BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22380.2
Length=5487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479750 jgi|Araly1|479750|fgenesh2_kg.3__2451__AT3G22380.1 7387 0.0
> Ahg479750 jgi|Araly1|479750|fgenesh2_kg.3__2451__AT3G22380.1
Length=5418
Score = 7387 bits (4000), Expect = 0.0
Identities = 4662/4972 (94%), Gaps = 84/4972 (2%)
Strand=Plus/Plus
Query 1 GGAGGGCCAAGATTTTGTCACGCTGGTATATAGCGT-ATCGTGACCGTTGGATGTATTCA 59
||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||||
Sbjct 1 GGAGGGCCAAGATTTTGTCTTGCTGGTATATAG-TTGATCATGACCGTTGGATGAATTCA 59
Query 60 CACCGACGGTGAAGATTGAGAAAATGTTTTACGGCAGGAGATATGAGCCGTGGATTTATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACCGACGGTGAAGATTGAGAAAATGTTTTACGGCAGGAGATATGAGCCGTGGATTTATT 119
Query 120 CGCTACTCTGCTTTTATGAGGAGCACAAATAAAGGAGATAATGGGAAGCAAGTagagaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCTACTCTGCTTTTATGAGGAGCACAAATAAAGGAGATAATGGGAAGCAAGTAGAGAGA 179
Query 180 tagaggagagagagtttgataaagagagagaaaaaggggttgcga-tttgggagaagaga 238
||||||| | |||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 TAGAGGA-A-AGAG--AGATAAAGAGAGAG-AAAAGGGGTTGCGATTTTGGGAGAAGAGA 234
Query 239 aatagagaggagaagcattagagaagaagaagaagaagatggatagaaatagagaagcta 298
|| |||| | ||||||||| || |||||| |||||||||||||||||||||||
Sbjct 235 AA-AGAG-GAAGAAGCATT--------AG-AGAAGACGATGGATAGAAATAGAGAAGCTA 283
Query 299 gaagagTACCTATGGCGGCTGCCGGAAATGGTCTTTCCCGGCGGAGACATAGAGCCGGAA 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 284 GAAGAGTACCTATGGCGGCTGCCGGAAATGGTCTTTCACGGCGGAGACATAGAGCCGGAA 343
Query 359 GTTTCAGAGATTCACCAGAGGAGGAAGGTCCGGTGGAGTTACCGGAGGCGGCGAGGTTGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GTTTCAGAGATTCACCAGAGGAGGAAGGTCCGGTGGAGTTACCGGAGGCGGCGAGGTTGA 403
Query 419 GAGATCGAGGAGGGAGTAATAAGAAGGATCGAGATCGGGAACGTGATagagacagagaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GAGATCGAGGAGGGAGTAATAAGAAGGATCGAGATCGGGAACGTGATAGAGACAGAGAGA 463
Query 479 gggaaagagaaagagatagggagagagaTCGGTTAAATAGCCGGAGTAAACGGCGGAGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 464 GGGAAAGAGAAAGAGATAGGGAGAGAGATCGGTTAAATAGCCGGAGTAAACGGAGAAGAG 523
Query 539 GAGAACGCTTAATGATGGTTCACGGTAATCTAGACGACGGTGGCGACGATAGCTCGGAAG 598
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 524 GAGAACGATTAATGATGGTTCACGGTAATTTAGACGACGGTGGTGACGATAGCTCTGAAG 583
Query 599 AGAGTGTCAACGACGATGAAGAATATGACGACGGA-G-G-TGTAGGACCACCTTCTTCGT 655
||||||| ||||||||||||||||||||||||||| | | |||||||||||| |||||||
Sbjct 584 AGAGTGTTAACGACGATGAAGAATATGACGACGGAGGAGCTGTAGGACCACCGTCTTCGT 643
Query 656 TGAAGATGCTTCCTCCGACGAGCAATAATATCTCAGCTGCATCGTTTTCATCGTCTCTAT 715
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
Sbjct 644 TGAAGATGCTTCCTCCGACGAGTAATAATATCTCCGCCGCATCGTTTTCATCGTCTCTTT 703
