BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22470.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479765 jgi|Araly1|479765|fgenesh2_kg.3__2466__AT3G22470.1 2593 0.0
> Ahg479765 jgi|Araly1|479765|fgenesh2_kg.3__2466__AT3G22470.1
Length=1940
Score = 2593 bits (1404), Expect = 0.0
Identities = 1761/1931 (91%), Gaps = 33/1931 (2%)
Strand=Plus/Plus
Query 95 AAAAGCTTCGAACTTTACTCAGATTCTTGAGAAAGGTAC---------TTCTTTATTACA 145
||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 22 AAAAGCTTCGAACTTTACTCAGATTATTGATAAAGGTACTTTGAGAATTTCTTTATTACA 81
Query 146 CTATTCTAGTATCACCGAAGCG-AAGCTTTCTTATAAAGAGAGATTAAGGAATGGGATTG 204
||||||| |||||| ||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 82 CTATTCTTGTATCAGCGAAGCGAAAG-TTTCTTATAAAGAGAGATTGAGGAATGGGATTG 140
Query 205 TTGATATTAAGGTTAATGATGCTATTGATCTCTTCGAATCCATGATTCAATCTCGTCCTT 264
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTGATATTAAGGTTAATGAAGCTATTGATCTCTTCGAATCCATGATTCAATCTCGTCCTT 200
Query 265 TACCTACTC-CAATCGATTTCAATAGATTGTGTAGTGCTGTTGCTAGAACGAAACAGTAT 323
|||| | || | || ||||||| || ||||| ||||||||||||||||| |||| | |||
Sbjct 201 TACCAAGTCTC-ATTGATTTCAGTAAATTGTTTAGTGCTGTTGCTAGAAGGAAAGAATAT 259
Query 324 GATTTAGTGTTAGGTTTCTGCAAGGGAATGGAGTTGAATGGGATTGAGCATGACATGTAT 383
||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||
Sbjct 260 GATTTAGTGTTAGGTTTCTGCAAGGAAATGGATTTGAATGGGATTGAACATAACATGTAT 319
Query 384 ACTATGACCATTATGATCAATTGCTATTGTAGAAAAAAGAAACTTCTTTTCGCATTTTCT 443
||||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||
Sbjct 320 ACTATGAACATTATGATCAATTGCTTTTGTCGAAAAAGGAAACTTCTTTTCGCTTTTTCG 379
Query 444 GTTCTTGGGAGAGCT-TGGAAGCTTGGGTATGAGCCTGATACAATCACGTTTTCGACTTT 502
||| ||||||||||| | ||| |||||| ||||||| |||| || ||||||||||||||
Sbjct 380 GTTGTTGGGAGAGCTCT-GAAATTTGGGTTTGAGCCTAATACGATTACGTTTTCGACTTT 438
Query 503 GGTTAACGGGTTTTGCCTCGAGGGTAGAGTTTCTGAAGCGGTTGCGTTAGTTGATCGGAT 562
| ||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 439 GATTAACGGGTTTTGCCTCGAGGGTAGAGTTTCCGAAGCTGTGGCTTTAGTTGATCGGAT 498
Query 563 GGTGGAAATGAAGCAAAGACCGGATCTTGTAACCGTTAGCAC-TCTGATCAATGGACTTT 621
||||||||||||| |||||||| || |||| || |||| ||| | |||||||||||||||
Sbjct 499 GGTGGAAATGAAGGAAAGACCGAATGTTGTGACGGTTAACACGT-TGATCAATGGACTTT 557
Query 622 GTCTAAAGGGTAGAGTGTCTGAAGCTTTGGTTTTGATTGATAGGATGGTTGAGTATGGTT 681
|||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 558 GTCTTAAGGGTAGAGTGACTGAAGCTTTGGTTTTGATTGATAGGATGGTTGAATATGGGT 617
Query 682 TTCAACCTGATGAGGTTACTTATGGACCGGTTTTGAATAGACTGTGTAAGTCAGGGAACT 741
| || || ||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 618 GTGAAGCTAATGAGATTACTTATGGACCGGTTTTCAATAGAATGTGTAAGTCAGGGAACA 677
Query 742 CTGCTTTGGCTTTGGATTTGTTTAGAAAGATGGAAGAAAGAAATATCAAAGCTAGTGTTG 801
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 678 CTGCTTTGGCTTTGGATTTGCTTAGAAAGATGGAAGAAAGAAGTATCAAAGCTAGTGTAG 737
Query 802 TTCAGTATAGTATTGTTATTGATAGTCTTTGTAAAGATGGGAGCTTTGACGATGCGCTTA 861
|||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct 738 TTCAGTATAGTATTGTTATTGATAGTCTTTGTAAAGATGGGAACCTCGATGATGCGCTTA 797
Query 862 GCCTTTTCAATGAGATGGAGATGAAAGGGATTAAAGCTGATGTTGTTACGTATAGTTCTC 921
| ||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||
Sbjct 798 GTCTTTTTAATGAGATGGAGATGAAAGGGATCAAAGCAGATGTTGTTGCCTACAGTTCTA 857
Query 922 TTATAGGAGGTCTTTGTAACGACGGTAAATGGGATGATGGTGCAAAGATGTTGAGGGAGA 981
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 858 TTATAGGAGGTCTTTGTAACGACGGTAGATGGGATGATGGTGCAAAGATGTTGAGGGAGA 917
Query 982 TGATTGGAAGGAATATCATTCCC-GATGTTGTCACATTTAGTGCTTTGATTGATGTTTTT 1040
