BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22415.1

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479754 jgi|Araly1|479754|fgenesh2_kg.3__2455__AT3G22415.1         579    6e-165


> Ahg479754 jgi|Araly1|479754|fgenesh2_kg.3__2455__AT3G22415.1
Length=372

 Score =  579 bits (313),  Expect = 6e-165
 Identities = 355/375 (95%), Gaps = 4/375 (1%)
 Strand=Plus/Plus

Query  1    ATTTGCAAGAGCTAAGGCATTGTATAAGAAATGGGATGGCTCCATTCTTTCTTCTCTCCT  60
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  1    ATTTGCAAGAGCTAAGGCATTGTATAAGAAATGGGGTGGCTCCATTCCTTCTTCTCTCCT  60

Query  61   TTGAAGAAACTATGGTTTAGCGTCAATTCTGCTCAAAAGAAGAGAAGAGGGATATACATA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGAAGAAACTATGGTTTAGCGTCAATTCTGCTCAAAAGAAGAGAAGAGGGATATACATA  120

Query  121  TTATACGAGGACGTGAAGTCATGCCCATACGAAGATGTGCATGTTTTGTGGTCTATACTT  180
            ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct  121  TTATATGAGGACGTCAAGTCATGTCCATACGAAGATGTGCAAGTTTTGTGGTCTATACTC  180

Query  181  GTGGAGTCTCACCCACACACTTTGCAAATCAAACAATGATAAATCCATTTCATTACTCTC  240
            ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  181  GTGGAGTCTCACCCACATACTTTGCAACTCAAACAATGATAAATCCATTTCATTACTCTC  240

Query  241  TTTTTGGTTCAGAGGGTTCATACACCGAATGTTCATGCTCGAGGTCAAAACGAAGAAGAT  300
            |||||||||||||| ||||||||  |||||| |||||||||||||| |||||||||||| 
Sbjct  241  TTTTTGGTTCAGAGAGTTCATACTTCGAATGATCATGCTCGAGGTCGAAACGAAGAAGA-  299

Query  301  AATT-CTTAATGGCATGATTCATATATCTGTTTTCTCTCCTCACGTACTGTACATATAAT  359
            |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  300  AATTTCTTAATGGCATGATTCATATATCTGTTTTCTCTCCTCACTTAATGTACATATAAT  359

Query  360  ATAAATACACAGAGA  374
            |||||  ||||||||
Sbjct  360  ATAAA--CACAGAGA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13659700862


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5