BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22400.1
Length=2977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479752 jgi|Araly1|479752|fgenesh2_kg.3__2453__AT3G22400.1 2333 0.0
> Ahg479752 jgi|Araly1|479752|fgenesh2_kg.3__2453__AT3G22400.1
Length=2715
Score = 2333 bits (1263), Expect = 0.0
Identities = 1444/1534 (94%), Gaps = 2/1534 (0%)
Strand=Plus/Plus
Query 1267 AGATCGGCTTGGAGGACTGACGAAGAGTTTGCTCGAGAAATGCTGGCCGGTCTTAATCCG 1326
||||||||||||||||| ||||||||||||||| | ||||||||||| || || |||||
Sbjct 1181 AGATCGGCTTGGAGGACCGACGAAGAGTTTGCTAGGGAAATGCTGGCTGGACTCAATCCA 1240
Query 1327 GTGGTGATTAGCCGTCTTCAGGAATTTCCACCAAAGAGCTGTCTGGACTCTGCAAAGTAT 1386
||||| ||||| ||||| ||||||||||| || |||||| ||| |||||||||||||||
Sbjct 1241 GTGGTCATTAGTCGTCTCCAGGAATTTCCGCCGAAGAGCAATCTAGACTCTGCAAAGTAT 1300
Query 1387 GGAAACCAACACTCTTCCATACGA-ACAGAGCACATAGAATCAAACATGAACGGCCTCAA 1445
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1301 GGAAACCAACACTCTTCCATACGAGA-AGAGCACATAGAACCAAACATGAACGGCCTCAA 1359
Query 1446 TGTCCAAGAAGCTTTGGAACAGAATAAGCTATACATATTGGATCATCACGACGCATTGAT 1505
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1360 TGTCCAAGAAGCTTTGGAACAGAATAAGCTATACATATTGGATCACCACGACGCATTGAT 1419
Query 1506 GCCTTACCTGACACGGATAAACTCAACAAACACTAAAACCTATGCGACCCGAACCCTGCT 1565
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1420 GCCTTACCTGACGCGGATAAACTCAACAAACACTAAAACCTATGCGACCCGAACCCTTCT 1479
Query 1566 GTTGCTTCAAGCAGACGGAACACTGAAGCCTCTCGCCATAGAGCTGAGTCTTCCACACGC 1625
||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1480 GTTGCTTCAAGAAGACGGAACTTTGAAGCCTCTCGCCATAGAGTTGAGTCTTCCACACGC 1539
Query 1626 ACAAGGCGAATCATATGGATCGGTCAGCAAAGTTTTCACACCAGCAGAGAAAGGTGTCGA 1685
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1540 ACAAGGCGAATCACATGGATCGGTGAGCAAAGTTTTCACACCAGCAGAGAAAGGCGTAGA 1599
Query 1686 GGGATCGGTTTGGCAACTTGCTAAGGCTTATGCTGCGGTCAATGACTCTGGTTATCATCA 1745
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1600 GGGATCGGTTTGGCAGCTTGCTAAGGCTTATGCCGCAGTCAATGACTCTGGTTATCATCA 1659
Query 1746 GCTTATAAGCCATTGGTTGCAAACGCATGCGGTGATTGAACCGTTCATAATCGCGTCCAA 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1660 GCTTATAAGCCATTGGTTGCAAACGCATGCGGTGATTGAACCGTTCATAATCGCGTCAAA 1719
Query 1806 TAGGCAGCTCAGCGTGGTCCATCCGATCCATAAACTTCTACATCCTCATTTCCGTGACAC 1865
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CAGGCAACTCAGCGTTGTCCATCCGATCCATAAACTTCTACATCCTCATTTCCGTGACAC 1779
Query 1866 TATGAACATCAACGCATTAGCGCGTCATGTACTCATAAACTCAGACGGAGTTCTTGAGAG 1925
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1780 GATGAACATCAACGCATTGGCGCGACATGTCCTCATAAACTCAGACGGAGTTCTGGAGAG 1839
Query 1926 AACAGTCTTCCCTAGTCGATACGCCATGGAAATGTCTTCTTCAATTTACAAGAATTGGGT 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 AACAGTCTTCCCTAGTCGATACGCCATGGAAATGTCTTCTTCAATTTACAAGAATTGGGT 1899
Query 1986 TTTCACCGAGCAGGCTCTCCCAAAAGACCTCCTCAAACGAGGAGTTGCTGTTGAAGATCC 2045
||||||||| || |||||||| ||||| |||||||||||||||||||| || ||||||||
Sbjct 1900 TTTCACCGATCAAGCTCTCCCCAAAGATCTCCTCAAACGAGGAGTTGCCGTCGAAGATCC 1959
Query 2046 AAACAGTGACAACGGCGTTAAGCTTCTGATCGAAGATTACCCGTTTGCGGTCGACGGTTT 2105
|| || ||||| || ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1960 GAAGAGCGACAATGGTGTTAAGCTTTTGATCGATGATTACCCGTTTGCGGTCGACGGTTT 2019
Query 2106 AGAGATTTGGTCAGCGATCAAAACATGGGTCACAGAGTACTGCACATTCTACTACAATAA 2165
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||
