BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22510.1
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479770 jgi|Araly1|479770|fgenesh2_kg.3__2471__AT3G22510.1 867 0.0
> Ahg479770 jgi|Araly1|479770|fgenesh2_kg.3__2471__AT3G22510.1
Length=662
Score = 867 bits (469), Expect = 0.0
Identities = 620/688 (90%), Gaps = 30/688 (4%)
Strand=Plus/Plus
Query 11 CTCTGTGTTCCCATACACAAAATCTTCCAGCTTCTGTTTCTCCGTTTTGTTCAACGGAGT 70
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 CTCTGTGTTCCCATACACAAAATCTTCCAGCTTCTG-TTCTCCGTTTTGTTTAACGGAGT 59
Query 71 TACAAAGCGGAAGAA--C-CTTTGCCTTCGGCCTGAAAGACCAAAGATATGGGAACTGGT 127
||||| ||||||||| | |||| |||||||| |||||||||||||||||||||| |||
Sbjct 60 TACAAGGCGGAAGAACCCGCTTT--CTTCGGCCGGAAAGACCAAAGATATGGGAACCGGT 117
Query 128 GGAATAACGTCCAACGCTCACGTGGTCTCTC-CCACGTGGCATCACAAGCACGTGCCTCC 186
|||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||| |
Sbjct 118 GGAATAACGTTCAACGCTCACGTGGTCTC-CGACACATGGCATCACAAGCACGTGCCTTC 176
Query 187 TATGGATGACGACTCTGTTCTTCAAAGAGACATCGGAGAGCTTCTTTCACGGTGGGGCGG 246
| ||| ||||||||||||||||| ||||||||| ||||||||||||| || ||||||||
Sbjct 177 TGTGGCCGACGACTCTGTTCTTCAGAGAGACATCAGAGAGCTTCTTTCGCGTTGGGGCGG 236
Query 247 GCTTCAAATGGCCGTAAAGAACCAGTGGGGAGGCCATGATTCTCTCAAGAAATCTCAAGA 306
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 GCTTCAAATGGCCGTGAAGAACCAATGGGGAGGCCATGATTCTCTCAAGAAATCTCAAGA 296
Query 307 GCTAGCTCACAATCTTTTTCATCTCATCTCTCAATCAAATGTGATTACGGTGGAAGAAAT 366
|||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 297 GCTAGCTCACCATCTATTTCATCTCTTCTCTCAATCAAACGTGATTACGGTGGAAGAAAT 356
Query 367 AGAGAATTTGCTACATGAAAGCTTGCTTCTTTCTTTCAACACAGAGATTGAAGATGGCAG 426
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 357 AGAGAATTTGCTACATGAAAGCTTGCTTCTCTCTTTCAACACAGAGATCGAAGATGGCAG 416
Query 427 CATTGAAGAGGTAGCTGAACAATTGATGATACTCCATGAAGAACATTTACGTGGGACTCT 486
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 417 CATTGAAGAGGTAGCTGAACAATTGATGATACTCCATGAAGAACATTTGCGTGGGAGTCA 476
Query 487 TTAAGCAGTAGCTTGAACGATTTATATCATTTTTGGTGTATAATTAGATCAATGTAAGAT 546
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 477 TTAAGCAGTAGCTTGAACGATTTATTTCATTTTTGGTGTATAATTAGATCAATGT--GA- 533
Query 547 ACAAAGAATTGAAAATTGGGTGGACAACAAAATATTATTCATCAGAAATCATAGAATATA 606
| || ||| || |||| || ||| | ||||||||||| |||||||||||||
Sbjct 534 A-AA----TTG------GG-TGGAGAAGAAA-TGTTATTCATCAGTCATCATAGAATATA 580
Query 607 GGAATACGTATCAAAATCTATGTTTATTTGATGTAATCATTTTGTAGTTGTGATGAACAG 666
|||| | | || ||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 581 TGAAT-C--A--AAGATCTATGTTTATTTGATGTAATCATTT-GTATTTGTGATTAACAG 634
Query 667 TTTTTCCTAATGTAATTTCAAATTAACC 694
|||||||||||||||| ||| |||||||
Sbjct 635 TTTTTCCTAATGTAATCTCATATTAACC 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25542354390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5