BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22590.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905293 jgi|Araly1|905293|Al_scaffold_0003_2421 1914 0.0
> Ahg905293 jgi|Araly1|905293|Al_scaffold_0003_2421
Length=1245
Score = 1914 bits (1036), Expect = 0.0
Identities = 1180/1250 (94%), Gaps = 7/1250 (1%)
Strand=Plus/Plus
Query 66 ATGGATCCATTATCAGTCCTGAAAGAATTCACAATCCGAGGAGACATTGATAAAATCGAG 125
|||||||| |||||||| |||||||| |||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGATCCTTTATCAGTGCTGAAAGATTTCACAATCCGAGGAGACGTTGATAAAATAGAG 60
Query 126 AGAGTTGGAGCTAATTACAGATTCGGATCGGAATATTCGTTTCCATGCGCGACGGAGACT 185
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CGAGTCGGAGCCAATTACAGATTCGGATCGGAATATTCGTTCCCATGCGCGACGGAGACG 120
Query 186 GCGTACCGATCAAAAAGTGGAAGTCTCTACACACTAGAAGCATTAGTACACTACGTGAAG 245
|| |||||||||||| |||||| |||||||||||| ||||||||||| ||||| ||||||
Sbjct 121 GCATACCGATCAAAAGGTGGAACTCTCTACACACTCGAAGCATTAGTTCACTATGTGAAG 180
Query 246 AATCAACAACTGAAACATGGAGAGTATATGCAATCAACAGTCAAAAACTCAGTCCCGGCG 305
|||||||| ||||| || |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 181 AATCAACATCTGAAGCACGGAGAGTATATGCAATCAACCGTCAAAAGCTCCGTCCCGGCG 240
Query 306 GTTACTTTACCAGATCGGAAACCTCTCCTCGATTACCTCACCGGAAGAGTCGCTTCTTCA 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTACTTTACCAGATCGGAAACCTCTCCTCGATTACCTCACCGGAAGAGTCGCTTCTTCC 300
Query 366 GATTCTATTGATTTCCTCTTGCTTCAACAGCAAAACGCACAGAGTCAGAAGCAGAACGAA 425
||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GATTCAATTGATTACCTTTTGCTTCAGCAGCAAAACGCACAGAGTCAGAAGCAGAACGAA 360
Query 426 GAGTATCGACCAGATCAAGACAATTCAGCTTTTGTATCGCGCGAAAACGCGATTGCA-GA 484
|||||||||||||||||||| |||||||| ||||| || || ||||||||||||| | ||
Sbjct 361 GAGTATCGACCAGATCAAGATAATTCAGCGTTTGTGTCTCGTGAAAACGCGATTG-AGGA 419
Query 485 TATGGAGGTTGAAGATTTCGGTAAATCCGGTGAAGATGTTGATTACATTATGCTGATTCG 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 420 TATGGAGGTTGAAGATTTCGGTAAATCCGGCGAAGATGTTGATTACATTATGCTGATACG 479
Query 545 ATCCAACGAACGTCCATTGAAGAGCCGTGACGCGATTCTTCAGTGTAAGAATC-GAGATT 603
|||||| ||||| || ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 480 ATCCAATGAACGGCCGTTGAAGAGCCGTGACGCGATTCTTCAGTGTAAGAA-CAGAGATT 538
Query 604 TCTATAGTGTGCTGGTGAATTCTACCAagagagaagaagagagacagagGATTGAGTCTC 663
| ||||||||| |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 539 TTTATAGTGTGTTGGTGAATTCGACTAAAAGAGAAGAAGAGAGACAGAGGATTGAGTCTC 598
Query 664 ATCAGAGGAAAGATGGATTAGTTGCTAAGAGTAGGTTAATGGGAGCTGAAGAAAGAGGTA 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 ATCAGAGGAAAGATGGATTAGTTGCTAAGAGTAGGTTAATGGGAGCTGAAGAGAGAGGTA 658
Query 724 TTGTAGGGTTTAGTAGTGGTGGTGGTGATGATAATGGTTATGATGCTAATCCTAAATCTA 783
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGTAGGG-TT--TAGTGGTGGTGGTGATGATAATGGTTATGATGCTAATCCTAAATCTA 715
Query 784 AGCTTCATTTTAAAGCTGGGAAGATTGGTGAAGGTGTGCCGATTATTCTTGTCCCGAGTG 843
|||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||
Sbjct 716 AGCTTCATTTTAAAGCTGGGAAGATTGGAGAAGGCGTACCGATAATTCTTGTGCCGAGTG 775
Query 844 CGTTTCAGACTTTGATTACTATATATAACGTTAAAGAGTTTCTTGAAGATGGTGTTTATA 903
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 CGTCTCAGACGTTGATTACTATATATAATGTTAAAGAGTTTCTTGAAGATGGTGTTTATA 835
Query 904 TACCTAATGATGTTAAGGCTAAGGAGATGAAGGGGTTGAAGCCTGATTGTATTACGGTTC 963
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 TACCGAATGATGTTAAGGCGAAGGAGATGAAGGGGTTGAAGCCGGATTGTATTACGGTTC 895
Query 964 AGAAGAAGTTTAGTAGAGATAGGGAGAGAGTTGTGACTGCTTATGAAGTTAGGGATAAGC 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAAGAAGTTTAGTAGAGATAGGGAGAGAGTTGTGACTGCTTATGAAGTTAGGGATAAGC 955
Query 1024 CTTCTGCTTTGAAGCCTGATGATTGGGATCGTGTTGTTGCGGTTTTTGTATTGGGGAAGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTTCTGCTTTGAAGCCTGATGATTGGGATCGTGTTGTTGCGGTTTTTGTATTGGGGAAGG 1015
Query 1084 ATTGGCAGTTTAAAGATTGGCCTTTTAAGGATCATGTTGAGATATTCAATAAGATTATTG 1143
|||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1016 ATTGGCAGTTCAAGGATTGGCCTTTTAAGGATCACGTTGAAATATTCAATAAGATCATTG 1075
Query 1144 GATTCTTCTTGCGGTTTGAAGATGATAGTATCGAATCAGCCAAGACGGTGAAGCAGTGGA 1203
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1076 GGTTCTTCTTGCGGTTTGAAGATGACAGTATCGAATCAGCCAAGACGGTGAAGCAATGGA 1135
Query 1204 ATGTAAAGATCATCTCGATTAGCAAGAATAAGCGGCATCAAGACCGAGCTGCTGCATTAG 1263
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 ATGTAAAGATCATCTCGATTAGCAAGAATAAGCGGCATCAAGACCGGGCTGCTGCATTAG 1195
Query 1264 AAGTCTGGGAAAAACTCGAGGAGTTTGTGCGATCTCGGTCGCATTCTTAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AAGTCTGGGAAAAACTCGAGGAGTTTGTGCGATCTCGGTCGCATTCTTAG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5