Query 716 CAAATCATCACAACGGAGGTAGCGGTAATCTCCATCACCACCATCACAGCCA-CAACAAT 774
|||||||||||||||| |||||||||||||| ||| |||||||||| ||| | | |||
Sbjct 704 CAAATCATCACAACGGTGGTAGCGGTAATCT---TCATCACCATCACAACCATC-ATAAT 759
Query 775 AACCATCAGAGGAAGAATAATTTTCCGCCGACGAAAGTTTTCAGATCGTCTCCTTCTCCG 834
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 760 AACCATCAGAGGAAG---AATTTTCCGCCGACGAAAGTTTTCAGATCGTCTCCTTCTCTG 816
Query 835 GCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCG 894
|||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 817 GCGCCGGTTTCACCTCTAGTCTCGACGTGGAAAGCCGCTGACGAAATGATCGGTGTTTCG 876
Query 895 GTTCCTAGAAAAGCTCGGTCAGCGTGTACGAAGAGACCTCATGAATCATGGGCGTCAAGT 954
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 877 GTTCCTAGAAAAGCTCGGTCAGCTTGTACGAAGAGACCTCATGAATCATGGTCATCAAGT 936
Query 955 ACTACCGGAGGTGGTGTTTTTGCTTCCGGTGAACAAATCCATCGGCAAATATCATCAACG 1014
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 937 ACTACCGGAGGTGGTGTTTTTGCTTCCGGTGAACAAATCCACCGCCAAATATCATCAACG 996
Query 1015 TCTCCAGCTAATAGAGTTAGTCCGGCTTCGATTTTAGCATCTCCGTCTCCTCCTGCTCCT 1074
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||
Sbjct 997 TCTCCAGCTAATAGAGTTAGTCCTGCTTCAATTCTAGCATCTCCGTCTCCTCCAGCTCCT 1056
Query 1075 ACGTCTCCTTCTTCATCAAGCATTTCCGTCAGGAAAAAATTGCCGTCGGGGACGAAACAG 1134
|| ||||||||||||||||||||||| ||| ||||||||||| ||||||| || ||||||
Sbjct 1057 ACATCTCCTTCTTCATCAAGCATTTCAGTCCGGAAAAAATTGTCGTCGGGAACAAAACAG 1116
Query 1135 AAGCCGTTACCGCCGAAGTCATCATCGAGTAAGTTATCATCGCCAGTGGCTGTACAAGAC 1194
||| ||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||
Sbjct 1117 AAGACGTTACCGCCGAAATCATCATCGTGTAAGTTATCATCGTCGGTGGCTGTACAAGAC 1176
Query 1195 GAGATCGAGATCGAGATTGCAGAAGTGTTGTATGGTATGATGAGGATGCC-TT--CCACA 1251
|||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 1177 GAGATCGAGATCGAGATTGCAGAAGTGTTGTACGGTATGATGAGGATGCCTTTAGCTACC 1236
Query 1252 TCAAAACAAGAAGCAGCCGGTAACGATTTGACGGAGGCAGCGAAATCAACTGTAGAAGTC 1311
|||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1237 TCAAAACAAGAATCCGCCGGTAACGATATGACGGAGGCAGCGAAATCAACAGTAGAAGTC 1296
Query 1312 AAATCTCGAGTCTCTTCACCGATCTCAAATCCTCAGACTCTTCCTCAATCATCTATCACA 1371
|||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1297 AAATCTAGAGTATCTTCACCGATCTCAAATCCTCAGACTCTTCCTCAATCCTCCATCACA 1356
Query 1372 CTAGCTGCAAATTCTAGCTCCTCTAATGTTTCAGCCATCGCTCCTAAGAGAAAGAAGCCG 1431
|||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1357 CTAGCTACAAATTCTAGCTCTTCTAATGTTTCAGCCATTGCTCCTAAAAGAAAGAAGCCA 1416
Query 1432 AGACATGTCAAGTACGAAGACGATAACAGTTCACGCGTCACTACAATCAAATCCGAAGCC 1491
||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1417 AGACATGTCAAATACGAAGATGATAACAGTTCTCGCATCACTACAATCAAATCCGAAGCC 1476
Query 1492 GAAGCTCCTTCAAAAAGTCAAGTTCCGTTCAGTAATCAACTAAAGAGCTCAGGATCCGGC 1551
