTTGTTGTGGAGCAAATCCTCAACAGT-AAGTTTACCCATTGGAGGTCATAAAGGTTT 821
Query 893 CTGAGGTTTTCGCGAGTCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTGTAAT- 951
| | |||||| ||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 822 C-AATGTTTTCTCGAGTCTATTAATCGACGAGGAGAAGAAAGTGGCCTTGCATTGTAATA 880
Query 952 TTAGATTTCG-AGACCGACGG-G-AACTTGATATTCACTATT 990
| | |||| | ||||| | || | ||| || ||| |||||||
Sbjct 881 TCA-ATTT-GAAGACC-A-GGTGTAACATGTTATACACTATT 918
Score = 224 bits (121), Expect = 1e-57
Identities = 246/304 (81%), Gaps = 18/304 (6%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
||||| ||||||||| ||| || |||||||||||||||| |||||| | ||||||| |
Sbjct 7 ATGTCCGATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCCACATGT 66
Query 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAAC-ACTTTATTCAAAAAAC-GAAGTT 118
|| ||||| |||||||||||||||||| ||||||| | ||| ||| ||| || |||| |
Sbjct 67 TTGCAACGAGTACGATCTACTTGCAAACGATGGAACGA-TTTGTTC-AAAGACGGAAGAT 124
Query 119 TCAGC-CAGAAACACTTTCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAG 177
||| | |||| ||||||| || |||| |||||||||| || | |||||||||||||||
Sbjct 125 TCA-CGGAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTTGATACTCATGTTGAAGGAG 183
Query 178 --TACAGAGTTTGCTCAAT-GAATATCAATCTCAA-TGTTTCTCCTCCATCTGTAGAGTT 233
|| | | |||||||||| | |||||||||| | |||| |||||||||||||||||
Sbjct 184 CTTA-A-ACTTTGCTCAATCG-GCGTCAATCTCAACT-TTTCACCTCCATCTGTAGAGTT 239
Query 234 TCAAGGTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAGT 293
|||||||||||||| | |||||||| | |||| |||||| || |||||| | || | |
Sbjct 240 TCAAGGTACACTTGACCTAAAAGAT--T-CCCACCCTAATTCAGAACAAGTAG-GACAAT 295
Query 294 CGAA 297
||||
Sbjct 296 CGAA 299
> Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1
Length=994
Score = 305 bits (165), Expect = 4e-82
Identities = 392/495 (79%), Gaps = 42/495 (8%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCTTTGGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCT 60
||||| |||||||| |||||||||||||||||||||||||||| | | |||||||||
Sbjct 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60
Query 61 CTGAAACGATTACGATCTACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTC 120
||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| |||
Sbjct 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120
Query 121 AGCC-AGAAACACTTTCAT-ATAGCTCCAAAGGAGTCT-ATGGT-TCTCATGTTGAAGGA 176
| || |||| ||||||| | | |||||||||| ||||| ||| | | | ||| ||| ||
Sbjct 121 A-CCGAGAAGCACTTTCGTGA-AGCTCCAAAGCAGTCTCATGCTCTGTTATG--GAACGA 176
Query 177 --GTACAGAGTTTGCTC-AATGAATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTT 233
||| | ||||| || ||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 177 TCGTAG-G-GTTTG-TCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTT 233
Query 234 TCAAG-GTACACTTGGCATAAAAGATGATTCCCATTCTAATTTAGGACAAGTCGAGATAG 292
| ||| || |||| | || || | || |||| || | ||| | |||
Sbjct 234 T-AAGAGTGTACTTAGTATTAA-G--GA--CCCAG---AACC-----C--GTCTATATA- 276
