BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22420.2
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905276 jgi|Araly1|905276|Al_scaffold_0003_2404 1857 0.0
Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2 344 1e-93
> Ahg905276 jgi|Araly1|905276|Al_scaffold_0003_2404
Length=1788
Score = 1857 bits (1005), Expect = 0.0
Identities = 1155/1229 (94%), Gaps = 4/1229 (0%)
Strand=Plus/Plus
Query 784 GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATGAGTTGGTTGAT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATGAGTTGGTTGAT 621
Query 844 GTATATGCTTTTGGCATGTGTGTGTTGGAGATGGTTACTTTTGATTATCCTTACAGTGAA 903
|||||||||||||| |||||||||||||||||||||||||| |||||||| || || |||
Sbjct 622 GTATATGCTTTTGGAATGTGTGTGTTGGAGATGGTTACTTTCGATTATCCGTATAGCGAA 681
Query 904 TGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGGGAAAAAGCCTGAAGCTTTT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGGGAAAAAGCCTGAAGCTTTT 741
Query 964 TACTTAGTGAAGGATCCTGAGGTTCGTGAGTTTGTTGAGAAGTGTTTAGCTAACGTGACG 1023
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 742 TACTTAGTGAAGGACCCTGAGGTTCGTGAGTTTGTTGAGAAGTGTTTAGCTAGTGTGACG 801
Query 1024 TGTAGGCTAACGGCATTGGAGCTTTTACAAGACCCTTTTCTACAAGATGATAATATGGAT 1083
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 802 TGTAGGCTAACGGCATTGGAGCTTTTACAAGACCCTTTTCTACGAGAAGATAATGTGGAT 861
Query 1084 GGATTTGTTATGAGACCTATTGATTACTACAATGGTTATGATGAAACTGGTGTGTTCCTT 1143
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GGATTTGATATGAGACCTATTGATTACTACAATGGTTATGATGAAACTGGTGTGTTCCTT 921
Query 1144 AGACATCCTTTGATTGATGATCCTCTTTACCATGATCAGTTTGAGTCGTCACAGATATGT 1203
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGACAACCTTTGATTGATGATCCTCTTTACCATGATCAGTTTGAGTCGTCACAGATATGT 981
Query 1204 GAGATCGATCTTTTCGCTAACGATGATGAAGATCATGTCGACATTTCGATTAAAGGGAAG 1263
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 982 GAGATCGATCTTTTCGCTAACGATGATGAAGACCATGTCGACATTTCGATTAAAGGGAAG 1041
Query 1264 AGAAACGGTGATGATGGGATATTCTTGAGACTTAGAATATCTGATGCTGAAGGTATAGTT 1323
|||||||| |||||||||||||||||||| |||||||| || ||||||||||||| ||||
Sbjct 1042 AGAAACGGCGATGATGGGATATTCTTGAGGCTTAGAATCTCCGATGCTGAAGGTAAAGTT 1101
Query 1324 TCAATCTTTTTCGATAGTTTTAAAATCATCGGTCTTAAAAACGTAACACGCTTTCGAGTT 1383
|||||| |||||| ||| |||| ||||| |||||||||| ||||| | |||||||| ||
Sbjct 1102 TCAATCATTTTCGGTAGGCTTAAGATCATTGGTCTTAAAACCGTAAAATGCTTTCGACTT 1161
Query 1384 TTGGGTAATGTAGGACGGATAAGGAACATTTACTTCCCGTTTGAGACGGCTATTGATACT 1443
|| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1162 TTATGTAATGCAGGACGGATAAGGAACATTTACTTCCCGTTTGAGACAGCTATTGATACT 1221
Query 1444 GCATGGAGTGTAGCGGTTGAGATGGTGTCAGAGCTCGACATAACGAATCAAGATGTTGCG 1503
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1222 GCATGGAGTGTAGCGGCTGAGATGGTATCTGAGCTCGACATAACGAATCAAGATGTTGCG 1281
Query 1504 AAAATCGCGGAGATGATCGATGCAGAGATTGCTGCATTGGTGCCTGATTGGAAAAATGAT 1563