|||||||||||||||| |||||||||||| || |||| |||||||||||||||||||||
Sbjct 1477 GAAGCTCCTTCAAAAAATCAAGTTCCGTTTGGTGATCAGCTAAAGAGCTCAGGATCCGGC 1536
Query 1552 GAAGGAAACAGCTCCGTATTGGATTCTATCATACCACTGACGAGAGAAAGCAACGCTTCG 1611
|||||||||||||| ||||||||||| ||||| |||| |||||||||||| |||||||||
Sbjct 1537 GAAGGAAACAGCTCTGTATTGGATTCGATCATTCCACAGACGAGAGAAAGTAACGCTTCG 1596
Query 1612 TTAGA-T-----TC-G--GAGAAAAAAGAGAACAATCTGTCAAAAGACGAAACAATATTG 1662
||||| | || | ||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1597 TTAGATTCGAGATCAGCTGAGAAAAAAGAGAACAATCTGTCGAAAGATGAAACGATATTG 1656
Query 1663 CCGAAAGTGGAATCTTCTTCAGGATTTAGATCCGATGGTGAAGGAGCTAAATCGAGTTCG 1722
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1657 CCGAAAGTGGAATCTTCTTCAGGATTTAGATCCGATGGTGATGGAGCTAAATTGAGTTCG 1716
Query 1723 CCGGAAAAAGAGAAGTTTGAGATAGATCTGATGGCGCCACCGCCGGTGAGATCGTCGTCG 1782
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1717 CCGGAAAAAGCGAAGTTTGAGATAGATCTGATGGCGCCACCGCCGGTGAGATCATCGTCG 1776
Query 1783 GAGAGAGGCGGAGAGATGATGGAATGTGTGGCGGCAGAAGCTAAACCTAAAGTCACGGAA 1842
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1777 GAGAGAGGCGGAGAGATGATGGAATGTGTGGCAGCAGAAGCTAAACCTAAAGTCACGGAA 1836
Query 1843 GTGGAAACGGAAGCAAAGCCTCTGCTTAAGGAAGATAGAAGTGATCCGGCGATTCATGAT 1902
|||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1837 GTGGAAACGGAAGCAAAGCCTCTGCTCAAGGAAGATAGAGGTGAAGCGGCGATTCATGAT 1896
Query 1903 TCTCAGGAGAAGAAGAGACCTAGAATGGTTGCT-GAAGCTGAACACCATAAGTTTGAGAG 1961
||||||||||||||||||||||||| || || | ||||||||||||||||||| ||||||
Sbjct 1897 TCTCAGGAGAAGAAGAGACCTAGAACGG-TGGTAGAAGCTGAACACCATAAGTATGAGAG 1955
Query 1962 GAATTGTGAACTCAAACTCGACTTGGATAAATCTGATCATGTGGGTTTAGTAAACAAGCA 2021
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1956 GAATTGTGAACTTAAACTCGACTTGGATAAATCTGATCATGTTGGTTTAGTAAACAAGCA 2015
Query 2022 TCATGTTCAGAAACCGCCACCGCAACAGCAACTATCTGTTCCTGATAAAACTGCTCAAGC 2081
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2016 TCATGTTCAGAAACAGCCACCGCAACAACAACTATCTGTTCCTGATAAAACAACTCAAGG 2075
Query 2082 TAGCCATTTGCCTCTGCATATGTCTATGCCTGGCTGGCCTGGGGGCCTTCCTACAATGGG 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 TAGCCATTTGCCTCTGCATATGTCTATGCCTGGCTGGCCTGGGGGCCTTCCTACAATGGG 2135
Query 2142 ATACATGGCACCTACACAAGGAGTTGTGCCTACGGATACCAGTTCCTTATCAGCTGCAGC 2201
||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 2136 ATATATGGCACCTACGCAAGGAGTTGTGCCTACGGATGCCAGTTCCTTATCTGCTGCAGC 2195
Query 2202 AATGCAGCCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACACA 2261
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2196 AATGCAGCCTCCACCGCATTTACTTTTTAATCAACCGAGGCCTAAGCGATGTGCTACACA 2255
Query 2262 CTGCTACATTGCTCGGAATATTCAATCTCATCAGCAATTCACAAAGATGAATCCTTTCTG 2321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2256 CTGCTACATTGCTCGGAATATTCAATCTCATCAGCAGTTCACAAAGATGAATCCTTTCTG 2315