Query 293 TCGAA-GTTTATCACTGTGATGGTTTGTTGTTATGCGCCACC-AGGGACAATAGACTCGT 350
|| || |||| |||||| || ||||| ||||||||| ||||| | | | |||||||||
Sbjct 277 TCCAATGTTTCTCACTGCGACGGTTTATTGTTATGCACCACCGATG-ATGGTAGACTCGT 335
Query 351 GGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACTC--AAAGATGAATGCAGG 408
||||||||||||||||||||| |||||||||||||| |||| ||| |||| | || |
Sbjct 336 AGTTTGGAATCCGTGTTTGGGGCAAACCAGGTGGATC-AACTTTGAAA-ATGATTACAAG 393
Query 409 AGATACTCTACGTTTGCTCTAGGATACGAAAACAACAAATTTTGTCGTCGTAACTACAAA 468
| ||||| || |||||||||||||||| |||| ||||||| ||| | |||| |||||||
Sbjct 394 ACATACTATAGGTTTGCTCTAGGATACAAAAATAACAAATCTTG-C--CGTAGCTACAAA 450
Query 469 ATCTTGAGGTATTGG 483
||||||||| ||||
Sbjct 451 CTCTTGAGGTTTTGG 465
> Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011
Length=1152
Score = 161 bits (87), Expect = 8e-39
Identities = 183/227 (81%), Gaps = 16/227 (7%)
Strand=Plus/Plus
Query 733 ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTG-TTA--CA-AGAGATTGAG-A 787
|||||||||||||||||||||||| |||||||||||||| | | || || || | || |
Sbjct 757 ATGGCTCTATCAGTTGTTGGAGAAAAACAACTCTCAGTGCTAAGTCAGAGCGA-T-AGTA 814
Query 788 CATCAAAGATGGAGATATTTG-TAACCAAT-AAAGTTGGTACTGA-A--GAAGCTGCTTT 842
|||||||||| || ||| | | |||||||| ||| ||| || ||| | ||| || |||
Sbjct 815 CATCAAAGATTGATATA-TGGATAACCAATGAAA-TTGATAATGATATTAAAGGTGTTTT 872
Query 843 GTTGTGGAGCAAATCCTTTATAGTGGATTTACCCATT-GGCGGTCATTGTTCTGAGGTTT 901
| ||||||||||||||||| ||| ||| ||||| || |||||| || || | | |||
Sbjct 873 GCAGTGGAGCAAATCCTTTACAGTTGATATACCC-TTCGGCGGTTATAATTATTTGTTTT 931
Query 902 TCGCGAGTCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTGT 948
|| |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 932 TCTTGAGTTTTTTAAACGACGAGGAGAAGAAAGTGGCCTTGTGTTGT 978
> Ahg915313 jgi|Araly1|915313|Al_scaffold_0008_64
Length=969
Score = 159 bits (86), Expect = 3e-38
Identities = 293/389 (75%), Gaps = 30/389 (8%)
Strand=Plus/Plus
Query 19 GATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAACGA-TTACGATC 77
|||||| |||| || ||||| | | ||| |||||||||||||||| | | ||||||||
Sbjct 37 GATTTGTTAGAGGAGATACTTTGTCGCGTTCCGGCCACATCTCTGAAGC-AGTTACGATC 95
Query 78 TACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTCAGCCAGAAA-CACTTTC 136
|||||||||||||||||||| |||||||||||| | || |||| ||||| |||||
Sbjct 96 TACTTGCAAACAATGGAACAATTTATTCAAAAATGGGAGATTCATA-AGAAAACACTTGG 154
Query 137 ATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAGTAC-AGAGTTTGCTCAATG 195
||| ||| |||||| ||| | || |||||||||||| |||| | || ||||| || |||
Sbjct 155 ATAAAGCCCCAAAGCAGTTTCTGAATCTCATGTTGAACGAGT-CTAGGGTTTGTTCCATG 213
Query 196 AATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTTTCA-AGGT-ACACTTG-GCATA 252
| | ||| | || ||| | ||||||||||||| || |||| | |||| || ||
Sbjct 214 AGTGTCAGTTTCCATGGAA-T--TCCATCTGTAGAGGC-CACAGGTGA-ACTTAAGC-TA 267
Query 253 AAAGATGATTCCCATTCTAATTTAG--GA-CAAGTCGAGATAG-TCGAAGTTTATCACTG 308
| || | || ||||| ||||| || ||| ||||||| || |||| | ||| ||
Sbjct 268 ATCGAC--T-CCGTTTCTAGTTTAGAAGATCAATTCGAGATTTCTC-AAGTCTCTCATTG 323
