BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22640.1 Length=1658 Score E Sequences producing significant alignments: (Bits) Value Ahg342406 jgi|Araly1|342406|fgenesh1_pg.C_scaffold_3002169 2069 0.0 > Ahg342406 jgi|Araly1|342406|fgenesh1_pg.C_scaffold_3002169 Length=1464 Score = 2069 bits (1120), Expect = 0.0 Identities = 1353/1467 (92%), Gaps = 9/1467 (1%) Strand=Plus/Plus Query 20 ATGGCAATAACCAACAAATTAATCATAACACTTCTTCTCCTTATCTCCATAGCTGTCGTC 79 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1 ATGGCAATAACCAACAAATTAATCATAACACTTCTCCTCCTTATCTCCATAGCTTTCGTC 60 Query 80 CACTGCTTATCCTTCCGTGTGGAGATCGACGAGTTCGAGCCACCACAGCAAGGAGAACAA 139 |||||||| |||||| |||||| ||||| ||||||||||||| ||||||| ||||||| Sbjct 61 CACTGCTTGGCCTTCCATGTGGATATCGAAAAGTTCGAGCCACCGCAGCAAGAAGAACAA 120 Query 140 GAAGGTCCCCGTCGCCGTCCTGGTGGTGGCTCTGGCGAGGGATGGGAGGAAGAGTCGACG 199 ||||||||| | ||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct 121 GAAGGTCCCGGCCGCCGTCCTGGCGGTGGCTCCGGTGAGGGATGGGAGGAAGAGTCGACG 180 Query 200 AATCATCCATACCACTTCAGGAAGCGGAGTTTC-AGTGATTGGTTCCAGTCAAAGGAAGG 258 ||||| || |||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 181 AATCACCCGTACCACTTCAGGAAGCGGAGTTTCAAG-AACTGGTTCCAGTCAAAGGAAGG 239 Query 259 TTTTGTGAGAGTGCTGCCTAAGTTCACAAAACATGCACCGGCTCTCTTCCGAGGAATCGA 318 |||||||| | || |||| ||||||||||||| |||||| ||||||||||| ||||| || Sbjct 240 TTTTGTGAAATTGTTGCCCAAGTTCACAAAACGTGCACCAGCTCTCTTCCGCGGAATTGA 299 Query 319 GAACTACAGATTCTCGTTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTT 378 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GAACTACAGATTCTCATTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTG 359 Query 379 GGATGCCGATGCTGTTTTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 438 |||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGATGCTGATTCCGTGGTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 419 Query 439 TAAAACAAAAGAATCGTTCCACAT-AACTAAAGGTGATGTGGTAAGAATCCCTTCTGGTG 497 ||| ||||| ||| | || || || ||| |||||||||||||| ||| ||||||| || | Sbjct 420 TAACACAAAGGAAGCCTTTCATATAAAC-AAAGGTGATGTGGTGAGAGTCCCTTCCGGCG 478 Query 498 TCACCAACTTTATCACCAACACTAACCAGACGGTTCCTCTCCGCCTCGCCCAGATCACCG 557 ||||| |||| |||||||||||||||| || |||||||||||||||||| || ||| | Sbjct 479 TCACCCACTTCCTCACCAACACTAACCAAACCGTTCCTCTCCGCCTCGCCAAGTTCATAG 538 Query 558 TCCCTGTCAACAATCCCGGCAACTACAAGGATTACTTCCCTGCTGCATCCCAATTTCAGC 617 |||| ||||||||||| ||| | | ||||||||||||||| || |||| |||||||||| Sbjct 539 TCCCCGTCAACAATCCTGGCCAGTTTAAGGATTACTTCCCTTCTCCATCGCAATTTCAGC 598 Query 618 AATCCTACTTCAATGGGTTTACCAAAGAAGTCCTCTCTACCAGTTTCAACGTGCCGGAAG 677 |||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||| Sbjct 599 AATCCTACTTCAGTGGGTTAAGCAAAGAAGTCCTCTCTACCAGTTTCAACGTACCGGAAG 658 Query 678 AATTGCTAGGGAGATTGGTTACGAGATCAAAAGAAATTGGTCAAGGGATTATCCGAAGAA 737 ||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 659 AATTGCTAGAGAGATTGGTTACAAGATCGAAAGAAAGGGGTCAAGGGATTATCCGAAGAA 718 Query 738 TTTCTCCAGACCAAATCAAGGAACTTGCTGAGCACGCTACATCTCCTTCAAACAAACACA 797 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 719 TTTCTCCAGACCAAATCAAGGAACTTGCCGAACACGCTACATCTCCTTCAAACAAACACA 778 Query 798 AAGCCAAAAAAGAAAAGGAGGAAGACAAAGACCTAAGAACGTTGTGGACTCCTTTCAATC 857 |||| ||||||||||||||||||||||||||| | || ||| |||||||||||||||||| Sbjct 779 AAGCTAAAAAAGAAAAGGAGGAAGACAAAGACTTGAGGACGATGTGGACTCCTTTCAATC 838 Query 858 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 898 Query 918 AGAATTATAATCAACTGCAAGACCTTCACATAGCCGCCGCTTGGGCTAACATGACACAGG 977 ||| || | ||||||| |||||||||||||||||| |||||||||||| ||||| ||||| Sbjct 899 AGAGTTTTGATCAACTCCAAGACCTTCACATAGCCACCGCTTGGGCTAGCATGAGACAGG 958 Query 978 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACATTTGTAACGTTTGTGGAGAATG 1037 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 959 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACGTTTGTAACGTTTGTGGAGAATG 1018 Query 1038 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATTCCAAAGAGG-GCAACAACAATGG 1096 |||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||| Sbjct 1019 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATCCCAA-GAAGAGCAACAACAATGG 1077 Query 1097 CCAGGACAAGGACAAGAA---GAAGAAGAAGATATGAGTGAAAACGTACACAAAGTTGTG 1153 |||||||||||||||||| |||||||||||| | |||||| | |||||||||||||| Sbjct 1078 CCAGGACAAGGACAAGAACAAGAAGAAGAAGATCTAAGTGAAGATGTACACAAAGTTGTA 1137 Query 1154 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1197 Query 1214 TCGCAAGATCAAGACTTTATCGCGGTAGGGTTTGGTATTTATGCGACCAACAGCAAAAGA 1273 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || Sbjct 1198 TCGCAAGATCAAGACTTTGTCGCGGTAGGGTTTGGTATTTATGCGACCAACAACAAACGA 1257 Query 1274 ACGTTCCTTGCAGGGGAAGAGAATTTGCTGAGCAACCTCAACCCGGCGGCAACTAGGGTA 1333 |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| Sbjct 1258 ACGTTCCTTGCAGGGGAAGAGAATATGCTGAGCAACCTCAACCCCGCGGCGACTAGGGTA 1317 Query 1334 ACCTTTGGTGTTGGAAGTAAAGTCGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1393 ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1318 ACCTTCGGTGTTGGAAGTAAATTGGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1377 Query 1394 TTTGCACCTACGAGTCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1453 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TTTGCGCCTACGAGCCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1437 Query 1454 TCAATCTTAGACTTTGCTGGTTTTTGA 1480 ||||||||||||||||| ||||||||| Sbjct 1438 TCAATCTTAGACTTTGCCGGTTTTTGA 1464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62163279840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5