Query 2322 GCCTGCAGCAGCAGGCTCAGCTCCAATGTATGGGACCAAGGCCTGCAATCTCAGTCTTAT 2381
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2316 GCCTGCAGCAGCAGGCTCAGCTCCATTGTATGGGACCAAGGCCTGCAATCTCAGTCTCAT 2375
Query 2382 GCCTCCCACAGAACTTCAGGGGAGTGTTTTGGGAAGAAGTTCCAACCCTGTTCAAGATAA 2441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2376 GCCTCCCACAGAACTTCAGGGGAGTGTTTTGGGAAGAAGTTCCAACCCTGTTCAAGATAA 2435
Query 2442 GAATTCTCAATCTACGTCCAAAAGCTCAGAGACAGCTCAAAGAAATCAATTAATGCTTCA 2501
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||
Sbjct 2436 GAATTCTCAATCTACGTCCAAAAGCTCAGATACAGCTCAGAGAAATCAATTATTGCTCCA 2495
Query 2502 ACAAGCTTTGCCTCCAGGAGCAGCTAATAGCATCTTGCATGGTCCGACATTCATATTCCC 2561
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 2496 ACAAGCTTTGCCTCCAGGAGCTGCTAATAACATCTTGCATGGTCCTACATTCATATTCCC 2555
Query 2562 CTTGGGCCAACAGCCTCACGCTGCCGCTACAATAGCTGCCGCATCTGTCAGACCTCCTAA 2621
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 2556 CTTGGGCCAACAGCCTCATACAGCCGCTACAATAGCTGCTGCATCTGTCAGACCTCCTAA 2615
Query 2622 TAGTGGCATCACATCTTCTGGACCAACAGCTACTTCTACCTCCATGAATGGTTCTGCATC 2681
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2616 TAGTGGCATCACATCTTCTGGACCAACAGCTACTTCTAACTCCATGAATGGTTCTGTATC 2675
Query 2682 AGCTACTCCAGCTGGTGCCCCAACAATGAGCTTCAGTTATCCTGCCATGCCGGGAAATGA 2741
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2676 CGCTACTCCAGCCGGTGCCCCAACAATGAGCTTCAGTTACCCGGCCATGCCGGGAAATGA 2735
Query 2742 AACGCAGTACCTGGCCATTTTGCAGAATAACGGCTATCCATTTCCAGTTCCAGCACATGT 2801
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2736 AACGCAGTACCTGGCCATTTTACAGAATAACGGCTATCCATTTCCAGTTCCAGCACATGT 2795
Query 2802 TGGTGCACAACCTGCTTATAGAGGTGCTCCTGGGCAGCCGATGCCATTTTTTAATGGTTC 2861
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2796 TGGGGCACCACCTGCTTATAGAGGAGCTCCTGGGCAGCCGATGCCATTTTTTAATGGTTC 2855
Query 2862 ATTCTATTCCTCCCAAATGATCCAGCCTCCACATCATCAGCCACAAAAGCAGCATCAGCA 2921
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2856 ATTCTATTCCTCCCAAATGATCCAGCCTCCACATCATCAGCCACAGAAGCAGCAACAGCA 2915
Query 2922 GCAGCTAACTGGTCAAATGCTCCAGAGCCATGCTCCTAACAACCAGAATGGGAGTGCTTC 2981
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2916 GCAGCAAACTGGTCAAATGCTGCAGAGCCATGCTCCTAACAACCAGAATGGGAGTGTTTC 2975
Query 2982 CACTGGTTCCTCAGCAGCTCAAAAGCATCTGCAGAACCAACAGTTGAGGCCACCGATTAA 3041
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2976 CACTGGTTCCTCAGCAGCACAAAAGCATCTGCAGAACCAACAGTTGAGGCCACCGATTAA 3035
Query 3042 TCATGGGAACTCTCAAGGATTTCCAACTCATAAAGTGCAATCGCAGCCTTTGAATTTTCA 3101
|||||||||||| ||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct 3036 TCATGGGAACTCCCAAGGATTTCCAACTCATAAAGTCCAGTCTCAGCCTTTGAGTTTTCA 3095