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 1282 AAAATCGCAGAGATGATCGATGCAGAGATTGCTGCGTTGGTACCTGATTGGAAAACTGAT 1341
Query 1564 ACAGAAAGTTCC-CAAAATGTAaacaacaacaagaacaacaacaCTGCAGGATTCTGTGG 1622
|||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1342 ACAGAAAGTTCCTCAAA-TGTGAACAACAACAACAACAACAACACTGCAGGATTCTGTGG 1400
Query 1623 AGAGTGTGCTTCAAACGGGTATATACAAGAGACTGTATCATCAGGAGAAAAATCTCATCA 1682
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AGATTGTGCTTCAAACGGGTATATACAAGAGACTGTATCATCAGGAGAAAAATCTCATCA 1460
Query 1683 TAATCATCATGAGTTCGATAGTTCTGAAGACAAGAGCTGTTCTTCGGTTCACGGTAGGTT 1742
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1461 TCATCATCATGAGTTCGATAGTTCTGACGACAAGAGCTGTTCTTCGGTTCACGGTAGGTT 1520
Query 1743 TGCGGATATGTGGGGTTTGCGAGAATCATATTCTGATGATGGAGAAAAACAGAGCTCAAG 1802
||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1521 TGCGGATATTTGGGGTTTGAGAGAATCATATTCTGATGATGGAGGAAAACAGAGCTCAAG 1580
Query 1803 GAAGGTTAGAAGTGGACGGTGGTCGGAGAATGAGATGAGACGAGAACTGAGATGGCTTAA 1862
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GAAAGTCAGAAGTGGGCGGTGGTCGGAGAATGAGATGAGACGAGAACTGAGATGGCTTAA 1640
Query 1863 GGCAAGGCACAAGATTCAACTTATGAAAATGAGAGGTCAAACGATCTGCGAGACACCGAT 1922
||||||||| | |||||| ||||||||| | |||||||||||||| ||||| |||||| |
Sbjct 1641 GGCAAGGCATAGGATTCAGCTTATGAAAGTAAGAGGTCAAACGATATGCGATACACCGTT 1700
Query 1923 AGAGATCTCTCTTACACCGGGAACTTCAGT-TTCGTTACCTCTTCTTTACAGGGCTATAT 1981
||||||||| | || ||||||| |||| | |||| ||||||||||||||||| ||||
Sbjct 1701 GGAGATCTCTGTCACGCCGGGAAATTCA-TCTTCGCCGCCTCTTCTTTACAGGGCGATAT 1759
Query 1982 CACTTCCTGTGGATGCCGTGGATATGTGA 2010
| |||||||||||||| ||||||||||||
Sbjct 1760 CGCTTCCTGTGGATGCTGTGGATATGTGA 1788
Score = 963 bits (521), Expect = 0.0
Identities = 550/564 (98%), Gaps = 2/564 (0%)
Strand=Plus/Plus
Query 127 ATGAATGGTGAAGAAAGCTTTGTAGAAGATTGCTCTGTTTTTGTTGAGATTGATCCTTCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGGTGAAGAAAGCTTTGTAGAAGATTGCTCTGTTTTTGTTGAGATTGATCCTTCT 60
Query 187 GGAAGATATGGAAGATACGATGAAATACTTGGCAAAGGAGCTTCAAAGACAGTATACAGA 246
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GGAAGATATGGAAGATACGATGAAGTACTTGGCAAAGGAGCTTCAAAGACAGTATACAGA 120
Query 247 GCATTTGATGAGTATGAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTTCGAAATTTC 306
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTTTGATGAGTATGAAGGGATTGAAGTAGCATGGAACCAAGTAAAGCTTCGAAATTTC 180
Query 307 ACAAGGAATCCTGAGGAATTAGAGAAGTTTTTCAGAGAGATTCATCTTCTCAAGACTTTG 366
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGAATCCTGAGGAACTAGAGAAGTTTTTCAGAGAGATTCATCTTCTCAAGACTTTG 240
Query 367 AATCATCAAAACATTATGAAATTCTACACTTCTTGGGTTGATACCAACAATTTATCAATC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCATCAAAACATTATGAAATTCTACACTTCTTGGGTTGATACCAACAATTTATCAATC 300
Query 427 AATTTTGTCACTGAACTCTTCACCTCTGGTACTCTCAGACAGTATAGGTTGAGACATAGA 486
