BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22480.2
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479767 jgi|Araly1|479767|fgenesh2_kg.3__2468__AT3G22480.2 898 0.0
> Ahg479767 jgi|Araly1|479767|fgenesh2_kg.3__2468__AT3G22480.2
Length=588
Score = 898 bits (486), Expect = 0.0
Identities = 558/592 (94%), Gaps = 7/592 (1%)
Strand=Plus/Plus
Query 13 TCTTCCTCGTGTGTGGATTCGTTTCTGAAAGATCGAAGTAATGGCCAGCAAATCTGGAAG 72
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 TCTTCCTCGTGTGTGGATTCGTTTCTAAAAGATCGAAGCAATGGCCAGCAAATCTGGAAG 60
Query 73 CGGTGGCCTAAGAGAACCGCCGAATGAGCAAGCTGTTTTGAACATGTATGAAGGCAAGAG 132
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CGGTGGTCTAAGAGAACCGCCGAATGAGCAAGCTGTTTTGAACATGTATGAAGCCAAGAG 120
Query 133 ATCAGAGCTAAGCCAAATCTACTCCAACATAACCGACCTCGAGATGCAAGTGAGCGAACA 192
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 121 ATCAGAGCTTAGCCAAATCTACTCCAACATAACTGAACTCGAGATGCAAGTGAGCGAACA 180
Query 193 TTCTCTGGTCATTAACGCCATTCAGCCTCTCGACCAATCGAGGAAATGCTTCCGCATGAT 252
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 TTCTCTGGTCATTAACGCCATTCAGCCTCTTGACCAATCGAGGAAATGCTTTCGCATGAT 240
Query 253 AGGAGGCGTTCTTGTCGAAAGAACCATCAAAGAGGTACTACCAGCTGTCCAACGTAACAA 312
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AGGAGGCGTTCTTGTCGAGAGAACCATCAAAGAGGTACTCCCAGCTGTCCAACGTAACAA 300
Query 313 GGACGGACTTGAAGAGGTTGTGAGGAAGCTATACGAGACATTGGAGAAAAAGAAGAAAGA 372
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GGAAGGGCTTGAAGAGGTTGTGAGGAAGCTATACGAGACATTGGAGAAGAAGAAGAAAGA 360
Query 373 TCTTACAGAGTTTGAAGCTAAGTATAAGATCAGGATAACGAAACAAGAAGATAACAAGGA 432
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 361 TCTTACAGAGTTTGAAGCTATGTATAAGATCAGGATAAGGAAACAAGACGATAACAAGGA 420
Query 433 AGGAGGTAACAAGAAGGAAGGTAATGCTCAAGGTGTTCTTGTTGGAGCTGCCAGTTCAAG 492
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 421 AGAAGGGAACAAGAAGGAAGGTAATGCTCAAGGTGTTCTTGTCGGAGCTGCCAGTTCGAG 480
Query 493 CCAGTAAAACTCTAT-ATTTGGCAGTTT-GTTTTACTGTTGTATCTCTTTTTTGGATC-T 549
||||||||||||| | ||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct 481 CCAGTAAAACTCTGTTATT-GGC-GTTTTGTTTTACTGTTGTATCTCTTTTTTGGATCGT 538
Query 550 TATGGTTAAAAGCCGTAAACTTTGCTGGAAAAAATCAACATGTTTTGAATGT 601
| |||||||||||||| | |||| |||| |||| |||| |||||||||||||
Sbjct 539 T-TGGTTAAAAGCCGTGACCTTTTCTGGGAAAA-TCAAGATGTTTTGAATGT 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5