Sbjct 2020 AGAGATTTGGTCAGCGATCAAAACGTGGGTCACAGAGTACTGCTCATTCTATTACAAGAA 2079
Query 2166 TGACAAAACCGTCCAAACGGATACAGAGATCCAATCATGGTGGACCGAGCTCCGAACCAA 2225
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2080 TGACAAAACCGTCCAAACAGATACAGAGATCCAATCATGGTGGACCGAGCTCCGAAGCAA 2139
Query 2226 AGGCCACGGCGACAAACGACACGAGTCATGGTGGCCTTCGATGCAAACCCGCGACGACCT 2285
||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2140 AGGTCACGGGGACAAACAACACGAGTCATGGTGGCCTTCCATGCAAACCCGCGACGACCT 2199
Query 2286 AATCGAAACCTGCACGATCATCATCTGGATCGCCTCTGCTCTTCACGCAGCAGTAAATTT 2345
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2200 CATCGAAACCTGCACGATCATCATCTGGATCGCCTCTGCTCTTCACGCAGCAGTCAATTT 2259
Query 2346 CGGACAGTACCCTTACGCCGGTTTTCTCCCTAACCGTCCTACCGTCAGCCGCCGGTTTAT 2405
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2260 CGGACAGTACCCTTACGCCGGTTTTCTCCCTAACCGACCTACGGTCAGCCGCCGGTTTAT 2319
Query 2406 GCCTGAACCAGGTACGGATGAGTATGCTGAGCTGGAGGAAGATGCTGACGTAGCGTTCTT 2465
|||||||||||||||||||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct 2320 GCCTGAACCAGGTACGGATGAGTACGCTGAACTGGCTGAAGACGCTGACGTAGCCTTCTT 2379
Query 2466 GAAGACGATCACGCCGCAGTTACAGACTCTACTTGGTATCTCCATCATAGAGATATTGTC 2525
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2380 GAAGACGATCACGCCGCAGTTACAGACTCTACTTGGAATCTCCATCATAGAGATCTTGTC 2439
Query 2526 TATGCATTCAACGGACGAGATCTACTTAGGGCAAAGAGATTCACCGAATTGGACGGCGGA 2585
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2440 TATGCATTCAACGGACGAGATCTACTTAGGACAAAGAGATTCACCGAATTGGACGGCGGA 2499
Query 2586 TGATGAGCCTTTGGAGGCGTTTAAGCGGTTTGGGAAAGAACTTGAGCTGATAGAGAACAA 2645
|||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||
Sbjct 2500 TGATGAGCCTTTGGAGGCTTTTAAACGGTTTGGGAAAGAGCTTGAGTTGATAGAGAACAA 2559
Query 2646 TATTATACGAAGAAACAATGACAAGAGGTTCAAGAACAGAACCGGACCGGTTAACATACC 2705
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2560 TATTATACGAAGAAACAATGACAAGAGGTTCAAGAACCGGACCGGACCGGTTAACATACC 2619
Query 2706 GTACACATTGTTGTACCCGAATACTACGGATTATACGAGAGAAGGTGGGATTACTGGGAA 2765
|||||| ||||||||||||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 2620 GTACACTTTGTTGTACCCGAATACGACGGATTACACAAGAGAAGGTGGGCTTACTGGGAA 2679
Query 2766 AGGGATCCCGAACAGTGTCTCAATCTAAAGATAA 2799
||||||||| ||||||||||||||||||| ||||
Sbjct 2680 AGGGATCCCTAACAGTGTCTCAATCTAAATATAA 2713
Score = 1591 bits (861), Expect = 0.0
Identities = 1003/1069 (94%), Gaps = 19/1069 (2%)
Strand=Plus/Plus
Query 1 AAAAAGAACATTCTTATAATCACACatctctctc-tcttcattccccaagcatagaatct 59
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 AAAAAGAACATTCTTATAATCACACATCTCTCTCTTCTTCATTCCCCAAGCATAGAA--T 58
Query 60 ctccctctctatctatctctctTTCACCTTTTCTTGATTCTTACTCAGAGAAAATTCTGC 119
|| ||||| || |||||| | | ||||||||||||||| ||||||||||||||||||
Sbjct 59 CT--CTCTC--TC--TCTCTC-TGCCCCTTTTCTTGATTCTCACTCAGAGAAAATTCTGC 111
Query 120 AATATATATCGCCATGATCCACACCGACATCGCAGAGATCTTATGCGTCAAACCCAAGAC 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AATATATATCGCCATGATTCACACCGACATCGCAGAGATCTTATGCGTCAAACCCAAGAC 171
Query 180 AACGAAGAAGACAAAAACAATGGAGGAAGATGTCAAGAAGACGACGACGATGAAGATAGA 239
|| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 172 AAAGAAGAAGACAAAAACAATGGAGGAAGATGTCAAG-A-A-GACGACGATGAAGATAGA 228
Query 240 AGGAGAAGTTGTTGTGATGAAGAAGAATCTCCTTGATTTCAAAGACGTTATGGCTTCTCT 299
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 229 AGGAGAAGTGGTTGTGATGAAGAAGAACCTTCTTGATTTCAAAGACGTTATGGCTTCTCT 288
