BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22360.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342380 jgi|Araly1|342380|fgenesh1_pg.C_scaffold_3002143 1520 0.0
Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530 1123 0.0
> Ahg342380 jgi|Araly1|342380|fgenesh1_pg.C_scaffold_3002143
Length=975
Score = 1520 bits (823), Expect = 0.0
Identities = 928/979 (95%), Gaps = 5/979 (1%)
Strand=Plus/Plus
Query 1 ATGATGATGAGTCGTCGCTATGGAGCCAA-GCTAATGGAAACTGCTGTGACTCACAGCCA 59
|||||||||| |||||| ||||||||| || ||||| |||||||||| ||||||||||
Sbjct 1 ATGATGATGA---GTCGCTGTGGAGCCAAGGC-AATGGCAACTGCTGTGTCTCACAGCCA 56
Query 60 TCTTTTGAATCCTAGGGTTCCTCTCGTGACGGAAAATATTAGGGTTCCGGCGATGGGAGT 119
||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 57 TCTTTTGAACCCTAGGGTTCCTCTCGTGGCGGAAAATGTTAGGGTTCCGATGATGGGAGT 116
Query 120 CGTGAGAGTTTTCAGCAAGATGACATTTGAGAAGAAGAAAACTACGGAGGAGAAAGGATC 179
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 117 CGTGAGAGATTTCAGCAAGATGACATTTGAGAAGAAGAAAACGACGGAGGAGAAAGAATC 176
Query 180 TAGCGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 177 TAACGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGG 236
Query 240 AGTGAAGCCGATGAAGATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAG 299
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 237 TGTGAAGCCGATGAAGATCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCG 296
Query 300 GCCATGGGAGACATATAAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATC 359
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 297 GCCATGGGAGACTTATAAATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATC 356
Query 360 GACTTTACCGGACAAACTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCT 419
||| ||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 357 GACATTATCGGACAAATTAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGT 416
Query 420 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 476
Query 480 AGGAATGGTTGGAGGGATGTTAGTACACTGCAAATCGCTTCGACGGTTTGAACAAAGCGG 539
|||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||
Sbjct 477 AGGAATGGTTGGAGGGATGTTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGG 536
Query 540 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 596
Query 600 CATGGAAGTCGCGAAACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCAT 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 CATGGAAGTCGCGAAACCCAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCGT 656
Query 660 TTTCTTCAATGCTTATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGT 719
||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 657 TTTTTTCAACGCTTATTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGT 716
Query 720 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 776
Query 780 TGGTAACATCGAAAATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGC 839
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 CGGTAACATCGAAAACGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGC 836
Query 840 TGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 896
Query 900 TGTTAACCACTATGCATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGC 959
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 897 CGTTAACCATTATGCATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGC 956
Query 960 TCCCATTGGATATCATTGA 978
|||||| ||||||||||||
Sbjct 957 TCCCATCGGATATCATTGA 975
> Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530
Length=993
Score = 1123 bits (608), Expect = 0.0
Identities = 809/905 (89%), Gaps = 18/905 (2%)
Strand=Plus/Plus
Query 89 CGGAAAATATTAGGGTTCCGGCGATGGGAGTCGTGAGAGTTTTCAGCAAGATGACATTTG 148
|||||||| |||||| |||||||||||||| | |||||| |||||||||||||| |||||
Sbjct 92 CGGAAAATTTTAGGGCTCCGGCGATGGGAGGCTTGAGAGATTTCAGCAAGATGATATTTG 151
Query 149 AGAAGAAGAAAAC--T--ACGGAGGAGAAAGGATCTAGCGGTGGC---AAGGC---TGAT 198
| ||||||||||| | | |||||||||| ||||| | | |||| ||||| ||||
Sbjct 152 AAAAGAAGAAAACGTTGGA-GGAGGAGAAAAGATCTGGTGATGGCGAGAAGGCTAATGAT 210
Query 199 CAA-G--GTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGGAGTGAAGCCGATGAAG 255
||| | |||||||| |||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 211 CAAGGTAGTAACAAATGGGAACAATTAATCGTTAGTTATTGGGGCGTGAAGCCGATGAAA 270
Query 256 ATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAGGCCATGGGAGACATAT 315
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||
Sbjct 271 ATCACCAAAGAAGATGGAACTGAATGGAAATGGACTTGTTTTCGGCCATGGGAGACGTAT 330
Query 316 AAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATCGACTTTACCGGACAAA 375
||| | ||| |||| ||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 331 AAAGCTGATTTGACGATAGATTTGAAGAAGCACCATGTTCCTTCCACTTTACCGGACAAA 390
Query 376 CTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGCGG 435
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 391 TTAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTCTTCTTCCAGAGGCGG 450
Query 436 TACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGG 495
|| |||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 451 TATGGATGCCGAGCGATGATGTTAGAAACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGG 510
Query 496 ATG-TTAGTACACTGCAAATCGCTTCGACGGTTT-GAACAAAGCGGTGGTTGGATCAAAG 553
||| ||| | |||| |||||||||||| | |||| |||||||| || |||||||| ||||
Sbjct 511 ATGCTTA-TGCACTTCAAATCGCTTCGGC-GTTTCGAACAAAGTGGGGGTTGGATTAAAG 568
Query 554 CCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGA 613
|||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 569 CCCTTCTTGAGGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTCGCGA 628
Query 614 AACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCATTTTCTTCAATGCTT 673
|||| || ||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 629 AACCCAAATGGTACGAACGAGCTCTTGTGATCGCCGTTCAAGGCGTTTTCTTCAACGCTT 688
Query 674 ATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGG 733
|||| || |||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 689 ATTTACTCGGATACTTAATCTCCCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGG 748
Query 734 AAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAATGGTAACATCGAAA 793
|||||||||| || |||||||| || ||||| |||||||| |||||||||||||| ||||
Sbjct 749 AAGAAGCAATACATTCTTACACCGAATTTCTCAAAGAACTTGATAATGGTAACATTGAAA 808
Query 794 ATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGCTGATGCGACGCTTC 853
| || ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 809 ACGTTCCTGCACCGGCTATTGCTATTGATTACTGGAGGCTTGAAGCTGACGCAACGCTTC 868
Query 854 GTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGATGTTAACCACTATG 913
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 869 GTGATGTCGTCATGGTGGTTCGTGCTGATGAGGCCCATCACCGTGATGTTAACCACTATG 928
Query 914 CATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGCTCCCATTGGATATC 973
||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 929 CATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCCATAGGATATC 988
Query 974 ATTGA 978
|||||
Sbjct 989 ATTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5