BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22620.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479778 jgi|Araly1|479778|fgenesh2_kg.3__2479__AT3G22620.1 1162 0.0
> Ahg479778 jgi|Araly1|479778|fgenesh2_kg.3__2479__AT3G22620.1
Length=827
Score = 1162 bits (629), Expect = 0.0
Identities = 752/811 (93%), Gaps = 10/811 (1%)
Strand=Plus/Plus
Query 49 ACAACAAACAATCAAAGCTTAATCTATCCAACAATGTCGAAGATTAT-TTCCCTTGTGGT 107
||||||||||| |||| |||||||||||||||||||||||||||| | | | | |||||
Sbjct 22 ACAACAAACAAACAAACCTTAATCTATCCAACAATGTCGAAGATTCTAGT-CGTGGTGGT 80
Query 108 GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGTGGTCAACAACAACCTCTAAGCCAATG 167
||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 81 GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGCAGTCAACAACAACCGCTTAGCCAATG 140
Query 168 TACTCCATCAATGATGACCACCGTGAGTCCTTGTATGGGCTTCATAACCAACAGTAGCAG 227
|||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 141 TACTCCGTCTATGATGACCACTGTGAGTCCTTGTATGAGCTTCATAACCAACAGTAGCAG 200
Query 228 CAATGGAACTTCGCCGTCGTCTGATTGTTGTAACTCGCTGAGGTCTTTGACCACCGGAGG 287
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 201 CAACGGAACTTCGCCGTCGTCTGATTGTTGCAACTCGCTGAGGTCTTTGACCACCGGAGG 260
Query 288 AATGGGATGTCTTTGTCTAATTGTCACTGGAACTGTTCCTTTCAATATTCCTATTAACCG 347
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 261 GATGGGATGTCTCTGTCTAATTGTCACTGGAACTGTGCCTTTCAATATTCCGATTAACCG 320
Query 348 CACAACCGCTGTCTCACTTCCCCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA 407
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 CACAACCGCCGTCTCTCTTCCTCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA 380
Query 408 AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGCTACATTTGGACCATCGATGTC 467
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 381 AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGGTACATTTGGACCGTCGATGTC 440
Query 468 TCCAGGACCAGAGACGGATCCAATTGTTCCAGAGCCAACTCCGGCAGCTCAGACACCACA 527
|||||| |||| |||| |||| || || |||||||||||| || ||||||||||||||||
Sbjct 441 TCCAGGTCCAGCGACGAATCCTATAGTCCCAGAGCCAACTGCGTCAGCTCAGACACCACA 500
Query 528 GTCTGATACAACCCGACCATTT-ACACCATCCGTCGACGGTGGAGCTCCAACATCAGACG 586
|||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||
Sbjct 501 GTCTGATACAACCCGACC-TTTCACACCATCTGCCGATGGTGGAGCTCCAACATCAGACG 559
Query 587 ACGGAGGAAGCACCAGTCGACCTTCTGAGACTCCTTCATCCGCCTACGCACTCTCACCAT 646
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 560 ACGGAGGCAGCACCAGTCGACCTTCTGAGACTCCTTCATCTGCCTACGCACTCTCACCAT 619
Query 647 CTCTTCTCTTCTTCAGCATCGCCCTCGTAGCTCTCAAATTCTACT---GATGATTCCTTT 703
||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 620 CTCTTTTCTTATTCAGCATCGCCCTCGTAGCTCTCAAATTCTACTAATGATGATTTCTTT 679
Query 704 TGTTTCTTTGCATTCCTTATGTGATTTGATTTATGCATCGTTGATTATAGAAAGAAACCA 763
||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 680 -GTTTCTTTGTATTCCTCATGTGATTTGATTTATGCATTGTTGATTATATAAAGAAACCA 738
Query 764 TTTATTTGGTCATTGCTTTGTGGAATAAGCTTTTGTGTATACTGTTCTCTGTTTCGAGTG 823
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 739 TTTATTTGGTCATTGCTTTGTGGAATAAGCTT--GTGTATATTGTTCTTTGTTTCGAGTG 796
Query 824 AGATTTATTTTGTGTTGTTGAAGTAATACAT 854
||||||||||||| ||||| |||||||||||
Sbjct 797 AGATTTATTTTGTATTGTTAAAGTAATACAT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5