BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22500.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930239 jgi|Araly1|930239|scaffold_302696.1 1258 0.0
Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413 704 0.0
> Ahg930239 jgi|Araly1|930239|scaffold_302696.1
Length=813
Score = 1258 bits (681), Expect = 0.0
Identities = 771/815 (95%), Gaps = 3/815 (0%)
Strand=Plus/Plus
Query 20 AACATTAACGTAACAAAACAAAGATGAGCCAAGAGCAACCAAGGAGGCC-AAGAGAGCCA 78
|||| |||| |||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 1 AACA-TAACTTAACAAAACAGAGATGAGCCAAGAGCAACCAAGGAGGCCTAA-AGAGCCA 58
Query 79 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTCGCTGATAAGCCCATAGCACCT 138
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 59 GTCAAATACGGGGACGTTTTTGAAGTCTCCGGTGAACTAGCTGATAAGCCCATAGCACCC 118
Query 139 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAGGATGCAAAGATGATGCAATCCGCGGAGACACATGTGTTCGGCCATACTCAGAAAGGC 178
Query 199 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTCCAGCTGCGGTCATGCAATCTGCAGCCACCACCAATATACGCGGTGGCTTTGTCCAT 238
Query 259 CCAGATGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACGGTCCCT 318
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 CCAGGTGACAAAACTGAGCTTGTCGCTGAACGAGGCGCCACAGTGGAGCAAACAGTCCCA 298
Query 319 GCTGCAACTGTCACAACCGAATTCGTCGGTGGACAGGTCGTTGGACAACACGTTGAACCG 378
||| |||| ||||||||||||||||||| ||||||||| || |||||||| |||||||||
Sbjct 299 GCTACAACCGTCACAACCGAATTCGTCGCTGGACAGGTGGTCGGACAACATGTTGAACCG 358
Query 379 AGGCGTGTAGTCGCTGCTGCGCGTACGGACGAAGAAGCTTTGCAAAGTACAATAACGATT 438
||||| |||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 359 AGGCGCATAGTCGCTGCAGCACGGACGGACGAAGAAGCTTTGCAAAGTACTATAACGATT 418
Query 439 GGAGAAGCACTGGAAGCAACTGTGAAGACAGCTGGAAACAAACCTGTGGATCAAAGCGAC 498
||||||||| | ||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 419 GGAGAAGCATTAGAAGCGACCGTGAAGACCGCTGGAAACAAACCGGTGGATCAAAGCGAC 478
Query 499 GCCGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCT 558
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCAGCAGCGATTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTCTAGCA 538
Query 559 GGAGTCGCCGCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 618
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 GGAGTCGCCGCTTCAGCTCAATCCGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG 598
Query 619 AGGAAAATCAAGCTTCGTGATGTTTTGACGGGTGCAGCAGGGAAGTTATCGGCAGACAGA 678
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 599 AGGAAAATCAAGCTTAGTGATGTTTTAACGGGTGCGGCGGGGAAGTTATCGGCAGATAGA 658
Query 679 GCTGTGACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAA 738
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 659 GCTGTGACGAGGGAGGATGCAGAGGGAGTGGTGAGCGCCGAGATGAGGAATAACCCTAAA 718
Query 739 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGTGTACTCACCCTGGTGGTGTAGCGGCTTCTCTTACCGTCGCTGCTAGGCTTAACGAG 778
Query 799 AGAGTTGATATATGACAAGACAAATCCGGCGAGAG 833
||||| ||||||||||| || |||||| || ||||
Sbjct 779 AGAGTCGATATATGACATGAAAAATCCCGCAAGAG 813
