BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22500.1 Length=1108 Score E Sequences producing significant alignments: (Bits) Value Ahg930239 jgi|Araly1|930239|scaffold_302696.1 1258 0.0 Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413 704 0.0 > Ahg930239 jgi|Araly1|930239|scaffold_302696.1 Length=813 Score = 1258 bits (681), Expect = 0.0 Identities = 771/815 (95%), Gaps = 3/815 (0%) Strand=Plus/Plus Query 20 AACATTAACGTAACAAAACAAAGATGAGCCAAGAGCAACCAAGGAGGCC-AAGAGAGCCA 78 |||| |||| |||||||||| |||||||||||||||||||||||||||| || ||||||| Sbjct 1 AACA-TAACTTAACAAAACAGAGATGAGCCAAGAGCAACCAAGGAGGCCTAA-AGAGCCA 58 Query 79 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCCATAGCACCT 138 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 59 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTAGCTGATAAGCCCATAGCACCC 118 Query 139 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 178 Query 199 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 238 Query 259 CCAGATGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACGGTCCCT 318 |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 CCAGGTGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACAGTCCCA 298 Query 319 GCTGCAACTGTCACAACCGAATTCGTCGGTGGACAGGTCGTTGGACAACACGTTGAACCG 378 ||| |||| ||||||||||||||||||| ||||||||| || |||||||| ||||||||| Sbjct 299 GCTACAACCGTCACAACCGAATTCGTCGCTGGACAGGTGGTCGGACAACATGTTGAACCG 358 Query 379 AGGCGTGTAGTCGCTGCTGCGCGTACGGACGAAGAAGCTTTGCAAAGTACAATAACGATT 438 ||||| |||||||||| || || |||||||||||||||||||||||||| ||||||||| Sbjct 359 AGGCGCATAGTCGCTGCAGCACGGACGGACGAAGAAGCTTTGCAAAGTACTATAACGATT 418 Query 439 GGAGAAGCACTGGAAGCAACTGTGAAGACAGCTGGAAACAAACCTGTGGATCAAAGCGAC 498 ||||||||| | ||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct 419 GGAGAAGCATTAGAAGCGACCGTGAAGACCGCTGGAAACAAACCGGTGGATCAAAGCGAC 478 Query 499 GCCGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCT 558 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GCAGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCA 538 Query 559 GGAGTCGCCGCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 618 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 539 GGAGTCGCCGCTTCAGCTCAATCCGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 598 Query 619 AGGAAAATCAAGCTTCGTGATGTTTTGACGGGTGCAGCAGGGAAGTTATCGGCAGACAGA 678 ||||||||||||||| |||||||||| |||||||| || ||||||||||||||||| ||| Sbjct 599 AGGAAAATCAAGCTTAGTGATGTTTTAACGGGTGCGGCGGGGAAGTTATCGGCAGATAGA 658 Query 679 GCTGTGACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAA 738 |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 659 GCTGTGACGAGGGAGGATGCAGAGGGAGTGGTGAGCGCCGAGATGAGGAATAACCCTAAA 718 Query 739 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 778 Query 799 AGAGTTGATATATGACAAGACAAATCCGGCGAGAG 833 ||||| ||||||||||| || |||||| || |||| Sbjct 779 AGAGTCGATATATGACATGAAAAATCCCGCAAGAG 813 > Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413 Length=789 Score = 704 bits (381), Expect = 0.0 Identities = 