BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22630.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930250 jgi|Araly1|930250|scaffold_302707.1 1018 0.0
Ahg493416 jgi|Araly1|493416|fgenesh2_kg.7__2849__AT4G14800.1 662 0.0
> Ahg930250 jgi|Araly1|930250|scaffold_302707.1
Length=655
Score = 1018 bits (551), Expect = 0.0
Identities = 618/651 (95%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 55 GATCTGTAGACGGAAGATGGAGTGTGTATTCGGTCTTGTTGGGAATGGATTCGCCATCGT 114
|||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 6 GATCTGTATAC-GAAGATGGAGTGTGTATTCGGTCTTGTTGGAAATGGATTCGCTATCGT 64
Query 115 TGCTGCTGATACATCGGCGGTTCATAGTATCCTTCTTCACAAAAACAACGAAGACAAGAT 174
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 TGCTGCTGATACATCGGCGGTTCATAGTATCCTTCTCCACAAAAACAACGAAGACAAGAT 124
Query 175 CATGGTACTTGACTCACACAAGCTTGTTGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCA 234
|||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 125 CATGGTTCTTGACTCTCACAAGCTCGTCGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCA 184
Query 235 GTTTACGGAGTACGTTCAGAAGAATGTGTCCTTGTACAAATTCAGAAATGGAATCCCGTT 294
||||||||||||||||||||||||||||| |||||||||||| | || |||||||| ||
Sbjct 185 ATTTACGGAGTACGTTCAGAAGAATGTGTCGTTGTACAAATTCCGTAACGGAATCCCTTT 244
Query 295 GACTACCGCCGCTGCTGCCAATTTCACTCGCGGAGAGCTCGCTACTGCTTTGAGGAAGAA 354
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 245 GACTACCGCCGCTGCTGCGAATTTCACTCGCGGAGAGCTCGCTACTGCGTTGAGGAAGAA 304
Query 355 TCCGTATTCGGTGAATATCCTGATGGCTGGCTATGACGATGAGTCTGGTGCATCACTTTA 414
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 305 TCCGTATTCGGTGAATATCCTTATGGCTGGCTATGACAATGAGTCTGGTGCATCCCTTTA 364
Query 415 CTACATCGACTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTTGGTTACGGCTC 474
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 365 CTACATCGACTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTCGGTTACGGATC 424
Query 475 CTACTTCTCCCTCTCCACGATGGACAGGCATTACCGCAGTGACATGTCTGTAGAAGAAGC 534
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 TTATTTCTCCCTCTCCACGATGGACAGGCATTACCGCAGCGACATGTCTGTAGAAGAAGC 484
Query 535 CATTGAACTAGTTGACAAATGCATACTTGAGATCCGGTCAAGACTCGTTGTTGCACCACC 594
||||||||| ||||||||||||||||||||||||||||||||| | || ||||| || ||
Sbjct 485 CATTGAACTGGTTGACAAATGCATACTTGAGATCCGGTCAAGATTGGTCGTTGCGCCGCC 544
Query 595 AAACTTTGTGATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGTCAGTC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AAACTTTGTGATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGTCAGTC 604
Query 655 CGTAAAGGATGTCACAACTGCTGTTGTCTGAGTTGGTTTTGTGTTTGGTTT 705
||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 605 CGTAAAGGATGTCACAACTGCTGCTGTCTGAGTTGGTTT-GTGTTTGGTTT 654
> Ahg493416 jgi|Araly1|493416|fgenesh2_kg.7__2849__AT4G14800.1
Length=814
Score = 662 bits (358), Expect = 0.0
Identities = 511/586 (87%), Gaps = 6/586 (1%)
Strand=Plus/Plus
Query 67 GAAGATGGAGTGTGTATTCGGTCTTGTTGGGAATGGATTCGCCATCGTTGCTGCTGATAC 126
|||||||||||||||||| ||||| ||||||||||||||||| ||||| || || |||||
Sbjct 71 GAAGATGGAGTGTGTATTTGGTCTAGTTGGGAATGGATTCGCTATCGTGGCGGCGGATAC 130
Query 127 ATCGGCGGTTCATAGTATCCTTCTTCACAAAAACAACGAAGACAAGATCATGGTACTTGA 186
||| || ||||| ||||| ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 131 ATCAGCAGTTCACAGTATTCTTCTTCACAAGAACAAGGAGGACAAGATCATGGTTCTTGA 190
Query 187 CTCACACAAGCTTGTTGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCAGTTTACGGAGTA 246
||| |||||||| || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 191 CTCTCACAAGCTCGTCGCCGCTAGTGGCGAGCCTGGTGATCGGGTTCAGTTTACGGAGTA 250
Query 247 CGTTCAGAAGAATGTGTC-CTTGTA-CAAATTCAGAAATGGAATCCCGTTGACTACCGCC 304
||||||||||||||||| | |||| || ||| | ||||| |||| |||||||| ||
Sbjct 251 TGTTCAGAAGAATGTGTCAC-TGTATCAGTTTC-GTAATGGGCTCCCTTTGACTACTGCT 308
Query 305 GCTGCTGCCAATTTCACTCGCGGAGAGCTCGCTACTGCTTTGAGGAAGAATCCGTATTCG 364
|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 309 GCTGCTGCTAACTTCACTCGTGGAGAGCTCGCTACTGCTTTGAGAAAGAATCCGTATTCG 368
Query 365 GTGAATATCCTGATGGCTGGCTATGACGATG-AGTCTGGTGCATCACTTTACTACATCGA 423
||||| |||||||||||||| || ||| | | || | || ||||| || |||||||| ||
Sbjct 369 GTGAACATCCTGATGGCTGGATACGACAAAGAAG-CCGGGGCATCTCTATACTACATTGA 427
Query 424 CTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTTGGTTACGGCTCCTACTTCTC 483
||||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||||||
Sbjct 428 CTACATTGCAACTCTCCACAAGGTTGATAAGGGAGCTTTCGGTTACGGCTCATACTTCTC 487
Query 484 CCTCTCCACGATGGACAGGCATTACCGCAGTGACATGTCTGTAGAAGAAGCCATTGAACT 543
||||| || |||||||| || |||||||| ||||||||||| ||||||||||||||| |
Sbjct 488 TCTCTCTACAATGGACAGACACTACCGCAGCGACATGTCTGTTGAAGAAGCCATTGAATT 547
Query 544 AGTTGACAAATGCATACTTGAGATCCGGTCAAGACTCGTTGTTGCACCACCAAACTTTGT 603
|| |||||||||||||| |||||| ||||||| || || |||||||||||||||||||
Sbjct 548 GGTCGACAAATGCATACTCGAGATCAGGTCAAGGCTGGTCATTGCACCACCAAACTTTGT 607
Query 604 GATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGT 649
|||||||||||| ||||| |||||||| ||||| |||| |||||||
Sbjct 608 GATCAAGATTGTCGACAAGGATGGAGCCCGTGAGTACGATTGGCGT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5