BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22550.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318984 jgi|Araly1|318984|fgenesh1_pm.C_scaffold_3002000 1308 0.0
> Ahg318984 jgi|Araly1|318984|fgenesh1_pm.C_scaffold_3002000
Length=804
Score = 1308 bits (708), Expect = 0.0
Identities = 773/805 (96%), Gaps = 2/805 (0%)
Strand=Plus/Plus
Query 499 ATGCTAAAGAAGAGATCAAGAAGCAAGCAAGCTTTAATGGCGGAAACAAACCAGAGTCAG 558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCTAAAGAAGAGATCAAGAAGCAAGCAAGCTTTAATGGCGGAAACGAACCAGAGTCAG 60
Query 559 AATCAGAAACAGAGTAAAACGACGCCGTTTCCGAGGCTCTTCACAGCTTTTAGTAGCTTT 618
| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ACTCAGAAACAGAGTAAACCGACGCCGTTTCCAAGGCTCTTCACAGCTTTTAGTAGCTTT 120
Query 619 AAAAGCTTCACTGAAAACGACGCCGTCGCGAGTCCAACTTCAATTCTCGACACCAAACCT 678
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAAAGCTTCACTGAAAACGACGCCGTCGCGAGTCCAACTTCGATTCTCGACACCAAACCT 180
Query 679 TTCTCTGTTTTGAAAAACCCATTTGGATCCGATAACCCGAAAACCCAAGAACCCGAAACC 738
|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTCTCTATTTTGAAAAACCCTTTTGGATCCGATAACCCGAAAACCCACGAACCCGAAACC 240
Query 739 CGTCTCAAACTCGAACCCAAAAGAATCGGACTCGCCATTGTCGATTCTCTAATCCAAGAC 798
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 CGTCTCAGACTCGAACCCAAAAGAATCGGACTCGCCATTGTCGATTCTTTAATCCAAGAC 300
Query 799 GAAACACCCGAACCCGGACCGAGATCCGGGACAATTCTATTCGGGTCTCAGCTTCGGATC 858
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 301 GAAACACCCGAACCCGGACCGAGATCCGGGACGATTCTATTCGGGTCACAACTTCGGATC 360
Query 859 CGGGTCCCGGATTCTCCGA-TTTCCTCGTCGGATTTCGGGATCAAAACGAGGAATTCTCA 917
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CGGGTCCCGGATTCTCC-ACGTTCATCGTCGGATTTCGGGATCAAAACGAGGAATTCTCA 419
Query 918 ACCGGAGACGAAGAAACCGGGTTCCGAGTCGGGTCTTGGGTCTCCCAGAATCATCTCCGG 977
||||||||||||||| |||| | ||| ||||||||||||||| ||| |||||||||| ||
Sbjct 420 ACCGGAGACGAAGAAGCCGGATCCCGGGTCGGGTCTTGGGTCGCCCCGAATCATCTCTGG 479
Query 978 CTATTTCCCGGCGAGCGATATGGAGTTATCGGAGGATTACACATGCGTGACGTGTCACGG 1037
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CTATTTCTCGGTGAGCGATATGGAGCTATCGGAGGATTACACATGCGTGACGTGTCACGG 539
Query 1038 GCCTAACCCGAGAACCATTCATATATTCGATAACTGTATCGTTGAGAGCCAACCCGGCGT 1097
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GCCTAACCCGAGAACCATTCATATATTCGATAACTGTATCGTAGAGAGCCAACCCGGCGT 599
Query 1098 CGTTTTCTTCCGGAGCTCCGACCCGGTTAATGAATCGGATTCGGATTATTCCCCACCCGA 1157
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CGTTTTCTTCCGGAGCTCCGACCCGGTTAACGAATCGGATTCGGATTATTCCCCACCCGA 659
Query 1158 CAGTTTTCTCAGTTGTTGCTGTAACTGTAAGAAGAGTCTTGGGCCTCGTGATGACATTTT 1217
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CAGTTTTCTCAGTTCTTGCTGTAACTGTAAGAAGAGTCTTGGACCTCGTGATGACATTTT 719
Query 1218 CATGTACAGGGGAGATAGAGCTTTCTGTAGCAGTGAATGCAGGTCCATAGAGATGATGAT 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATGTACAGGGGAGATAGAGCTTTCTGTAGCAGTGAATGCAGGTCCATAGAGATGATGAT 779
Query 1278 GTCAGAGGAAAATGATACTAAATGA 1302
||||||||||||||||| |||||||
Sbjct 780 GTCAGAGGAAAATGATATTAAATGA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5