BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22530.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479772 jgi|Araly1|479772|fgenesh2_kg.3__2473__AT3G22530.1 1386 0.0
Ahg887985 jgi|Araly1|887985|Al_scaffold_0862_2 789 0.0
Ahg904901 jgi|Araly1|904901|Al_scaffold_0003_2029 784 0.0
> Ahg479772 jgi|Araly1|479772|fgenesh2_kg.3__2473__AT3G22530.1
Length=1002
Score = 1386 bits (750), Expect = 0.0
Identities = 940/1027 (92%), Gaps = 31/1027 (3%)
Strand=Plus/Plus
Query 1 AGAGGGGTAGTTTGGTAAATTTTCAAATGCCCTTATCTCATTTCCGATCCTCCTTCTTCT 60
||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1 AGAGGGGTATTTTGGTAAATTAAGAAATGCCCTTATCTCATTTCCGATCCT-C--CTTCT 57
Query 61 TGCTACCGCCTTCGCACCCATTCAT-AAAAAAGGAAAGACGCAATCTTTTCTTGTCTCTT 119
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 58 TGGTGCCGCCTTCGCACCCATTCATAAAAAAAGGAAAGACGCAATCTTTTCTTGTCTCTT 117
Query 120 CCATTGCTTCAAATCCTCCTAATAAAGCTTTCCTCTTTCACTTTCTAATCTCTTTAATCC 179
||| ||| | | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 118 CCA----TTC---T--T-C--ATAAAGCTTTCCTCTTTCACTTTCTATTCTCTTTAATCC 165
Query 180 GTTTAAATCCAATC-CCAAATAC-AGATTTTGATTACAAAAATCTAACATTTTGCTGATT 237
|||||||||||||| | |||| | | |||| |||||||||| || |||||||||| ||||
Sbjct 166 GTTTAAATCCAATCTCAAAATCCAATATTTCGATTACAAAACTCCAACATTTTGCAGATT 225
Query 238 TGTGTTTTAGGGTTCTCTCGTGTTT-TTTATGATTTTGATTCCCGTAAAGATTCAATCAC 296
|||||| ||||||||| |||| ||| ||||||| |||||||||| | ||||||||||||
Sbjct 226 TGTGTTCTAGGGTTCTATCGTTTTTGTTTATGA-TTTGATTCCCATCAAGATTCAATCAG 284
Query 297 TTTTCTCATATCTCTTGTTACTGAATTTGATCCAATCGATCGATAAACCAAACCCAGAAG 356
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TTTTCTCATATCTCTTATTGCTGAATTTGATCCAATCGATCGATAAACCAAACCCAGAAG 344
Query 357 CTATGAGAGTGCACCCAATTCCCAGAAACATCAACAACACATTGATCCATCATCATCATC 416
|||||||||| |||||||||||||||||| |||||||||| |||||||||||||| | |
Sbjct 345 CTATGAGAGTCCACCCAATTCCCAGAAACCTCAACAACACTTTGATCCATCATCA-C--C 401
Query 417 ATAACCCGACCCGAGAACCCGGAAAGAATCTCCGACGATTACCACATATCTTCAACCGTG 476
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 402 ATAACCCGACCCGAGAACCCGGAAAGAATCTCCGGCGATTGCCACATATCTTCAACCGTG 461
Query 477 TTCTGGAGCTACCATTGAGGTCAGAAGCAGATGTAGCAGTGGAAGAGAGACACGACTGTT 536
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 462 TTCTGGAGCTGCCATTGAGGTCAGAGGCAGATGTAACAGTGGAAGAGAGACACGACTGTT 521
Query 537 TTCGATTTGTGGCGGAGACGGTAGGTCTCTGTAACGGCGATGGAGAAATGAGGGCTTATA 596
||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 522 TTCGATTCGTGGCGGAGACGGTAGGTCTTTGTGACGGTGATGGAGAAATGAGGGCTTATA 581
Query 597 TGGTTGAGATTCATCCTGGTATAACCAAGATCGTTGTGAGGACAAATGGGTCTTCTTCTC 656
