BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22560.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479775 jgi|Araly1|479775|fgenesh2_kg.3__2476__AT3G22560.1 859 0.0
> Ahg479775 jgi|Araly1|479775|fgenesh2_kg.3__2476__AT3G22560.1
Length=604
Score = 859 bits (465), Expect = 0.0
Identities = 559/605 (92%), Gaps = 3/605 (0%)
Strand=Plus/Plus
Query 72 TAAAACTAACAAAATTTTACATGATC-ATGGAATCACCAAGAATCTTCCTCCGGCCGTTC 130
||||| |||||||||||| || | | ||||| ||||| | |||||| ||||||||||||
Sbjct 1 TAAAAATAACAAAATTTTGCAAAACCAATGGATTCACCTATAATCTTTCTCCGGCCGTTC 60
Query 131 AATCTCTCCGATGCAGAAGACGTCTTTAAATGGGCCGGTGACGATGACGTCACACGTTAC 190
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 61 AATCTCTCCGATGCAGAAGACGTCCTCAAATGGGCCGGTGACGATGACGTGACACGTTAC 120
Query 191 CTCCGTTGGGACTCCGTTAACTCCTTAGAAGAAGCTAAACAACACATCTTAAACAAGGCT 250
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CTCCGTTGGGACTCCGTTAAAACCTTAGAAGAAGCCAAACAACACATCTTAAACAAGGCT 180
Query 251 ATACCACACCCATGGCGCCGTTCCATCTCTCTCCTCCAAGACGGTCATTCGATT-GGTTA 309
||||||||||||||||||||||||||||||||| ||||| |||||| |||| || |||||
Sbjct 181 ATACCACACCCATGGCGCCGTTCCATCTCTCTCGTCCAACACGGTCGTTCG-TTAGGTTA 239
Query 310 CGTATCCGTCAAGCCAGACTCCGGTGATGGTCGGTGCCGAGCCGACCTCGCATACGCTGT 369
||| |||||||| ||||| || |||||||||||||||||||||||||| ||||||||| |
Sbjct 240 CGTCTCCGTCAATCCAGATTCAGGTGATGGTCGGTGCCGAGCCGACCTTGCATACGCTAT 299
Query 370 CGCTAAAGAGTTTTGGGGGCGGGGGATAGCCACAGCGGCGGTGAGGATGGCGGTTGAACA 429
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 300 AGCTAAAGAGTTTTGGGGGCGAGGGATAGCCACGGCGGCGGTGAGGATGGCGGTGGAACA 359
Query 430 AGCTTTGGAGGATTTTCCGGAGGTGGTGAGGCTACAAGCGGTGGTGGAGGTGGAGAACAA 489
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCTTTCGAGGATTTTCCGGAGTTGGTGAGGCTACAAGCGGTGGTGGAGGTGGAGAACAA 419
Query 490 AGCGTCCCAAAGGGTTTTGGAGAAAGCTGGATTTCGAAAAGAGGGTTTACTTGAGAAGTA 549
|||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 AGCGTCTCAGAGGGTGTTGGAGAAAGCTGGATTTCGAAAAGAGGGTTTGCTTGAGAAGTA 479
Query 550 TGGTTTTAGCAAAGGAGTCATCAGAGACATGTTTCTCTATAGTTACGTTAAAGATGATTG 609
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGTTTTAGCAAAGGAGTGATCAAAGACATGTTTCTCTATAGTTTTGTTAAAGATGATTG 539
Query 610 TTTTGTGTGATAGTTAACGGTAAAAATAATGGAGAAAGTAACTAAATAATATCCGGTTTT 669
|||||||| ||| ||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 540 TTTTGTGTAATAATTAACGGTAGAAATAATGGAGGAAGTAAGTAAATAATATCCGGTTTT 599
Query 670 TACCG 674
|||||
Sbjct 600 TACCG 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5