BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22410.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479753 jgi|Araly1|479753|fgenesh2_kg.3__2454__AT3G22410.1 2194 0.0
Ahg919235 jgi|Araly1|919235|scaffold_100516.1 60.2 4e-08
> Ahg479753 jgi|Araly1|479753|fgenesh2_kg.3__2454__AT3G22410.1
Length=1468
Score = 2194 bits (1188), Expect = 0.0
Identities = 1383/1475 (94%), Gaps = 21/1475 (1%)
Strand=Plus/Plus
Query 1 CAAACACGCAAATACAATCATTGTCGCAGCTTCTTTCTCTCCCAAAACATCC-A-A-TCt 57
||||||| ||||||||||||||||| ||||||||||||||||||||| |||| | | |||
Sbjct 1 CAAACACACAAATACAATCATTGTCCCAGCTTCTTTCTCTCCCAAAAAATCCAATATTCT 60
Query 58 tttttttttCCTTTC-TCTTCATCATCCTCTGTTTCTTCGTTCTTATAAACCAAAACAGA 116
||||||||||| ||| || ||| |||||||||||||||||||||| |||| |||| ||||
Sbjct 61 TTTTTTTTTCC-TTCTTCATCACCATCCTCTGTTTCTTCGTTCTTTTAAAACAAAGCAGA 119
Query 117 GAGATTTAAGAGATCTTCATaaaaaaaaaTGGGGAAGAAAGATGAGAAAGTCGAAGCTGT 176
||||||| |||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 120 GAGATTTTAGAGATCTTCAT-CAAGAAAATGGGAAAGAAAGACGAGAAAGTCGAAGCTGT 178
Query 177 TCTTCGCTTGGTCAAGAAACAATCTCCACTCACTTTTAAACAAGAGAAGTTCTGTAACAG 236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTTCGTTTGGTCAAGAAACAATCTCCACTCACTTTTAAACAAGAGAAGTTCTGTAACAG 238
Query 237 AGAGTGTGTTGAGAGATTCTTGAAGGTGAAAGGAGATAATGTGAAAAAAGCAGCGAAACA 296
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 239 AGAGTGTGTTGAGAGATTCTTGAAGGTTAAAGGAGATAATGTGAAAAAAGCTGCGAAACA 298
Query 297 ACTCAGTTCATGTCTTTCTTGGAGACAAAATTTCGATATTGAGCGATTGGGAGCAGAGGA 356
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 299 ACTCATTTCATGTCTTTCTTGGAGACAAAGCTTCGATATTGAGCGATTAGGAGCAGAGGA 358
Query 357 GTTCTCGACGGAACTTAGCGACGGTGTAGCTTACATCTCCGGCCACGACAGAGAATCAAG 416
|||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct 359 GTTCTCGACGGAGCTTAGCGATGGTGTAGCTTACATCTCCGGTCACGACGGAGAATCAAG 418
Query 417 ACCCGTTATTATTTTCCGTTTTAAGCATGATTATCAGAAGCTGCATACCCAAAAACAATT 476
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 ACCTGTTATTATTTTCCGTTTTAAGCATGATTATCAGAAGCTGCGTACCCAAAAACAATT 478
Query 477 TACGCGTTTGGTAGCGTTCACGATTGAGACTGCGATTTCAAGCATGTCCAGAAACACGGA 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 TACGCGTTTGGTGGCGTTCACGATTGAGACTGCGATTTCAAGCATGTCCAGAAACGCGGA 538
Query 537 ACAGAGCTTTGTTCTTCTCTTTGATGCAAGCTTTTTCAGATCATCCTCTGCATTTGCGAA 596
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 539 ACAGAGCTTTGTTCTTCTCTTCGATGCAAGCTTTTTCAGATCATCCTCTGCATTTGTGAA 598
Query 597 TTTGCTTTTGGCGACCCTAAAAATCATCGCAGATAATTACCCATGCCGACTTTACAAAGC 656
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TTTGCTTTTGGCGACCCTAAAAATCATCGCAGATAATTACCCATGCCGACTTGACAAAGC 658
Query 657 CTTTATCATCGACCCTCCCTCTTTTTTCTCTTACCTTTGGAAGGGTGTTCGTCCTTTTGT 716
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTTATCATCGACCCTCCCTCTTATTTCTCTTACCTTTGGAAGGGTGTTCGTCCTTTTGT 718
Query 717 GGAGCTCTCAACGGCCACGATGATACTGTCGTCTCTAGACTACGACGAACCGCTAGATAT 776
|||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 719 GGAGCTCTCAACGGTCACGATGATAGTGTCGTCTCTAGACTTCGACGAAAGGCTAGATAT 778
Query 777 CACCCACGTGTCATCAAATCCTCGATCAACATCTTTAAGATTCGACGCATCGTCGATTAA 836
