BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22430.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479760 jgi|Araly1|479760|fgenesh2_kg.3__2461__AT3G22430.1 1133 0.0
Ahg318974 jgi|Araly1|318974|fgenesh1_pm.C_scaffold_3001990 970 0.0
> Ahg479760 jgi|Araly1|479760|fgenesh2_kg.3__2461__AT3G22430.1
Length=1164
Score = 1133 bits (613), Expect = 0.0
Identities = 885/1007 (88%), Gaps = 55/1007 (5%)
Strand=Plus/Plus
Query 82 AAAACCTTCCCTTTACGATTTCTCCATAGCAGACACAGATTCATACTCTGCGAATTGCTC 141
||||||||||||||||||||| |||||||||||||||| || || | || |||
Sbjct 33 AAAACCTTCCCTTTACGATTTTTCCATAGCAGACACAG----AT--TC--C---TT-CTC 80
Query 142 AAGGTAGAAGAAGCAGATTCACGATCCCAATTCCCCTATTAACGGCCATTGAAGATGGTC 201
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 81 AAGGTAGAAGAAGCAGATTCACGATCCCAAAACCCC----AA-GGCCATTGAAGATGGTC 135
Query 202 GGG---AGCAACAACAACGCCAAGTCATCGACGAACAAGCCTCCAGCAACTTCCATC-CC 257
||| | |||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 136 GGGAACAACAACAACAACGCCAAGTCATCGACGAACAAGCCTCCGGCAACTTCC-GCTCC 194
Query 258 CACCGCTGCAGCTTCATCTTCACAGAACCATAAACCTC-GTGTGAATTCAACTAACAACG 316
||||||||||||||| |||||||||||||||||| ||| || |||||| ||||||||||
Sbjct 195 CACCGCTGCAGCTTCCTCTTCACAGAACCATAAATCTCATTG-GAATTCGACTAACAACG 253
Query 317 ATGGTGGAATCAGTaacaacaacaacaacaacaaGAAAGAAAGCAAGCCGATGATGATAG 376
||||||||| |||| ||| || |||| | || |||||||||||||| || || ||
Sbjct 254 ATGGTGGAACCAGT---AAC-AC--CAAC-A-AA-AAAGAAAGCAAGCC---GACGACAG 301
Query 377 GTGTCCAGAAAACCGCCGATAAGAAACCACTGAAGCCTAATCCATCTCCTAAGCTAGCTC 436
||| |||||||| |||||||||||||| | |||||||||| |||||||| |||||||
Sbjct 302 GTGGCCAGAAAATCGCCGATAAGAAACTTCCGAAGCCTAATTTTTCTCCTAAACTAGCTC 361
Query 437 CGATCCCGAAACAATCTAATCCGAATCATCAAAATCAAACGGGTCCATCATCTTCACGAC 496
|||| ||||||||||| ||||| ||||||| ||||| ||| | ||||||||||||||| |
Sbjct 362 CGATTCCGAAACAATCCAATCCTAATCATCCAAATCCAACAGCTCCATCATCTTCACGGC 421
Query 497 CAATGGCTCCGTTTCCTTTCCCTGATTCATCTCCCGCGCTAGGTCCTCCTCCTCAACCGA 556
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 422 CAATGGCTCCGTTTCCTTTCCCTGATTCATCTGCGGCGCTAGGTCCTCCTCCTCCCCCGA 481
Query 557 CTTATGGATTCCATATG-TTAGAGCGTCGCACAATTGTTCTCGCTGATGGTAGTGTCCGT 615
| |||||||| |||||| || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 482 CGTATGGATTTCATATGCTT-GAGCGGCGCACAATTGTTCTCGCTGATGGTAGTGTTCGT 540
Query 616 TCCTACTTCGCTCTTCCTCCTAATTA-CATGGATTTTCCTCCTCAGAGTCGATTAGCTGG 674
|||||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||
Sbjct 541 TCCTACTTCGCTCTTCCTCCTAATTACCA-GGATTTTCCTCCTCAGAGTCGACTAGGTGG 599
Query 675 ACCGGTATTTGGGAGATTCCCTCCTTTTTACCCGGAAGAGTTTCGAGATCAGCGGATGAA 734
||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 ACCGGAATTTGGTAGATTTCCTCCCTTTTACCCGGAAGAGTTTCGAGATCAGCGGATGAA 659
Query 735 ACGGAAGTATCCAGGtgaagaagagattgataggagagatgagagagctgagatgatgag 794
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 660 ACGGAAATATCCAGGTGAAGAAGAGATTGATAGGAGAGACGAGAGAGCTGAGATGCTGAG 719
Query 795 acagagaCAGCAGTTTATGCAGTATGCGAATCCTAATGATCACTCATTTATGGCTGGTAC 854
||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 720 ACAAAGACAGCACTTTATGCAGTATGCGAATCCTAATGATCAATCACTTATGGCTGGTAC 779