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AATTTTGTCACTGAACTCTTTACCTCTGGTACTCTTAGACAGTATAGGTTGAGACATAGA 360
Query 487 AGAGTGAATATTAGAGCAGTGAAGCAATGGTGCAAGCAGATTTTAAAAGGGCTTCTTTAT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGTGAATATTAGAGCAGTGAAGCAATGGTGCAAGCAGATTTTAAAAGGGCTTCTTTAT 420
Query 547 -TTACATAGTCGTTCTCCACCAATTATACATAGAGATCTCAAATGTGATAACATTTTCAT 605
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 421 CTT-CATAGTCGTTCTCCACCAATTATTCATAGAGATCTTAAATGTGATAACATTTTTAT 479
Query 606 CAATGGAAACCAAGGTGAAGTCAAGATCGGTGACCTTGGACTCGCTGCGATTCTTCGTAA 665
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CAATGGAAACCAAGGTGAAGTCAAGATCGGCGACCTTGGACTCGCTGCGATTCTTCGTAA 539
Query 666 ATCACATGCCGTTCGTTGCGTTGG 689
||||||||| ||||||||||||||
Sbjct 540 ATCACATGCTGTTCGTTGCGTTGG 563
> Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2
Length=1502
Score = 344 bits (186), Expect = 1e-93
Identities = 403/505 (80%), Gaps = 26/505 (5%)
Strand=Plus/Plus
Query 153 AGATTGCTCTGTTTTTGTTG-AGATTGATCCTTCTGGAAGATATGGAAGATACGATGAAA 211
||||| ||||| | ||||| || |||||||| |||||||||||||||| ||| |||||
Sbjct 34 AGATTACTCTGAGTATGTTGAAG-TTGATCCTACTGGAAGATATGGAAGGTACAATGAAG 92
Query 212 TACTTGGCAAAGGAGCTTCAAAGACAGTATACAGAGCATTTGATGAGTATGAAGGTATAG 271
| || || |||||| |||||||||| || ||||||| ||||||||||||| |||||||||
Sbjct 93 TTCTGGGTAAAGGATCTTCAAAGACTGTCTACAGAGGATTTGATGAGTATCAAGGTATAG 152
Query 272 AAGTAGCATGGAACCAAGTAAAGCT-T-CGAAAT-TTCACAAGGAATCCTGAGGAATTAG 328
||||||||||||||||||||||||| | ||| | || || | | |||| | ||| | |
Sbjct 153 AAGTAGCATGGAACCAAGTAAAGCTCTACGATTTCTTG-CA-G-AGTCCTCAAGAACTGG 209
Query 329 AGAAGTTTTTCAGAGAGATTCATCTTCTCAAGACTTTGAATCATCAAAA-CATTATGAAA 387
||| | ||| | | ||||||||||| ||||||||| | || || ||||| ||| |||||
Sbjct 210 AGAGGCTTTACTGTGAGATTCATCTCCTCAAGACTCTAAAACA-CAAAAGCATCATGAAG 268
Query 388 TTCTACACTTCTTGGGTTGATACCAACAATTTAT-CAATCAATTTTGTCACTGAACTCTT 446
|||||| |||||||||| |||||| | ||| | || |||| |||||||||||| | ||
Sbjct 269 TTCTACGCTTCTTGGGTCGATACCGATAATCGAAACA-TCAACTTTGTCACTGAAATGTT 327
Query 447 CACCTCTGGTACTCTC-AGACAGTATAGGTTGAGACATA-GAAGAGTGAATATTAGAGCA 504
||| ||||| || || |||||||||||| | | ||||| || ||||||| || |||||
Sbjct 328 CACTTCTGGCAC-CTTGAGACAGTATAGGCTAAAACATAAGA-GAGTGAACATAAGAGCG 385
Query 505 GTGAAGCAAT-GGTGCA-AGCAGATTTTAAAAGGGCTTCTT-TAT-TTACATAGTCGTT- 559
|| ||| ||| |||| | | |||||||||| ||| ||| ||| || |||| | |
Sbjct 386 GTAAAG-AATTGGTGTAGA-CAGATTTTAAGAGG-CTTAAACTATCTT-CATACACATGA 441
Query 560 CTCCACCAATTATACATAGAGATCTCAAATGTGATAACATTTTCATCAATGGAAACCAAG 619
| || || | || |||||||||||||||||||| |||||||| || ||||| |||||||
Sbjct 442 C-CCTCCTGTGATTCATAGAGATCTCAAATGTGACAACATTTTTATTAATGGGAACCAAG 500
Query 620 GTGAAGTCAAGATCGGTGACCTTGG 644
| ||||||||||| ||||| |||||
Sbjct 501 GAGAAGTCAAGATTGGTGATCTTGG 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79989514500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5