BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22490.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413 1147 0.0
Ahg930239 jgi|Araly1|930239|scaffold_302696.1 741 0.0
> Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413
Length=789
Score = 1147 bits (621), Expect = 0.0
Identities = 735/791 (93%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 106 ATGAGTCAAGAAGAACAACCAAAGCGGCCACAAGAGCCAGTCACTTACGGTGACGTTTTT 165
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 ATGAGTCAAGAAGACCAACCAAAGCGGCCACAAGAGCCAGTCAAATACGGCGACGTTTTT 60
Query 166 GAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGCGCCGGAGGATGCAAACATGATGCAA 225
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGCGCCTGAGGATGCAAACATGATGCAA 120
Query 226 GCAGCGGAGACACGTGTGTTTGGCCACACTCAGAAAGGCGGTGCAGCGGCAGTCATGCAG 285
|| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 121 GCCGCGGAGACACGGGTGTTTGGCCACACTCAAAAAGGCGGTGCAGCTGCCGTCATGCAG 180
Query 286 TCTGCAGCCACTGCTAATAAACGCGGTGGCTTTGTCCATCCAGGTGACACAACTGATCTC 345
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 181 TCTGCAGCCACTGCCAACAAACGCGGTGGCTTTGTCCAACCAGGTGACACAACTGACCTG 240
Query 346 GCCGCTGAACGAGGCGTCACAGTGGCGCAAACTGACGTCCCTGGTGCACGTGTCACAACA 405
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGCCGAACGAGGTGTCACGGTGGCGCAAACTGACGTCCCTGGTGCACGTGTCACAACA 300
Query 406 GAATTCGTCGGTGGACAGGTCGTTGGACAATACGTCGAGCCTAGGCCAGTGGCGACTGCG 465
||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct 301 GAATTCGTCGGTGGACAGGTCGTTGGACAATACGTTGAGCCGAGACCGGTGGCTACTGCT 360
Query 466 GCAGCTATGGAAGCAGAAGTTGTGGGTTTGAGTTTACAAAGTGCAATAACGATTGGAGAA 525
||||||| ||||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct 361 GCAGCTACGGAAGCAGAAGCGGTGGGATTGAGTTTGCAAAGTGCGATCACAATTGGAGAA 420
Query 526 GCATTGGAAGCGACTGTGCAAACCGCTGGAAACAAACCGGTGGATCAAAGCGACGCAGCA 585
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GCATTGGAAGCAACTGTGCAAACCGCTGGAAACAAACCGGTAGATCAAAGCGACGCAGCA 480
Query 586 GCGATTCAAGCGGCAGAGGTTAGAGCTTGTGGCACTAATGTGATTGCTCCTGGTGGAATC 645
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 GCGATTCAAGCGGCTGAGGTTAGAGCTTCTGGCACTAATGTGATTGCTCCTGGTGGAATC 540
Query 646 GCCGCTTCTGCTCAATCAGCAGCAAATCACAACGCTACCATAGACCGTGATGAGGATAAA 705
|| ||||| |||||||| ||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 541 GCTGCTTCAGCTCAATCCGCAGCGAATCACAATGCTACCGTAGACCGTGATGAGGATAAA 600
Query 706 ATCAAGCTCATTGATGTTTTGGCGGGTGCGACCGGG-AAGTTAGCCGCAGATAAAGCTGT 764
|||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||
Sbjct 601 ATCAAGCTCATTGATGTTTTGGCGGGTGCGAC-GGGTAAGTTAACCGCTGATAAAGCTGT 659
Query 765 GACCAGGCAGGACGCAGAGGGAGTGGTGAGCGCTGAGCTGAGGAACAATCCTAATTTGTC 824
|| |||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 660 AACGAGGCAGGACGCAGAGGGAGTGGTGGGCGCTGAGCTGAGGAACAACCCTAATCTGTC 719
Query 825 TACTCA-CCCTGGTGGTGTAGCGGCTTCTATTACTGCCGCCGCTAGGCTTAACGAGAGAG 883
|||||| ||| ||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 720 TACTCATCCC-GGTGGTGTATCGGCTTCTATTACCGCAGCCGCTAGGCTTAACGAGAGAG 778
Query 884 CTGATATATGA 894
|||||||||||
Sbjct 779 CTGATATATGA 789
> Ahg930239 jgi|Araly1|930239|scaffold_302696.1
Length=813