Query 3102 GCAGAGGCAGCAACCCAGAGAAAATGCTACTCAACATAGTGAGACTGTAGGGGAAGATAG 3161
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3096 GCAGAGGCAGCAACCCAGAGAAAATGCAACTCAACATAGTGAGACTGTAGGGGAAGATAG 3155
Query 3162 CCCATCAACTGCTGATAGCCGGGGTTCTCGTTCCAATGTTGCCTATGGCCAGAACTATGG 3221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3156 CCCATCAACTGCTGATAGCCGGGGTTCTCGTTCCAATGTTGCCTATGGCCAGAACTATGG 3215
Query 3222 TATGCAAATGCAACCAACTAACTTGGGTTTGATGAGTTCCCCTGCCCCTGGTGGTGGGGT 3281
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 3216 TATGCAAATGCAACCAACCAACTTGGGTTTGATGAGTTCACCAGCCCCTGGTGGTGGAGT 3275
Query 3282 GGTTGGATCTTCGAGCAGTCATGGTGAAAAGAAATCACAGCAGCAGGTTTCAAAGGCTGG 3341
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3276 GGTTGGATCTTCGAGCAGTCATGGTGAAAAGAAACCACAGCAGCAGGTTTCAAAGGCTGG 3335
Query 3342 TGTAGAATCCTTCCAGTCACCGGGTTATGCTATGACTTTTGCGACGTTCAATGGGGCTAA 3401
| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 3336 GGCAGAATCCTTCCAGTCACAGGGTTATGCTATGACTTTTGCGACATTCAATGGGGCTAA 3395
Query 3402 CACTGCTCCTACCCTAAACATGTCATCAATTGCTCAGAATCACGCTATGTTCCACAGCAT 3461
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3396 CACTGCTCCTGCCCTAAACATGTCATCAATTGCTCAGAATCACGCTATGTTCCACAGCAT 3455
Query 3462 GCCCGAAGCAGCAAGGCAAGGTTATCAGATGATGGC--T-GCTCAAGCAGCTCAACAAAA 3518
|||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 3456 GCCCGAAGCAGCGAGGCAAGGTTATCAGATGATGGCAGTTGCTCAAGCAGCTCAACAAAA 3515
Query 3519 AATGAACTACGGTGCTTCAC-TAGAAGATGGAAAATCTGGGTCTATTGGTGGTGCTGCTA 3577
|||||||||| ||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct 3516 AATGAACTACAGTGCTTCACAT-GAAGATGGAAAATCCGGGTCTATTGGTG---CTGCTA 3571
Query 3578 CTGCTAATAATACCCCTGAGGAACAAAGGAAGTCAGGAGGAGGGGCAATAGGGAAAACGA 3637
||||||| | |||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 3572 CTGCTAACA---CCCCAGAGGAACAAAGGAAGTCAGGAGGAGGAACAACAGGGAAAACGA 3628
Query 3638 GTGGTGGGAATGGTGGGCAGTCTATTGCTTTCTCTAACAAACAGGATTTAGCTGATGCAT 3697
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3629 GTGGTGGGAATGGTGGGCAGTCTATTGCTTTCTCTAACAAACACGATTTAGCTGATGCAT 3688
Query 3698 CTGTTTCTGCTGTCACGAGTGGTAGCATCGTTGATAGCTCATCCCGTTTACTCAACCTTG 3757
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3689 CTGTTTCTGCTGTCACGAGTGGTAGCATCGTTGATAGCTCATCCCGTTTGCTCAACCTTG 3748
Query 3758 GTTCTGCTCTGCCACAGAGTTCGGGTTCTTTACCCACGTCTCATCATCA--A-CAACTAC 3814
||||||||||||||||||||||||||||| | ||| ||||||||||||| | |||||||
Sbjct 3749 GTTCTGCTCTGCCACAGAGTTCGGGTTCTATGCCCCCGTCTCATCATCATCAGCAACTAC 3808
Query 3815 TACAACAACAGCAGCA--A-CAGCA------TATGCAACGGAGTCAATCGCAGCAACCTT 3865
|||| ||||||||||| | ||||| |||||||||||||||||| ||||||||||
Sbjct 3809 TACAGCAACAGCAGCAGCAACAGCAGCAGCATATGCAACGGAGTCAATCACAGCAACCTT 3868