Query 309 TGATGGTTTGTTGTTATGCGCC-ACCAGGGACAATAGACTCGTGGTTTGGAATCCGTGTT 367
||| || || ||||||||| || || | ||| |||| ||||||||||||| ||||||
Sbjct 324 TGACGGCTTATTGTTATGCACCGAC--G--ACACTAGAATCGTGGTTTGGAACCCGTGTA 379
Query 368 -TGGGGGAAACCAGGTGGATCCAACTCAA 395
||| |||| ||||||||| ||| |||
Sbjct 380 CTGGTC-AAACTAGGTGGATCGAACCCAA 407
> Ahg929561 jgi|Araly1|929561|scaffold_302018.1
Length=1027
Score = 152 bits (82), Expect = 5e-36
Identities = 135/160 (84%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 18 GGATTTGGTAGAAGAAATACTCTC-AAGGGTTTCGGCCACATCTCTGAAACGATTACGAT 76
||||||||||||||| |||||||| || || | |||| | ||||||||||||||||||||
Sbjct 47 GGATTTGGTAGAAGAGATACTCTCTAA-GGATCCGGCTAGATCTCTGAAACGATTACGAT 105
Query 77 CTACTTGCAAACAATGGAACACTTTATTCAAAAAACGA-AGTTTCAGCCA-GAAACACTT 134
||||||||||||| |||||||| |||||||| | | | || |||| ||| ||| ||||
Sbjct 106 CTACTTGCAAACAGTGGAACACATTATTCAATGATC-ATAGATTCA-CCAAGAAGCACTA 163
Query 135 TCATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAG 174
| ||| ||| |||||||||| | | |||||||||||||||
Sbjct 164 TGATAAAGCACCAAAGGAGTTTCTAGTTCTCATGTTGAAG 203
> Ahg930677 jgi|Araly1|930677|scaffold_303134.1
Length=1195
Score = 117 bits (63), Expect = 2e-25
Identities = 155/197 (79%), Gaps = 16/197 (8%)
Strand=Plus/Plus
Query 18 GGATTTGGTAGAAGAAATACTCT-CAAGGGTTTCGGCCACATCTCTGAAACGATTACGAT 76
||||||| |||| || ||||||| | | ||| |||| ||||||||||||||||||||||
Sbjct 46 GGATTTGTTAGAGGAGATACTCTGC-CGCGTTCCGGCAACATCTCTGAAACGATTACGAT 104
Query 77 CTACTTGCAAACAATGGAACACTTTATTCAAAAAACGA-A-GT--TTCAGCCAGAAA-CA 131
|||||||||||| ||||||| |||| | ||||||||| | | |||| | ||||| ||
Sbjct 105 CTACTTGCAAACGATGGAAC-CTTT-T--AAAAAACGATAAGAGATTCA-CAAGAAAACA 159
Query 132 CTTTCATATAGCTCCAA-AGGAGTCTATGGTTCTCATGTTGAAGGAGTACAGAGTTTGCT 190
||| || | ||| |||| | | ||| || ||||||||| ||| |||| | |||| ||
Sbjct 160 CTTCCACAAAGCCCCAAGACAA-TCTCTGATTCTCATGTGGAATGAGTTTGG-GTTTTCT 217
Query 191 -CAATGAATATCAATCT 206
| ||||| ||||||||
Sbjct 218 TCGATGAACATCAATCT 234
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 113 bits (61), Expect = 2e-24
Identities = 204/268 (76%), Gaps = 29/268 (11%)
Strand=Plus/Plus
Query 610 GTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTA-AT-A--A-A-AAGGACTTCTTA 663
|||||||| |||||||| ||||||||||||| || || || | | | || | ||||||
Sbjct 308 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTT-TAGATGATGACACAA-G-TTTCTTA 364
Query 664 CGT-AGTTTTGATTTTACAACAGAGAGATTTAATCATATTGGTCTTCCGC-CATCTCGAG 721
| | |||||||||||||||||||||||||||| | | || |||||| | || || |||
Sbjct 365 C-TCGGTTTTGATTTTACAACAGAGAGATTTAACCGTTTTTCTCTTCC-CTCAACT-GAG 421
Query 722 A-TCATGGTTTT-ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACAAGA 779
| | ||| | | |||| | |||| ||| || |||||||| |||||||| ||| ||| ||
Sbjct 422 AATT-TGGATATGATGGTTTTATCGGTTTTTAGAGAAGAAAAACTCTCAATGTCACATGA 480
Query 780 GA--TTGAG-ACATCAAAGATGGAGATATTTGTA-ACC-AATA-AAGTTGGTACTGAAGA 833
| || | |||||||||||||| |||||| | ||| |||| || ||| || |||||
