BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22660.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479780 jgi|Araly1|479780|fgenesh2_kg.3__2481__AT3G22660.1 1668 0.0
> Ahg479780 jgi|Araly1|479780|fgenesh2_kg.3__2481__AT3G22660.1
Length=1130
Score = 1668 bits (903), Expect = 0.0
Identities = 1068/1145 (93%), Gaps = 22/1145 (2%)
Strand=Plus/Plus
Query 9 GTTTCTTCTTCTTCTTCCTTGCGCCGGCGGGTTCACTAtctctcttctctctctcAAAAA 68
||||||||||||||||| |||||||||| | ||||||| ||||||||| ||||
Sbjct 1 GTTTCTTCTTCTTCTTCTTTGCGCCGGC-GTTTCACTA-------TCTCTCTCT--AAAA 50
Query 69 CCC-TACTCAAGCACAAGCTTCTTCAATCTTCTCCGTAATCAACAATGTCATTGGAAGAG 127
||| | | |||||| |||||||||||||||||| |||| | ||||||||| |||||||||
Sbjct 51 CCCTTTC-CAAGCAAAAGCTTCTTCAATCTTCTTCGTAGTTAACAATGTCGTTGGAAGAG 109
Query 128 GATATAGTATCAgatgatgagatgaacatgattgatgaggatga-tgCTACTGACTCCGA 186
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 110 GATATAGTATCAGATGATGAGATGAACATGATTGATGAGGAT-AGTGCTACTGACTCTGA 168
Query 187 AGCGGAGTCTCTTTCGGATTCGGATACAGAGAACGAGATCACCGAGAAATTGGCTGAGCC 246
|||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 169 AGCGGAATCGCTTTCGGATTCGGATACAGAGAACGAGATAACGGAGAAATTGGCTGAGCC 228
Query 247 TACGAAGACTGC-GATATACAACAGAGATGGGTTGCTTGATAAGCTTCAAGATATTAGCT 305
|||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 229 TACGAAGACTGCTG-TATACAACAGAGATGGGTTGCTTGATAAACTTCAAGATATAAGCT 287
Query 306 GGCCTGAAGATGTTGATTGGACTCATAAGCTTACTGTTGAGATTGACCAGGGAGGAGCTG 365
||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 288 GGCCTGAAGATGTTGATTGGACTCATAAGCTAACTGTTGAGATTGATCAGGGACAAGCTG 347
Query 366 TGGATGTAAACGATGACCTTGCGAGAGAGACGGCGTTCTACACTCAAGCGCTTGAAGGGA 425
||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||
Sbjct 348 TGGATGTGAACGATGACCTTGCGAGGGAGATGGCGTTCTATACTCAAGCTCTTGAAGGGA 407
Query 426 CAAGAGAAGCGTTTGGTAAACTCAATGAAATGGGTGTGAATTTTCTCAGGCCTGCGAATT 485
| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 408 CGAGAGAAGCGTTTGGGAAACTCAATGAAATGGGTGTGAATTTCCTCAGGCCGGCGAATT 467
Query 486 ACTATGCGGAGATGGTGAAATCGGATGTTCATATGGAGAAAGTGAAGTCTCGGCTTTTGC 545
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 468 ACTATGCTGAGATGGTGAAATCGGATATTCATATGGAGAAAGTGAAGTCTCGGCTTTTGC 527
Query 546 ATGAGAAGAAACAGATTGAGGAGTCTGAAGAGAGGAGGAAGGCTAGGGATAATAAGAGAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ATGAGAAGAAACAGATTGAGGAGTCTGAAGAGAGGAGGAAGGCTAGGGATAATAAGAGAA 587
Query 606 TGGCTAAGGAAGTACAGTCTCAGAAGATGAAGGAACGTGCGAAGGAGAAGAAGGATAACA 665
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 588 TGGCTAAGGAAGTACAGTCTCAGAAGATGAAGGAACGTGCGAAGCAGAAGAAGGATGATA 647
Query 666 TTGAGTCTGTGAAGAAGTGGAGGAAACAGAGGCAGCAGAGTGGGTTTAGTGATAAAGCTG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 648 TTGAGTCTGTGAAGAAGTGGAGGAAACAGAGGCAGCAGAGTGGGTTTAGTGATGAAGCGG 707
Query 726 GTGAGCCTGAACTTGATTTCGAAAGTGGAAAGAGTTTCCAGAGAGGAGGAGGTAAGAAAA 785
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 708 GTGAGCCTGAACTTGATTTTGAAAGCGGAAAGAGTTTCCAGAGAGGAGGAGGTAAGAAAA 767
Query 786 GACCAGGTGTGTCTCCCGGAGATCGATCAGGAGGTAAAGGAAGGCCTACTTCGAGGATGG 845
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 768 GACCAGGTGTTTCTCCCGGGGATCGATCAGGAGGCAAAGGAAGGCCTACTTCGAGGATGA 827
Query 846 GCAACAAGAAGAGGGAGTTTCGGGATTCCAAGTTTGGTCATGGTGGTAGGAAGGGTTTGA 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GCAACAAGAAGAGGGAGTTTCGGGATTCCAAGTTTGGTCATGGTGGTAGGAAGGGTTTGA 887
Query 906 GCAAGCAGAACACAGCAGAGACGACAAACGATTTCAAAGGCGG-TTTCCGTGGTGGAAAA 964
|||||||||||||||||||||| ||||| ||||||| ||||| |||| ||||||||| |
Sbjct 888 GCAAGCAGAACACAGCAGAGACAACAAATGATTTCAGGGGCGGATTTC-GTGGTGGAAGA 946
Query 965 GCTAGCGGAAACAA---GAGGCAGAAGAGGTAAAAGGTTTGATTATCTAAACCCACTTCA 1021
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GCCGGCGGAAACAACAAGAGGCAGAAGAGGTAAAAGGTTTGATTATCTAAACCCACTTCA 1006
Query 1022 AAACTACTATAAACTATTTGTCTTCTTTGttttttttAAGAACATGTATTTTGTTTTGGA 1081
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1007 AAACTACTATAAACTATTTGTCTTCTGGGTTTTTTT-AAGAACATGTATTTTGTTTTGGG 1065
Query 1082 AACCCTGTGGTAAGGGTCTTAGAACCAATACAATTTTGTACTAGTGATTACTTGAATTAA 1141
|||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1066 AACCCTGTAGAAAGGGTTTTAGAACCATTACAATTTTGTACTAGTGATTACTTGAATTAA 1125
Query 1142 CAAAG 1146
|||||
Sbjct 1126 CAAAG 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5