Query 3866 ATACCACCATGTACCTCCAGAAGCAGCAACGGTATGCAACTTCAGTGGCTGCTTCTGCTG 3925
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3869 ATACCACCATGTATCTCCAGAAGCAGCAACGGTATGCAACTTCAGTGGCTGCTTCTGCTG 3928
Query 3926 CCAGAACCAAAGGGCCCGTGGTGAGTAACGGGAGTGGTTTCCCTGATCACAATATGACCA 3985
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 3929 CTAGAACCAAAGGGCCCGTGGCGAGTAACGGGAGTGGTTTCCCTGATCACAATATCATCA 3988
Query 3986 CATCACCTGCGGGAACCACCAAGTTTGCAAATGCTAATTCAGGGTTCCCTCAAAACCTTG 4045
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3989 CATCACCTGCGGCAACCACCAAGTTTGCAAATGCTAATGCTGGGTTCCCTCAAAACCTTG 4048
Query 4046 TCCAGTCGAGTAGCAATCAGGTTCAGTCTCAGCAGTGGAAAAACAATTCACCCAGGACAA 4105
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4049 TCCAGTCGAGCAGCAATCAGGTTCAGTCTCCTCAGTGGAAAAACAATTCACCCAGGACAA 4108
Query 4106 CAAATACTACCCAAGCTCAGTCTCCTTCGATGTTGTCGCCATCAACATCAGTTGCTGCTG 4165
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 4109 CAAATACTACCCAAGCTCAGTCTCCTTCGATACTATCGCCATCATCATCAGTTGCTGCTG 4168
Query 4166 CATCTTCGCTAAGAAACATCCCGCATAAACAGCAAAGCCGTCCCCAGCAATCGCAGATAT 4225
|||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 4169 CATCGTCGCTAAGAAATGTCTCGCATAAACAGCAAAGCCGTCCCCAGCAATCGCAGATAT 4228
Query 4226 CTTTTGCAGCAAACTCAAAACCAATGACTTCTGGTTCACCAATGCAGCAGGTACAAGGAG 4285
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 4229 CTTTTGCAGCAAACTCGAAACCAATGGCTTCTGGTTCACCAATGCAGCAGGTGCAAGGAG 4288
Query 4286 GAACCAACCACCAGGCTCCGTCTCCACCAATGTTAGTTGGGTCGCCTTCGACGTCGTCTG 4345
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 4289 GAACCAACCACCAGGCTCCGTCTCCACCAATGTTAGTTGGGTCGCCTTCGACGTCTTCCG 4348
Query 4346 TCTCCAAAAATGCCAGCGGAAGCCCAAGAACAACTGCTTCTGCTTCCTCGGCGGCAAACA 4405
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 4349 TCTCCAAAAACGCCAGCGGAAGCCCAAGAACAACTGCTTCCGCTTCCTCGGCAGCTAACA 4408
Query 4406 AAGG-TGGACAAGCTTCCACAACTACTCACTCAGCATCTCAGCCGTCCAAGAACTTACAG 4464
| || ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 4409 A-GGCTGGACAAGCTTCCTCTACTACTCACTCATCATCTCAGCCGTCCAAGAACTTACAG 4467
Query 4465 CCTGCATCTGCGGCGTCATCTGCTGGTGGAAGGAATAATGGTCCTTCTGTTCTCGGAAAC 4524
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4468 TCTGCATCTGTGGCGTCATCTGCTGGTGGAAGGAACAATGGTCCTTCTGTTCTCGGAAAC 4527
Query 4525 CCGACCACGAGCTCTGGATCCAAGTCGCAACAACAGCAGCAGTTGCCAAAGCATGGGCTG 4584
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 4528 CCGACCACGAGCTCTGGATCCAAGTCCCAACAACAGCATCAGTTGCCAAAGCATGGGATG 4587
Query 4585 CAGCCGCAAGCACAGCTATTCTTCTCTAATCCTTATATGCAAGCTCAACATCAACATCAA 4644
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4588 CAGCCGCAAGCACAGCTTTTCTTCTCTAATCCTTACATGCAAGCTCAACATCAACATCAA 4647
Query 4645 CAGCAACAGATCACCATATCTCCTTCTGGTGGGTATTACATCCAAAGACACCAGCAACAG 4704