Query 300 TCTTGATCGTGTCAATGAGCTTCTTGGTCGTCGTGTCTCTCTCCACCTCATCAGCTCTCA 359
||||||||| ||| |||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 289 TCTTGATCGAGTCCATGAGCTTTTTGGTCGTCGTGTCTCTCTCCATCTCATTAGCTCTCA 348
Query 360 CCAACCCGACCCGGCCAATGAGAAGAGAGGAAGACTTGGAAAAGCAGCACATCTGGAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CCAACCCGACCCGGCCAATGAGAAGAGAGGAAGACTTGGAAAAGCAGCACATCTGGAAAA 408
Query 420 ATGGGTAACAAAAATAAAAACGTCAGTAACCGCTGAGGAAACTGCGTTTGGAGTAACGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 409 ATGGGTAACAAAAATAAAAACGTCAGTAACCGCTGAGGAAACTGCGTTTAGAGTAACGTT 468
Query 480 TGATTGGGACGAGTCAATGGGACCACCGGCTGCATTTGTGATCAAGAACCACCACCATAG 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 469 TGATTGGGACGAGTCAATGGGACCACCGGCTGCGTTTGTGATCAAGAACCACCACCACAG 528
Query 540 TCAATTCTACCTTAAGTCCCTCACCCTCCGCGGCTTCCCTGATGGCGAAGGTGGTGCCAC 599
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
Sbjct 529 CCAATTCTACCTTAAGTCCCTCACCCTCCGCGGCTTCCCCGCTGGCGAAGGCGGT----C 584
Query 600 TGCGATACATTTCATCTGCAATTCTTGGATTTACCCGAATCATCGATACCGCTCCGACCG 659
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 --CGATACACTTCGTCTGCAATTCTTGGATTTACCCGAATCATCGATACCGCTCCGACCG 642
Query 660 CGTTTTCTTCTCTAACAAGGCATATCTTCCAAGTGAAACACCGGAGCTAATCAaagagct 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGTTTTCTTCTCTAACAAGGCATATCTTCCAAGTGAAACACCGGAGCTAATCAAAGAGCT 702
Query 720 aagagaagaagagctaaagaatctaagaggcaatgagaaaggaggagaattcaaagaATG 779
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 703 AAGAGAAGAAGAGCTGCAGAATCTAAGAGGCAATGAGAAAGAAGGAGAATTCAAAGAATG 762
Query 780 GGACAGAGTTTACGACTACGCTTATTACAACGACTTGGGTGCTCCTGACAAGGGTCCTGA 839
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 763 GGACAGAGTTTACGATTACGCTTATTACAACGACTTAGGTGCTCCTGACAAGGGTCCTGA 822
Query 840 CTCAGTTCGTCCGGTTCTTGGCGGTTCACCTGAGCTGCCTTATCCTCGCCGTGGCAAAAC 899
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 823 CTCAGCTCGTCCGGTTCTTGGCGGTTCACCTGAGCTGCCTTATCCTCGTCGTGGCAAAAC 882
Query 900 CGGCCGTAAATCCACCAAATCAGACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCT 959
|||||||||| |||||||||| ||||||||||| || || |||||||| ||||||||| |
Sbjct 883 CGGCCGTAAACCCACCAAATCCGACCCTAAGTCCGAGAGTAGGCTGGCATTACTAAACTT 942
Query 960 AAACATATACGTGCCAAGGGACGAGCGATTTAGCCATGTGAAGTTTTCAGACTTCCTCGC 1019
||||||||||||||||||||||| || ||||||||||||||||| || ||||| || ||
Sbjct 943 GAACATATACGTGCCAAGGGACGAACGGTTTAGCCATGTGAAGTTCTCTGACTTTCTTGC 1002
Query 1020 TTATGCACTCAAGTCCGTGACTCAAGTGCTTGTCCCTGAGATCGCCTCT 1068
||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1003 TTACGCGCTCAAGTCGGTGACTCAAGTTCTTGTCCCTGAGATCGCCTCT 1051
Score = 202 bits (109), Expect = 1e-50
Identities = 122/128 (95%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1109 ATGTTTTTCACCTCTATGACGGTAGTATTAAGCTCG-CCAATGGTCACACCATTTCTAAG 1167
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1052 ATGTTTTTCACCTCTATGACGGTAGTATTAAGCTCGCCCAATGGTCACACCATTTCTAAG 1111
Query 1168 CTCCGTGATGTTATCCCGTGGGAGATGTTTAGAGAGCTAGTTCGCAACGACGGAGAACGG 1227
|| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1112 CTTCGTGACGTTATCCCATGGGAGATGTTTAGAGAGCTCGTTCGAAACGACGGAGAACGG 1171
Query 1228 TTCTTGAA 1235
||||||||
Sbjct 1172 TTCTTGAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112404312995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5