> Ahg905285 jgi|Araly1|905285|Al_scaffold_0003_2413
Length=789
Score = 704 bits (381), Expect = 0.0
Identities = 663/793 (84%), Gaps = 43/793 (5%)
Strand=Plus/Plus
Query 50 AAGAGCAACCAAGGAGGCCA-AGAGAGCCAGTCAAATACGGGGACGTTTTTGAAGTCTCC 108
|||| ||||||| | ||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 11 AAGACCAACCAAAGCGGCCACA-AGAGCCAGTCAAATACGGCGACGTTTTTGAAGTCTCC 69
Query 109 GGTGAACTCGCTGATAAGCCCATAGCACCTGAGGATGCAAAGATGATGCAATCCGCGGAG 168
|||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||
Sbjct 70 GGTGAACTCGCTGATAAGCCTATAGCGCCTGAGGATGCAAACATGATGCAAGCCGCGGAG 129
Query 169 ACACATGTGTTCGGCCATACTCAGAAAGGCGGTCCAGCTGCGGTCATGCAATCTGCAGCC 228
|||| ||||| ||||| ||||| ||||||||| ||||||| |||||||| |||||||||
Sbjct 130 ACACGGGTGTTTGGCCACACTCAAAAAGGCGGTGCAGCTGCCGTCATGCAGTCTGCAGCC 189
Query 229 ACCACCAATATACGCGGTGGCTTTGTCCATCCAGATGACAAAACTGAGCTTGTCGCTGAA 288
|| |||| | |||||||||||||||||| |||| ||||| |||||| || | ||| |||
Sbjct 190 ACTGCCAACAAACGCGGTGGCTTTGTCCAACCAGGTGACACAACTGACCTGGCCGCCGAA 249
Query 289 CGAGGCGCCACAGTGGAGCAAAC-G--GTCCCTGCTGCAAC-TGTCACAACCGAATTCGT 344
||||| | ||| |||| |||||| | ||||||| |||| | ||||||||| ||||||||
Sbjct 250 CGAGGTGTCACGGTGGCGCAAACTGACGTCCCTGGTGCA-CGTGTCACAACAGAATTCGT 308
Query 345 CGGTGGACAGGTCGTTGGACAACACGTTGAACCGAGGC-GTGTAG-TCGCTGCTGC-GCG 401
|||||||||||||||||||||| ||||||| ||||| | | || | | ||||||| ||
Sbjct 309 CGGTGGACAGGTCGTTGGACAATACGTTGAGCCGAGACCG-GTGGCTA-CTGCTGCAGC- 365
Query 402 TACGGACGAAGAAGC--T----TTG------CAAAGTACAATAACGATTGGAGAAGCACT 449
|||||| | |||||| | ||| |||||| | || || |||||||||||| |
Sbjct 366 TACGGAAGCAGAAGCGGTGGGATTGAGTTTGCAAAGTGCGATCACAATTGGAGAAGCATT 425
Query 450 GGAAGCAACTGTG-AAGACAGCTGGAAACAAACCTGTGGATCAAAGCGACGCCGCAGCGA 508
||||||||||||| || || |||||||||||||| || |||||||||||||| |||||||
Sbjct 426 GGAAGCAACTGTGCAA-ACCGCTGGAAACAAACCGGTAGATCAAAGCGACGCAGCAGCGA 484
Query 509 TTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTC-TAGCTGGAGTCGCC 567
|||||||||| ||| | |||||||| || || || || ||||||| | | |||| ||||
Sbjct 485 TTCAAGCGGCTGAGGTTAGAGCTTCTGGCACTAATGTGATTGCTCCTGG-TGGAATCGCT 543
Query 568 GCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAG-AGGAAAAT 626
|||||||||||||| |||||| ||||||| ||||||||||| ||||| ||| | |||||
Sbjct 544 GCTTCAGCTCAATCCGCAGCGAATCACAATGCTACCGTAGACCGTGATGAGGAT-AAAAT 602
Query 627 CAAGCTTCGT-GATGTTTTGACGGGTGC-AGCAGGG-AAGTTATCGGCAGACAGAGCTGT 683
|||||| | | ||||||||| ||||||| | | ||| |||||| | || || | ||||||
Sbjct 603 CAAGCT-CATTGATGTTTTGGCGGGTGCGA-C-GGGTAAGTTAACCGCTGATAAAGCTGT 659
Query 684 GACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAAT-TGT 742
|||||| | || || |||||||||||| |||| ||| ||||||| |||||||| | |||
Sbjct 660 AACGAGGCAGGACGCAGAGGGAGTGGTGGGCGCTGAGCTGAGGAACAACCCTAA-TCTGT 718
Query 743 GTACTCA-CCCTGGTGGTGTAGCGGCTTCTCTTACCGTC-GCTGCTAGGCTTAACGAGAG 800
|||||| ||| ||||||||| |||||||| |||||| | || |||||||||||||||||
Sbjct 719 CTACTCATCCC-GGTGGTGTATCGGCTTCTATTACCG-CAGCCGCTAGGCTTAACGAGAG 776
Query 801 AGTTGATATATGA 813
|| ||||||||||
Sbjct 777 AGCTGATATATGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5