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 582 TGGTTGAGATTCATCCGGGTATAACCAAGATCGTTGTTAGGACAAATGGGTCGTCTTCTC 641
Query 657 TTGGTTTGTCTTTAGACGAATTAGAGCTTGACGTGTGGCGTTTTAGGTTACCGGAATCAA 716
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 642 TTGGTTTGTCTTTAGACGAGTTAGAGCTTGACGTGTGGCGTTTTAGGCTACCGGAATCTA 701
Query 717 CTAGGCCTGAGCTTGTTACTGTTGCTTGTGTTGATGGTGATTTGATTGTTACTGTGCCTA 776
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 702 CTAGGCCTGAGCTTGTTACTGTGGCTTGTGTTGATGGAGATTTGATTGTTACTGTGCCTA 761
Query 777 AGAATGCTGAAGAAGAAGATGATGATGGTGGTGGTGGTGATTTTGGACAAGGTATTGGTA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 762 AGAATGCTGAAGAAGAAGATGATGATGATGGTGGTGGTGATTTTGGACAAGGTATGGGTA 821
Query 837 GTGGAAGGCTTGTGCTTGTTCAGTGAATCAAAGTAATGTCCTCTATGTAAC-ATG-AGAA 894
|||||||||| |||||||||||||||||||| || |||| || ||||||| ||| |||
Sbjct 822 GTGGAAGGCTAGTGCTTGTTCAGTGAATCAA-GTTATGTTCTTTATGTAATGATGGAGA- 879
Query 895 GAAGACTAATCTCTAATCTTCTTCGTTTCGTTGATATTGTGTAGCCTTCTGTTTTTGTTG 954
|||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 880 GAAGACAAAACTCTAATCTTCCTCGTTTCGTTGATATTGTGTAGCCTTCTGTTTTTCTTG 939
Query 955 TTGGCAATAAAAGAAAAGATTGAATCTTTGATGATCTCTTATTTTGTAAGATCAACAAGG 1014
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 940 TTGGCAATAAAAGAAA-GATTGAATCTTTGATC-TCTC--ATTTTGTAAGATCAAGAAGG 995
Query 1015 GTTGTTT 1021
||| |||
Sbjct 996 GTTATTT 1002
> Ahg887985 jgi|Araly1|887985|Al_scaffold_0862_2
Length=507
Score = 789 bits (427), Expect = 0.0
Identities = 481/507 (95%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 359 ATGAGAGTGCACCCAATTCCCAGAAACATCAACAACACATTGATCCATCATCATCATCAT 418
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGTCCACCCAATTCCCAGAAACCTCAACAACACTTTGATCCATCATCATCATCAT 60
Query 419 AACCCGACCCGAGAACCCGGAAAGAATCTCCGACGATTACCACATATCTTCAACCGTGTT 478
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AACCCGACCCGAGAACCCGGAAAGAATCTCCGGCGATTGCCACATATCTTCAACCGTGTT 120
Query 479 CTGGAGCTACCATTGAGGTCAGAAGCAGATGTAGCAGTGGAAGAGAGACACGACTGTTTT 538
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 121 CTGGAGCTGCCATTGAGGTCAGAGGCAGATGTAACAGTGGAAGAGAGACACGACTGTTTT 180
Query 539 CGATTTGTGGCGGAGACGGTAGGTCTCTGTAACGGCGATGGAGAAATGAGGGCTTATATG 598
||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 181 CGATTCGTGGCGGAGACGGTAGGTCTTTGTGGCGGTGATGGAGAAATGAGGGCTTATATG 240
Query 599 GTTGAGATTCATCCTGGTATAACCAAGATCGTTGTGAGGACAAATGGGTCTTCTTCTCTT 658
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 241 GTTGAGATTCATCCTGGTATAACCAAGATTGTTGTTAGGACAAATGGGTCGTCTTCTCTT 300