663/793 (84%), Gaps = 43/793 (5%) Strand=Plus/Plus Query 50 AAGAGCAACCAAGGAGGCCA-AGAGAGCCAGTCAAATACGGGGACGTTTTTGAAGTCTCC 108 |||| ||||||| | ||||| | |||||||||||||||||| |||||||||||||||||| Sbjct 11 AAGACCAACCAAAGCGGCCACA-AGAGCCAGTCAAATACGGCGACGTTTTTGAAGTCTCC 69 Query 109 GGTGAACTCGCTGATAAGCCCATAGCACCTGAGGATGCAAAGATGATGCAATCCGCGGAG 168 |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||| Sbjct 70 GGTGAACTCGCTGATAAGCCTATAGCGCCTGAGGATGCAAACATGATGCAAGCCGCGGAG 129 Query 169 ACACATGTGTTCGGCCATACTCAGAAAGGCGGTCCAGCTGCGGTCATGCAATCTGCAGCC 228 |||| ||||| ||||| ||||| ||||||||| ||||||| |||||||| ||||||||| Sbjct 130 ACACGGGTGTTTGGCCACACTCAAAAAGGCGGTGCAGCTGCCGTCATGCAGTCTGCAGCC 189 Query 229 ACCACCAATATACGCGGTGGCTTTGTCCATCCAGATGACAAAACTGAGCTTGTCGCTGAA 288 || |||| | |||||||||||||||||| |||| ||||| |||||| || | ||| ||| Sbjct 190 ACTGCCAACAAACGCGGTGGCTTTGTCCAACCAGGTGACACAACTGACCTGGCCGCCGAA 249 Query 289 CGAGGCGCCACAGTGGAGCAAAC-G--GTCCCTGCTGCAAC-TGTCACAACCGAATTCGT 344 ||||| | ||| |||| |||||| | ||||||| |||| | ||||||||| |||||||| Sbjct 250 CGAGGTGTCACGGTGGCGCAAACTGACGTCCCTGGTGCA-CGTGTCACAACAGAATTCGT 308 Query 345 CGGTGGACAGGTCGTTGGACAACACGTTGAACCGAGGC-GTGTAG-TCGCTGCTGC-GCG 401 |||||||||||||||||||||| ||||||| ||||| | | || | | ||||||| || Sbjct 309 CGGTGGACAGGTCGTTGGACAATACGTTGAGCCGAGACCG-GTGGCTA-CTGCTGCAGC- 365 Query 402 TACGGACGAAGAAGC--T----TTG------CAAAGTACAATAACGATTGGAGAAGCACT 449 |||||| | |||||| | ||| |||||| | || || |||||||||||| | Sbjct 366 TACGGAAGCAGAAGCGGTGGGATTGAGTTTGCAAAGTGCGATCACAATTGGAGAAGCATT 425 Query 450 GGAAGCAACTGTG-AAGACAGCTGGAAACAAACCTGTGGATCAAAGCGACGCCGCAGCGA 508 ||||||||||||| || || |||||||||||||| || |||||||||||||| ||||||| Sbjct 426 GGAAGCAACTGTGCAA-ACCGCTGGAAACAAACCGGTAGATCAAAGCGACGCAGCAGCGA 484 Query 509 TTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTC-TAGCTGGAGTCGCC 567 |||||||||| ||| | |||||||| || || || || ||||||| | | |||| |||| Sbjct 485 TTCAAGCGGCTGAGGTTAGAGCTTCTGGCACTAATGTGATTGCTCCTGG-TGGAATCGCT 543 Query 568 GCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG-AGGAAAAT 626 |||||||||||||| |||||| ||||||| ||||||||||| ||||| ||| | ||||| Sbjct 544 GCTTCAGCTCAATCCGCAGCGAATCACAATGCTACCGTAGACCGTGATGAGGAT-AAAAT 602 Query 627 CAAGCTTCGT-GATGTTTTGACGGGTGC-AGCAGGG-AAGTTATCGGCAGACAGAGCTGT 683 |||||| | | ||||||||| ||||||| | | ||| |||||| | || || | |||||| Sbjct 603 CAAGCT-CATTGATGTTTTGGCGGGTGCGA-C-GGGTAAGTTAACCGCTGATAAAGCTGT 659 Query 684 GACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAAT-TGT 742 |||||| | || || |||||||||||| |||| ||| ||||||| |||||||| | ||| Sbjct 660 AACGAGGCAGGACGCAGAGGGAGTGGTGGGCGCTGAGCTGAGGAACAACCCTAA-TCTGT 718 Query 743 GTACTCA-CCCTGGTGGTGTAGCGGCTTCTCTTACCGTC-GCTGCTAGGCTTAACGAGAG 800 |||||| ||| ||||||||| |||||||| |||||| | || ||||||||||||||||| Sbjct 719 CTACTCATCCC-GGTGGTGTATCGGCTTCTATTACCG-CAGCCGCTAGGCTTAACGAGAG 776 Query 801 AGTTGATATATGA 813 || |||||||||| Sbjct 777 AGCTGATATATGA 789 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41287119111 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5