Sbjct 481 AAAATTTTGTACATCAAAGATGGA--TATTTGGATACCCAATAGAA-TTGATAGTGAAGC 537
Query 834 AGCTGCTTTGTTGTGGAGCAAATCCTTT 861
|| ||| || |||| |||||||||
Sbjct 538 CGC--CTT-GTCCTGGAAAAAATCCTTT 562
Score = 63.9 bits (34), Expect = 2e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1092 TCCATTTATTTACAATTATGTTCCAAGTTTGGTTCAAATC 1131
||||| ||||| ||||||||||||||||||||||||||||
Sbjct 757 TCCATATATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 796
> Ahg930817 jgi|Araly1|930817|scaffold_303274.1
Length=1060
Score = 108 bits (58), Expect = 1e-22
Identities = 212/281 (75%), Gaps = 32/281 (11%)
Strand=Plus/Plus
Query 610 GTGTCTTTAAAGGGAAACACTTACT-GGTTTGGTTCTAATAAAAAGGACT-TCTTACG-T 666
|||||||| |||||||| || || | |||| ||| ||| |||| | | |||| |
Sbjct 546 GTGTCTTTTAAGGGAAATACATATTGGGTTACTTTC-AAT-GAAAGAAGTATCTT-GGCC 602
Query 667 AGTTTTGATTTTACAACAGAGAGATTTAATCATAT-TGGTCTTCCGCCA-TCTCGAGA-T 723
||||||||||||||||||||||||||||| | | | | |||||||||| | | |||| |
Sbjct 603 AGTTTTGATTTTACAACAGAGAGATTTAAACGTGTGTA-TCTTCCGCCAAT-T-GAGAAT 659
Query 724 CATGGTTTT-ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACA-AGAGA 781
||| || | | ||||||| ||||| |||||||| |||||||||||||| | | |||
Sbjct 660 T-TGGATTGGAAGATTCTATCAATTGTTAGAGAAGAAGAACTCTCAGTGTTA-ATACAGA 717
Query 782 TTGAG-A--CATCAAAGATGGAGATATTTG-TAACCAATAA-AGTTGGTACTGAAGA-AG 835
||| | |||||||||||||||| || | | ||||||| | ||| ||||||| |
Sbjct 718 AAGAGTATACATCAAAGATGGAGAT-TTGGGTGGCCAATAATA-TTGAAACTGAAGCCA- 774
Query 836 CTGCTTTGTTGTGGA-GCAAATCCTTTA-TAGTGGATTTAC 874
| ||| || |||| | |||||||||| | |||||| |||
Sbjct 775 C--CTT-GTCATGGAAG-AAATCCTTTACT-GTGGATATAC 810
> Ahg318596 jgi|Araly1|318596|fgenesh1_pm.C_scaffold_3001612
Length=1119
Score = 102 bits (55), Expect = 5e-21
Identities = 81/93 (87%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 18 GGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAACGATTACGATC 77
|||||||||||| || ||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 24 GGATTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCCACATCTCTGAAACGATTACGATC 83
Query 78 TACTTGCAAACA-ATGGAAC-ACTTTATTCAAA 108
||||||||| | ||||||| | ||||||||||
Sbjct 84 CACTTGCAAA-AGATGGAACCA-TTTATTCAAA 114
> Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611
Length=1002
Score = 100 bits (54), Expect = 2e-20
Identities = 78/90 (87%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 18 GGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAACGATTACGATC 77
||||||| |||| || ||||||| | ||| |||| |||||||||||||||||||||||
Sbjct 21 GGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATC 80
Query 78 TACTTGCAAACAATGGAACACTTTATTCAA 107
||||||||| | |||||||| |||||||||
Sbjct 81 TACTTGCAAGCGATGGAACAGTTTATTCAA 110
> Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511
Length=708
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1104 CAATTATGTTCCAAGTTTGGTTCAAATC 1131
||||||||||||||||||||||||||||
Sbjct 675 CAATTATGTTCCAAGTTTGGTTCAAATC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5