Query 659 GGTTTGTCTTTAGACGAATTAGAGCTTGACGTGTGGCGTTTTAGGTTACCGGAATCAACT 718
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 301 GGTTTGTCTTTAGACGAGTTAGAGCTTGACGTGTGGCGTTTTAGGCTACCGGAATCTACT 360
Query 719 AGGCCTGAGCTTGTTACTGTTGCTTGTGTTGATGGTGATTTGATTGTTACTGTGCCTAAG 778
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGGCCTGAGCTTGTTACTGTGGCTTGTGTTGATGGAGATTTGATTGTTACTGTGCCTAAG 420
Query 779 AATGCTGAAGAAGAAGATGATGATG--G-TGGTGGTGGTGATTTTGGACAAGGTATTGGT 835
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 421 AATGCTGAAGAAGAAGATGATGATGATGATGGTGGTGGTGATTTTGGACAAGGTATGGGT 480
Query 836 AGTGGAAGGCTTGTGCTTGTTCAGTGA 862
||||||||||| |||||||||||||||
Sbjct 481 AGTGGAAGGCTGGTGCTTGTTCAGTGA 507
> Ahg904901 jgi|Araly1|904901|Al_scaffold_0003_2029
Length=507
Score = 784 bits (424), Expect = 0.0
Identities = 481/508 (95%), Gaps = 5/508 (1%)
Strand=Plus/Plus
Query 359 ATGAGAGTGCACCCAATTCCCAGAAACATCAACAACACATTGATCCATCATCATCATCAT 418
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGTCCACCCAATTCCCAGAAACCTCAACAACACTTTGATCCATCATCATCATCAT 60
Query 419 AACCCGACCCGAGAACCCGGAAAGAATCTCCGACGATTACCACATATCTTCAACCGTGTT 478
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AACCCGACCCGAGAACCCGGAAAGAATCTCCGGCGATTGCCACATATCTTCAACCGTGTT 120
Query 479 CTGGAGCTACCATTGAGGTCAGAAGCAGATGTAGCAGTGGAAGAGAGACACGACTGTTTT 538
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 121 CTGGAGCTGCCATTGAGGTCAGAGGCAGATGTAACAGTGGAAGAGAGACACGACTGTTTT 180
Query 539 CGATTTGTGGCGGAGACGGTAGGTCTCTGTAACGGCGATGGAGAAATGAGGGCTTATATG 598
||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 181 CGATTCGTGGCGGAGACGGTAGGTCTTTGTGGCGGTGATGGAGAAATGAGGGCTTATATG 240
Query 599 GTTGAGATTCATCCTGGTATAACCAAGATCGTTGTGAGGACAAATGGGTCTTCTTCTCTT 658
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 241 GTTGAGATTCATCCTGGTATAACCAAGATTGTTGTTAGGACAAATGGGTCGTCTTCTCTT 300
Query 659 GGTTTGTCTTTAGACGAATTAGAGCTTGACGTGTGGCGTTTTAGGTTACCGGAATCAACT 718
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 301 GGTTTGTCTTTAGACGAGTTAGAGCTTGACGTGTGGCGTTTTAGGCTACCGGAATCTACT 360
Query 719 AGGCCTGAGCTTGTTACTGTTGCTTGTGTTGATGGTGATTTGATTGTTACTGTGCCTAAG 778
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGGCCTGAGCTTGTTACTGTGGCTTGTGTTGATGGAGATTTGATTGTTACTGTGCCTAAG 420
Query 779 AATGCTGAAGAAGAAGATGATGATG--G-TGGTGGTGGTGATTTTGGACAAGGTATTGGT 835
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 421 AATGCTGAAGAAGAAGATGATGATGATGATGGTGGTGGTGATTTTGGACAAGGTATGGGT 480
Query 836 AGTGGAAGGCTTG-TGCTTGTTCAGTGA 862
||||||||| ||| ||||||||||||||
Sbjct 481 AGTGGAAGG-TTGGTGCTTGTTCAGTGA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5