|||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 918 TGATCGGAAGGAATATTA-TCCCTAATGTTGTCACATTTAGTGCTTTGATTGATGTTTTT 976
Query 1041 GTGAAAGAGGGGAAGCTTCTAGAGGCTAAAGAGTTGTACAATGAGATGATCACAAGAGGT 1100
|||||||||||||||||| |||||||||| |||||||||||||| ||| || || |||||
Sbjct 977 GTGAAAGAGGGGAAGCTTTTAGAGGCTAAGGAGTTGTACAATGAAATGGTCGCACGAGGT 1036
Query 1101 ATAGCTCCTGACACCATTACATATAATTCATTAATTGATGGGTTTTGTAAGGAGAAT-TG 1159
|| |||||||||||||||||||||| ||| || |||||||||||||| ||||||||| |
Sbjct 1037 ATCGCTCCTGACACCATTACATATAGTTCCTTGATTGATGGGTTTTGCAAGGAGAATCGG 1096
Query 1160 CTTACATGAGGCTAATCAGATGTTTGATCTGATGGTTAGCAAAGGG-TGCGAACCTGACA 1218
| || ||||||||||||||||| ||||||||||||||| ||||| | |||||| | |
Sbjct 1097 C-TAGGCGAGGCTAATCAGATGTTGGATCTGATGGTTAGC-AAGGGACGTGAACCTAATA 1154
Query 1219 TCGTGACTTATAGTATTCTCATAAATAGCTACTGCAAAGCTAAGAGAGTTGATGATGGTA 1278
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1155 TCGTGACTTATAGTATTCTCATAAATAGTTACTGCAAAGCTAAGAGAGTTGATAATGGTA 1214
Query 1279 TGAGACTTTTTC-GTGAGATTTCTTCGAAAGGATTGATTCCTAATACAATCACTTATAAC 1337
|||||| ||||| ||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 1215 TGAGAC-TTTTCTGTGAGATTTCTTCGAAAGGATTGGTTGCTGATACAGTCACTTATAAC 1273
Query 1338 ACTCTTGTCCTAGGGTTTTGTCAATCGGGAAAACTTAACGCCGCCAAAGAACTCTTCCAA 1397
|||||||||| ||||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 1274 ACTCTTGTCCAAGGGTTTTGTCAATCGGGAAAACTTAATGTTGCTAAAGAACTATTCCAA 1333
Query 1398 GAGATGGTTTCTCGTGGTGTGCCACCAAGTGTTGTAACTTATGGTATTTTGCTGGATGGT 1457
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1334 GAGATGGTTTCTCGTGGTGTGCCACCAAGTGTTGTAACTTATGGCATTTTGCTGGATGGT 1393
Query 1458 TTGTGTGACAATGGTGAACTA-AATAAAGCATTGGAGATATTTGAGAAAATGCAGAAGAG 1516
|||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1394 TTGTGTGACAATGGAGAACTACAA-AAAGCATTGGAGATATTTGAAAAAATGCAGAAGAG 1452
Query 1517 TAGGATGACT-CTTGGTATTGGTATCTATAATATCATCATTCACGGGATGTGCAATGCTA 1575
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1453 TAGGATGA-TCCTTGGTATTGGCATCTATAATATCATCATTCACGGGATGTGCAATGCTA 1511
Query 1576 GTAAGGTCGATGATGCTTGGAGTTTATTCTGTAGCCTCTCTGACAAAGGAGTGAAACCTG 1635
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1512 GTAAGGTCGATGATGCGTGGAGTTTGTTCTGTAGCCTCTCTGTCAAAGGAGTGAAACCTG 1571
Query 1636 ATGTCGTGACATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCTGAAG 1695
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 ATGTCTTGACATACAATGTAATGATTGGAGGACTATGTAAGAAAGGCTCGTTGTCTGAAG 1631
Query 1696 CCGATATGCTGTTTAGAAAAATGAAGGAGGATGGGTGTACTCCG-GATGATTTTACGTAC 1754
|||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||
Sbjct 1632 CCGATATGCTGTTTAGGAAAATGAAGGAGGATGGGTGTGCTCCGAG-TGATTGTACGTAC 1690
Query 1755 AACATTCTTATCAGGGCACATCTTGGAGGTAGTGGTCTAATCTCTTCAGTTGAACTCATA 1814
|| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1691 AATATACTTATCAGGGCACATCTCGGAGGTAGTGGAGTAATCTCTTCAGTTGAACTCATC 1750
Query 1815 GAAGAAATGAAGGTGTGTGGGTTCTCTGCAGATTCTTCCACCATAAAGATGGTTATTGAT 1874
|||||||||||| || |||||||| |||||||| ||||||| |||||||||||| ||| |
Sbjct 1751 GAAGAAATGAAGATGCGTGGGTTCGCTGCAGATGCTTCCACTATAAAGATGGTTGTTGTT 1810
Query 1875 ATGTTATCAGATCGTAGATTGGATAAAAGCTTTTTGGATATGCTTTCTTGATTGTCTAAT 1934
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1811 ATGTTATCAGATGGTAGATTGGATAAAACCTTTTTGGATATGCTTTCTTGATTGTCTAAT 1870
Query 1935 CTGATCTACAAGAGATAAAGAAAATATTTTTGTTTGTAATTCCAAATCA-CTAAAATATT 1993
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1871 CTGAAATACAAGAGATAAATCCAATATTTTTGTTTGTAATTCCAAATCAACTAAA-TATT 1929
Query 1994 GTACCAAGCTT 2004
|||||||||||
Sbjct 1930 GTACCAAGCTT 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5