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4648 CAGCAACAGATCACTATATCTCCTTCTGGTGGGTATTACATCCAAAGACATCAGCAACAG 4707
Query 4705 TCAGGTTCAGCACCTGCTG-T-T--CCA---GTC----A--C--GGGAGCTGTCACCGCC 4749
||||||||||||||||||| | | ||| ||| | | |||||| |||| ||||
Sbjct 4708 TCAGGTTCAGCACCTGCTGCTGTAGCCACATGTCCTCCAGTCACGGGAGCCGTCAGCGCC 4767
Query 4750 ACTTCAGATCCAGCGAAAGCCATAGCGGCTGCATCTGCAGCGAATAACATGAAAGGAGGT 4809
||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 4768 ACTTCAGATCCAGCGAAAGCCATAGCGGCAGCAGCAGCAGCAAATAACATGAAAGGAGGA 4827
Query 4810 GGTGGTATGGGTAAAACTCAACAACATCAGCTTGGGCCTCCAGGGTTCACTAATGTTCAC 4869
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 4828 AGTGGTATGGGTAAAACTCAACAACATCAACTTGGGCCTCCAGGGTTCACGAATGTTCAC 4887
Query 4870 GCTGTTTCCTCTGCGGTTCAGGTCAAACCCGTGGATCAGAAGCAACAGGCGG 4921
|| ||| |||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 4888 GCGGTTCCCTCTGCGGTTCAGGTTAAACCTGTGGATCAGAAGCAACAAGCGG 4939
Score = 342 bits (185), Expect = 1e-92
Identities = 328/389 (84%), Gaps = 41/389 (11%)
Strand=Plus/Plus
Query 4921 GCTTGTGCTGGCGAGACGAAATGACTTTAAAAGAGTCTGATGAAG-AAAGAAGCAGACGG 4979
||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 5017 GCTTGTGCTGGCGAGACGAAAGGACTTT-AAAGAGTCTGATGAAGAAAAGATGCAGACGG 5075
Query 4980 AACAGAACAACTaaaaaaaGGGATGACAAtttttttCGGAGTTGGGGGTGCTTTTTAAAA 5039
||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 5076 AACAGAACACCTTTAAAAAGGGATGACAATTTTTTT-GGAGTTGGGGGTGC-TTTTAAAA 5133
Query 5040 GCATTGTGTACAA-TTAGTGTTTATATTATTCTGACAGGAACCTACGGTGTCAATTCCaa 5098
||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 5134 GCATTGTGTACAATTTAGTGTTTATA-TATTCTGACAGGAGCCTACGGTTTCAATTCCAA 5192
Query 5099 aa-ctaaaacccaaaaaaaagaaaaggaagaagcaaaaaCCTCTTAGAAGTTCTCTAATT 5157
|| | |||| ||||| || ||||||||||||| |||| | ||| || ||
Sbjct 5193 AACCCAAAA---AAAAAGAA-AAAAGGAAGAAGC-AAAA--T-TTA-AA-------AA-- 5234
Query 5158 TAAAAAATTTATTCATTTTTCTTGGGGAGGTTTGAGTT-TTT-GTTTGGTGGTGATGTTA 5215
| |||||||||| |||||||||||||||||||| ||| | | |||| ||||||||
Sbjct 5235 T------TTTATTCATTCTTCTTGGGGAGGTTTGAGTTGTTTTGGT-GGTGATGATGTTA 5287
Query 5216 ---GGTAGGGAA-CCAAAAGAAAATGGGAGAAGTAAAGAGTCGTTAGACACACAGCAATA 5271
|||||| || ||||||||||||||||||||||||||||||| || |||| |||| |
Sbjct 5288 TTAGGTAGG-AATCCAAAAGAAAATGGGAGAAGTAAAGAGTCGTAAGGCACA--GCAAGA 5344
Query 5272 GCGAGCGAACGTACGTTCATATGCTGGCC 5300
|| | |||| ||||||||||| | |||||
Sbjct 5345 GCCAACGAATGTACGTTCATAAGTTGGCC 5373
Score = 78.7 bits (42), Expect = 4e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 5342 CAGTATGATGAATTTATGATTCGTTCTATTTTGTGTTTAAGTTTT 5386
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5374 CAGTATGATGAATTTATGATTCGTTCTATTTTGTGTTTATGTTTT 5418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 207794348580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5