Score = 741 bits (401), Expect = 0.0
Identities = 686/820 (84%), Gaps = 34/820 (4%)
Strand=Plus/Plus
Query 82 AACATAACATAACAAAACAGAGAGATGAGTCAAGAAGAACAACCAAAGCGGCC-ACAAGA 140
|||||||| ||||||||| ||||||||| |||| || ||||||| | |||| | ||||
Sbjct 1 AACATAACTTAACAAAAC--AGAGATGAGCCAAG-AG--CAACCAAGGAGGCCTA-AAGA 54
Query 141 GCCAGTCACTTACGGTGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGC 200
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 55 GCCAGTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTAGCTGATAAGCCCATAGC 114
Query 201 GCCGGAGGATGCAAACATGATGCAAGCAGCGGAGACACGTGTGTTTGGCCACACTCAGAA 260
|| ||||||||||| ||||||||| | |||||||||| |||||| ||||| ||||||||
Sbjct 115 ACCCGAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAA 174
Query 261 AGGCGGTGCAGCGGCAGTCATGCAGTCTGCAGCCACTGCTAATAAACGCGGTGGCTTTGT 320
||||||| |||| || |||||||| ||||||||||| | |||| |||||||||||||||
Sbjct 175 AGGCGGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGT 234
Query 321 CCATCCAGGTGACACAACTGATCTCGCCGCTGAACGAGGCGTCACAGTGGCGCAAACTGA 380
|||||||||||||| |||||| || | |||||||||||||| |||||||| |||||| |
Sbjct 235 CCATCCAGGTGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAAC--A 292
Query 381 CGTCCCTGGTGC-ACGTGTCACAACAGAATTCGTCGGTGGACAGGTCGTTGGACAATACG 439
||||| | | | || |||||||| |||||||||| ||||||||| || |||||| | |
Sbjct 293 -GTCCCAGCTACAAC-CGTCACAACCGAATTCGTCGCTGGACAGGTGGTCGGACAACATG 350
Query 440 TCGAGCCTAGGC-CAGTGGCGACTGCGGCAGCTATGGAAGCAGAAGTTGTGGGTTTGAGT 498
| || || |||| || | | | || ||||| | || | | || | | | ||| |
Sbjct 351 TTGAACCGAGGCGCA-T--AGTC-GCTGCAGC-ACGG-A-CGGACGAAGAAGCTTT--G- 400
Query 499 TTACAAAGTGCAATAACGATTGGAGAAGCATTGGAAGCGACTGTGCAA-ACCGCTGGAAA 557
|||||| | |||||||||||||||||||| |||||||| ||| || |||||||||||
Sbjct 401 ---CAAAGTACTATAACGATTGGAGAAGCATTAGAAGCGACCGTG-AAGACCGCTGGAAA 456
Query 558 CAAACCGGTGGATCAAAGCGACGCAGCAGCGATTCAAGCGGCAGAGGTTAGAGCTTGTGG 617
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 457 CAAACCGGTGGATCAAAGCGACGCAGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGG 516
Query 618 CACTAATGTGATTGCTCCTGGT-GGAATCGCCGCTTCTGCTCAATCAGCAGCAAATCACA 676
|| || || ||||||| | | ||| |||||||||| |||||||| ||||| ||||||
Sbjct 517 TACCAACGTCATTGCTC-TAGCAGGAGTCGCCGCTTCAGCTCAATCCGCAGCGGATCACA 575
Query 677 ACGCTACCATAGACCGTGATGAG-GATAAAATCAAGCTCATTGATGTTTTGGCGGGTGCG 735
|||||||| |||| ||||| ||| | ||||||||||| | ||||||||| ||||||||
Sbjct 576 ACGCTACCGTAGATCGTGACGAGAGG-AAAATCAAGCTTAGTGATGTTTTAACGGGTGCG 634
Query 736 ACCGGGAAGTTAGCCGCAGATAAAGCTGTGACCAGGCAGGACGCAGAGGGAGTGGTGAGC 795
| ||||||||| | ||||||| ||||||||| ||| |||| ||||||||||||||||||
Sbjct 635 GCGGGGAAGTTATCGGCAGATAGAGCTGTGACGAGGGAGGATGCAGAGGGAGTGGTGAGC 694
Query 796 GCTGAGCTGAGGAACAATCCTAATTTGTCTACTCACCCTGGTGGTGTAGCGGCTTCTATT 855
|| ||| ||||||| || ||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 695 GCCGAGATGAGGAATAACCCTAAATTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTT 754
Query 856 ACTGCCGCCGCTAGGCTTAACGAGAGAG-CTGATATATGA 894
|| | ||| ||||||||||||||||||| | |||||||||
Sbjct 755 ACCGTCGCTGCTAGGCTTAACGAGAGAGTC-GATATATGA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5