BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22540.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930243 jgi|Araly1|930243|scaffold_302700.1                        571    2e-162


> Ahg930243 jgi|Araly1|930243|scaffold_302700.1
Length=376

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 352/373 (94%), Gaps = 1/373 (0%)
 Strand=Plus/Plus

Query  44   ATAGGCTTCTTTAGTG-AAAATGGAGATCGAATCCGTGAGATGTGAGTGTTGTGGGTTAA  102
            |||||||| ||| ||| ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct  1    ATAGGCTTTTTTGGTGAAAAATGGAGATTGAATCTGTGAGATGCGAGTGTTGTGGGTTAA  60

Query  103  TGGAAGATTGCACACAAGACTACATTAGTGAGGTCAAATCTAACTTCGACAACAAGTGGC  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   TGGAAGATTGCACACAAGACTACATTAGTGAGGTCAAATCTAACTTCGACAACAAATGGC  120

Query  163  TCTGTGGTCTCTGCTCCGAAGCCGTGAGGGACGAAGTGAGTCGCCGGAAGATGACCACAG  222
            | |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct  121  TTTGTGGTCTCTGCTCTGAGGCCGTGAGGGACGAAGTAAGTCGCCGGAAGATGACCACCG  180

Query  223  TTGATGAAGCCGTCAAGGCCCACGTGTCGTTTTGTGGCAAGTTTAAAAAAGATAATCCGG  282
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTGATGAAGCCGTTAAGGCCCACGTGTCGTTTTGTGGCAAGTTTAAAAAAGATAATCCGG  240

Query  283  CGGTTCATGTCGCTGATGGTATGAGGCAGATGCTACGGAGGAGGTCCGGTGAGTTGACGA  342
            |||||||||| || || ||||||||||| |||||||| |||||||||||||| |||||||
Sbjct  241  CGGTTCATGTGGCCGACGGTATGAGGCAAATGCTACGTAGGAGGTCCGGTGACTTGACGA  300

Query  343  ATTCCTCTACGTCCAAGAAGTTTGGTAGATCTAACACCACCAAGTTGTACTGATCCATTT  402
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  301  CTTCCTCTACGTCCAAGAAGTTTGGTAGATCTAACACCACCAAGTTTTACTGATCCATTT  360

Query  403  TTCTTCTATTTCG  415
            |||||||||||||
Sbjct  361  TTCTTCTATTTCG  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5