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CAGCCACGTGTCGTCAAATCCTCGATCAGCATCTTTAAGATTCGACGCATCGTCGATTAA 838
Query 837 ATCAACGGCCTCGATTGGTTCAGCTTCTTCAAGATTCGCTTTCACAGTCTCTCAGAACTC 896
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 839 ATCAACGGCCACGATTGGTTCAGCTTCTTCAAGATTCGCTTTCACCGTCTCTCAAAACTC 898
Query 897 GTTGAAGCCGTGGTATCTTTCCTTCACCGACACGTCACCTTATAACCCCGCCGTCTCATC 956
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CTTGAAGCCGTGGTATCTTTCATTCACCGACACGTCACCTTATAACCCCGCCGTCTCCTC 958
Query 957 CTCCGCCGCTGCTCCTGTTTCTCCTCTCAGTGCACGGTCGTTACCCTTCGCGTCTCCGGC 1016
||| |||| |||| |||||||||||||| ||||||||| || ||||||||||||||
Sbjct 959 ATCCACCGCCGCTCAAGTTTCTCCTCTCAGCGCACGGTCGCTATATTTCGCGTCTCCGGC 1018
Query 1017 GGTGCGTGGTTTCAAAGACGCGAAACCAGCCGCATGCAGAAAGAGTCTGTTTCCATCGAC 1076
|| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1019 GGCGCGTGGTTTCAAAGAAGCGAAACCAGCTGCATGCAGAAAGAGTTTGTTTCCATCTAC 1078
Query 1077 GCCGTTGCCGGAGAAGACAAAGACGGTTTCGTATCGGAAAACTCCACGTCCTTCGTTCTT 1136
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1079 GCCGTTGCCGGAGAAGACAAAGGCGGTTTCGTACCGGAAAACTCCACGTCCTTCGTTCTT 1138
Query 1137 TCAGTCGCCGGCGATGTTCTTTCGTC-GGGAGAACAATGTCGGTGGAGGAGGCGAGAAGT 1195
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 1139 TCAGTCGCCGGCGATGTTCTTTCG-CAGGGAGAATAATGTCGGTGGAGGAGGCGAGAAGT 1197
Query 1196 CACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAGACTGCGT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAGACTGCGT 1257
Query 1256 ATAGGTCTAAGTTACGTGGTCCACGTGGATTTCTGTCGGTCGTGTCTTCTCACAGAAGAT 1315
||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||| ||||
Sbjct 1258 ATAGGTCTAAGCTGCGTGGTCCAGGTGGATTTGTGTCGGTCGTGTCTTCGCACAGGAGAT 1317
Query 1316 CTCGCCACGTGTCTTTATCTCAACGGTTCTGATTTAACAA-ACGAGATTTGGGGAACGAG 1374
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1318 CTCGCCACGTGTCTTTATCTCAACGGTTCTGATTTAA-AAGACGAGATTTGGGGAACGAG 1376
Query 1375 TACATATAATTAGAAGATAATCA--CA-T----T-GATCTGTTCCAAATACGCTTTTTTC 1426
|| ||||||||||||||||||| || | | |||||||||||||||| |||||| |
Sbjct 1377 TA--TATAATTAGAAGATAATCAATCAATCACATTGATCTGTTCCAAATACTCTTTTT-C 1433
Query 1427 TAGACTTGCATGTCTATTACGGTGATATTAGGCTA 1461
|||||||||||||||||||||||||||||||||||
Sbjct 1434 TAGACTTGCATGTCTATTACGGTGATATTAGGCTA 1468
> Ahg919235 jgi|Araly1|919235|scaffold_100516.1
Length=1396
Score = 60.2 bits (32), Expect = 4e-08
Identities = 123/165 (75%), Gaps = 13/165 (8%)
Strand=Plus/Plus
Query 1189 GAGAAGTCACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAG 1248
|||||| |||| || |||| || | || ||| ||||| || || |||||||||||||||
Sbjct 1215 GAGAAGCCACGAGATTCGTTCGTTCAGTTTCTCAAGTTCTATCGTAGACCGTACGATGAG 1274
Query 1249 ACTG-CGTATAGGTCTAAGTTACGTGGTCCA-CG-T--G-GAT-TTCTGTCGGTCGTGTC 1301
| || | |||||||| ||| | | || ||| || | | | | || | || | || ||
Sbjct 1275 A-TGACTTATAGGTCAAAG--ATGCGG-CCACCGCTCGGTGGTCTTGTCTCCATTGTTTC 1330
Query 1302 TTCTCACAGAAGATC-TCGCCACGTGTCTTTATCTCAACGGTTCT 1345
|||| | ||| | ||||||||||||||||||||||||||||
Sbjct 1331 AACTCAGATTAGA-CGCCGCCACGTGTCTTTATCTCAACGGTTCT 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5