BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22640.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342406 jgi|Araly1|342406|fgenesh1_pg.C_scaffold_3002169 2069 0.0
> Ahg342406 jgi|Araly1|342406|fgenesh1_pg.C_scaffold_3002169
Length=1464
Score = 2069 bits (1120), Expect = 0.0
Identities = 1353/1467 (92%), Gaps = 9/1467 (1%)
Strand=Plus/Plus
Query 20 ATGGCAATAACCAACAAATTAATCATAACACTTCTTCTCCTTATCTCCATAGCTGTCGTC 79
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGGCAATAACCAACAAATTAATCATAACACTTCTCCTCCTTATCTCCATAGCTTTCGTC 60
Query 80 CACTGCTTATCCTTCCGTGTGGAGATCGACGAGTTCGAGCCACCACAGCAAGGAGAACAA 139
|||||||| |||||| |||||| ||||| ||||||||||||| ||||||| |||||||
Sbjct 61 CACTGCTTGGCCTTCCATGTGGATATCGAAAAGTTCGAGCCACCGCAGCAAGAAGAACAA 120
Query 140 GAAGGTCCCCGTCGCCGTCCTGGTGGTGGCTCTGGCGAGGGATGGGAGGAAGAGTCGACG 199
||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 121 GAAGGTCCCGGCCGCCGTCCTGGCGGTGGCTCCGGTGAGGGATGGGAGGAAGAGTCGACG 180
Query 200 AATCATCCATACCACTTCAGGAAGCGGAGTTTC-AGTGATTGGTTCCAGTCAAAGGAAGG 258
||||| || |||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 181 AATCACCCGTACCACTTCAGGAAGCGGAGTTTCAAG-AACTGGTTCCAGTCAAAGGAAGG 239
Query 259 TTTTGTGAGAGTGCTGCCTAAGTTCACAAAACATGCACCGGCTCTCTTCCGAGGAATCGA 318
|||||||| | || |||| ||||||||||||| |||||| ||||||||||| ||||| ||
Sbjct 240 TTTTGTGAAATTGTTGCCCAAGTTCACAAAACGTGCACCAGCTCTCTTCCGCGGAATTGA 299
Query 319 GAACTACAGATTCTCGTTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTT 378
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAACTACAGATTCTCATTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTG 359
Query 379 GGATGCCGATGCTGTTTTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 438
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGATGCTGATTCCGTGGTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 419
Query 439 TAAAACAAAAGAATCGTTCCACAT-AACTAAAGGTGATGTGGTAAGAATCCCTTCTGGTG 497
||| ||||| ||| | || || || ||| |||||||||||||| ||| ||||||| || |
Sbjct 420 TAACACAAAGGAAGCCTTTCATATAAAC-AAAGGTGATGTGGTGAGAGTCCCTTCCGGCG 478
Query 498 TCACCAACTTTATCACCAACACTAACCAGACGGTTCCTCTCCGCCTCGCCCAGATCACCG 557
||||| |||| |||||||||||||||| || |||||||||||||||||| || ||| |
Sbjct 479 TCACCCACTTCCTCACCAACACTAACCAAACCGTTCCTCTCCGCCTCGCCAAGTTCATAG 538
Query 558 TCCCTGTCAACAATCCCGGCAACTACAAGGATTACTTCCCTGCTGCATCCCAATTTCAGC 617
|||| ||||||||||| ||| | | ||||||||||||||| || |||| ||||||||||
Sbjct 539 TCCCCGTCAACAATCCTGGCCAGTTTAAGGATTACTTCCCTTCTCCATCGCAATTTCAGC 598
Query 618 AATCCTACTTCAATGGGTTTACCAAAGAAGTCCTCTCTACCAGTTTCAACGTGCCGGAAG 677
|||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 599 AATCCTACTTCAGTGGGTTAAGCAAAGAAGTCCTCTCTACCAGTTTCAACGTACCGGAAG 658
Query 678 AATTGCTAGGGAGATTGGTTACGAGATCAAAAGAAATTGGTCAAGGGATTATCCGAAGAA 737
||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 659 AATTGCTAGAGAGATTGGTTACAAGATCGAAAGAAAGGGGTCAAGGGATTATCCGAAGAA 718
Query 738 TTTCTCCAGACCAAATCAAGGAACTTGCTGAGCACGCTACATCTCCTTCAAACAAACACA 797
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 719 TTTCTCCAGACCAAATCAAGGAACTTGCCGAACACGCTACATCTCCTTCAAACAAACACA 778
Query 798 AAGCCAAAAAAGAAAAGGAGGAAGACAAAGACCTAAGAACGTTGTGGACTCCTTTCAATC 857
|||| ||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 779 AAGCTAAAAAAGAAAAGGAGGAAGACAAAGACTTGAGGACGATGTGGACTCCTTTCAATC 838
Query 858 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 898
Query 918 AGAATTATAATCAACTGCAAGACCTTCACATAGCCGCCGCTTGGGCTAACATGACACAGG 977
||| || | ||||||| |||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 899 AGAGTTTTGATCAACTCCAAGACCTTCACATAGCCACCGCTTGGGCTAGCATGAGACAGG 958
Query 978 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACATTTGTAACGTTTGTGGAGAATG 1037
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACGTTTGTAACGTTTGTGGAGAATG 1018
Query 1038 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATTCCAAAGAGG-GCAACAACAATGG 1096
|||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||
Sbjct 1019 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATCCCAA-GAAGAGCAACAACAATGG 1077
Query 1097 CCAGGACAAGGACAAGAA---GAAGAAGAAGATATGAGTGAAAACGTACACAAAGTTGTG 1153
|||||||||||||||||| |||||||||||| | |||||| | ||||||||||||||
Sbjct 1078 CCAGGACAAGGACAAGAACAAGAAGAAGAAGATCTAAGTGAAGATGTACACAAAGTTGTA 1137
Query 1154 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1197
Query 1214 TCGCAAGATCAAGACTTTATCGCGGTAGGGTTTGGTATTTATGCGACCAACAGCAAAAGA 1273
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1198 TCGCAAGATCAAGACTTTGTCGCGGTAGGGTTTGGTATTTATGCGACCAACAACAAACGA 1257
Query 1274 ACGTTCCTTGCAGGGGAAGAGAATTTGCTGAGCAACCTCAACCCGGCGGCAACTAGGGTA 1333
|||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 1258 ACGTTCCTTGCAGGGGAAGAGAATATGCTGAGCAACCTCAACCCCGCGGCGACTAGGGTA 1317
Query 1334 ACCTTTGGTGTTGGAAGTAAAGTCGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1393
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACCTTCGGTGTTGGAAGTAAATTGGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1377
Query 1394 TTTGCACCTACGAGTCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1453
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTTGCGCCTACGAGCCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1437
Query 1454 TCAATCTTAGACTTTGCTGGTTTTTGA 1480
||||||||||||||||| |||||||||
Sbjct 1438 TCAATCTTAGACTTTGCCGGTTTTTGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5