Query 855 GAGTAG--G---G------A----TGTTGGAGAGGATGTTAGAGCTGCTAAGCATATGAG 899
|||||| | | | ||||||||| |||| |||||| |||||||||||| |
Sbjct 780 GAGTAGTAGTCCGTTTCTTAGGGATGTTGGAGAAGATGGTAGAGCAGCTAAGCATATGCG 839
Query 900 GGTAGGATCAAGTAGGCATGACAATGGAGGTTTCCAGGTTGACCAGGTTGCTCTAAAGAA 959
| ||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 840 GATAGGATCAAGTAGGCATGACAATGGAGGTCTATTGATTGACCAGGTTGCACTAAAGAA 899
Query 960 ATCGTTTTTGGGTTTTGTTAAGCGAGTTTTCGAGGATCCGATGGAGAAGAAGAACTACTT 1019
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 900 ATCGTTTTTGAGTTTTGTTAAGCGAGTTTTCGAGGACCCGACAGAGAAGAAGAACTACTT 959
Query 1020 GGAGAACGGGAGAAAAGGGCGGCTTCAGTGTCTCGTTTGTGGCAGGT 1066
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 GGAGAACGGGAGGAAAGGGCGGCTTCAGTGTCTCGTTTGTGGCAGGT 1006
> Ahg318974 jgi|Araly1|318974|fgenesh1_pm.C_scaffold_3001990
Length=627
Score = 970 bits (525), Expect = 0.0
Identities = 593/627 (95%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 1102 ATGCACACATACTGTTCTGATGATTCTAGCTCACGCGTGCATCATTTAGGCCTACACAAA 1161
||||||||||||||||||| |||| |||| ||||| |||| ||| |||||||||||||||
Sbjct 1 ATGCACACATACTGTTCTGGTGATGCTAGTTCACGTGTGCGTCACTTAGGCCTACACAAA 60
Query 1162 GCTCTCTGTGTATTGATGGGATGGAATTTCTCAAAGGCTCCTGATAATTCAAAGGCATAC 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCTCTGTGTATTGATGGGATGGAATTTCTCAAAGGCTCCTGATAATTCAAAGGCATAC 120
Query 1222 CAGAATCTACCTGCTGATGAGGCAGCAATCAACCAAGCCCAGCTAATTATTTGGCCACCT 1281
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 CAGAATCTACCTGCTGAAGAGGCAGCAATCAATCAAGCCCAGCTGATTATTTGGCCACCT 180
Query 1282 CATGTTATTGTTCAGAATACCAGTACAGGGAAGGGAAAAGAAGGGCGCATGGAAGGCTTT 1341
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CATGTTATTGTTCATAACACCAGTACAGGGAAGGGTAAAGAAGGGCGCATGGAAGGCTTT 240
Query 1342 GGAAACAAAACAATGGATAACAGAATTAGAGAACTAGGACTCACTGGTGGGAAATCGAAG 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGAAACAAAACAATGGATAACAGAATTAGAGAACTAGGACTCACTGGTGGGAAATCAAAG 300
Query 1402 TCGTTGTATGGAAGAGAGGGTCATTTGGGAATTACCCTGTTCAAGTTTGCTGGAGACGAT 1461
|| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 301 TCACTGTATGGAAGAGAGGGTCATTTGGGAATTACATTGTTCAAGTTTGCGGGAGACGAT 360
Query 1462 TCAGGGCTCAGGGATGCTATGAGAATGGCAGAATATTTTGAGAAGATAAACCGTGGGCGT 1521
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGGGCTCAGGGACGCTATGAGAATGGCAGAATATTTTGAGAAGATAAACCGTGGGCGT 420
Query 1522 AAGAGTTGGGGGAGGGTACAGCCACTCACTCCAAGCAAAGATGATGAGAAAAACCCTGGT 1581
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 421 AAGAGTTGGGGTAGGGTACAAACACTCACTCCAAGCAAAGATGATGAGCAAAACCCTAGT 480
Query 1582 CTTGTCGAGGTTGATGGGAGGACGGGAGAGAAAAAGAGGATCTTTTATGGTTATCTCGCG 1641
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||
Sbjct 481 CTTGTCGAGGTTGATGGGAGGACAGGTGAGAAAAAGAGGATCTTTTATGGCTATCTTGCT 540
Query 1642 ACTGTAACGGACTTGGACAAAGTCGATGTGGAGACAAAGAAGAAAACCACAATCGAGAGC 1701
|||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 541 ACTGTAACAGACTTGGACAAAGTCGATATGGAGACAAAGAAGAAGACCACAATAGAGAGC 600
Query 1702 CTTAGAGAACTCACAAGAACAAAGTAA 1728
||||||||||||||| |||||||||||
Sbjct 601 CTTAGAGAACTCACAGGAACAAAGTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5