BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22600.1

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905294 jgi|Araly1|905294|Al_scaffold_0003_2422                    715    0.0  


> Ahg905294 jgi|Araly1|905294|Al_scaffold_0003_2422
Length=513

 Score =  715 bits (387),  Expect = 0.0
 Identities = 477/519 (92%), Gaps = 12/519 (2%)
 Strand=Plus/Plus

Query  75   ATGAAAATGGAAATGGGTTTAGTGTTCCTTACAGTTTTTATGGCTGTGATGTCTTCTACA  134
            |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  1    ATGAAAATGGGAATGGGTTTAGTGTTTCTTACAGTTTTTATGGCAGTGATGTCTTCTACA  60

Query  135  ATGGTCTCTGCTCAGTCAAGCTGCACAAACGCGTTGATTAGCATGTCGCCGTGTCTCAAC  194
              ||||||||| ||||| ||||| ||||| | |||||||||| || ||||||||||||||
Sbjct  61   GGGGTCTCTGCCCAGTCCAGCTGTACAAATGTGTTGATTAGCTTGGCGCCGTGTCTCAAC  120

Query  195  TACATAACTGGAAACTCTACCTCTCCTAATCAGCAATGCTGTAATCAGTTGAGTAGAGTA  254
            |||||||| ||||||||||||||||||| |||||||||||||  ||||||| |||| |||
Sbjct  121  TACATAACCGGAAACTCTACCTCTCCTACTCAGCAATGCTGTCGTCAGTTGGGTAGCGTA  180

Query  255  GTCCAGTCTTCTCCTGACTGTTTGTGTCAAGTCCTTAACGGTGGAGGCTCTCAGCTTGGG  314
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  GTCCAGTCTTCTCCTGACTGTTTGTGTCAAGTCCTCAACGGTGGAGGCTCTCAGCTTGGG  240

Query  315  ATCAATGTTAACCAAACACAAGCTCTTGGTCTGCCTAGGGCTTGTAATGTTCAGACTCCT  374
            || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  241  ATTAATGTTAACCAAACACAAGCTCTTGGTCTACCAAGGGCTTGTAATGTTCAGACTCCT  300

Query  375  CCTGTCAGTCGCTGTAATA-C-C-ggtggtggtggtggtggtTCTA-CTTCTGACTCTCC  430
            ||||| ||||||||||||| | | |||||||||||||||||||| | |||||||||||||
Sbjct  301  CCTGTTAGTCGCTGTAATACCGCTGGTGGTGGTGGTGGTGGTTC-ATCTTCTGACTCTCC  359

Query  431  TGCAGAATCACCAAACTCTTCAGGACCAGGTAATGGATCGAAAACCGTACCAGTAGGAGA  490
            |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||
Sbjct  360  TGCAGAATCACCAAACTCTTCAGGACCAGGAAATGGATCGAAATCCGTACCAGCAGGGGA  419

Query  491  AGGAGACGGACCCCCATCGTCTGATGGAAGCTCTATCAAGTTCTCATTTCCTCTTA-TTG  549
            ||||||||||||   |||||||||||||||||||||||||||||||||||| |||  |||
Sbjct  420  AGGAGACGGACC---ATCGTCTGATGGAAGCTCTATCAAGTTCTCATTTCC-CTTTCTTG  475

Query  550  CCTTC-TTCTCCGCGGTTTCCTACATGGCAATCTTCTGA  587
            ||||| || ||||||| ||||||||| ||||||||||||
Sbjct  476  CCTTCCTT-TCCGCGGCTTCCTACATCGCAATCTTCTGA  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29164031505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5