BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G22680.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905301 jgi|Araly1|905301|Al_scaffold_0003_2429                    760    0.0  


> Ahg905301 jgi|Araly1|905301|Al_scaffold_0003_2429
Length=504

 Score =  760 bits (411),  Expect = 0.0
 Identities = 477/508 (94%), Gaps = 8/508 (2%)
 Strand=Plus/Plus

Query  78   ATGCAAAGCTCAATGACAATGGAACTACGACCATCAGGTGATTCCGGTTCATCTGACGTC  137
            |||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct  1    ATGCAAAGCTCAATGACATTGGAGCTACGGCCATCAGCTGATTCCGGTTCATCTGACGTC  60

Query  138  GATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATACTTCTCACAGAGACGTCGCTGAT  197
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   GATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATAATTCTCACAGAGACGTCGCTGAT  120

Query  198  GAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGACTACATGAAGCAAGTACCAATC  257
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  121  GAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGAGTACATGAAACAAGTACCAATC  180

Query  258  CCGACGAATCGTGGCTCGTTGATTCCGTTCACAAGCTGGGTTGGATTAAGCATTTCAATG  317
            |||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct  181  CCGACGAATCGTGGCTCGTTGATTCCGTTCACGAGTTGGGTTGGTTTAAGCATCTCAATG  240

Query  318  AAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGAT  377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGAT  300

Query  378  CAATCACGATTCGGTACTGATTCTGAAGAACAGAGGTTGGATTCTATCATTCATCC-TAC  436
            ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| | |
Sbjct  301  CAATCACGATTCGGTACTGATTCTGAAGAACAGAGTTTGGATTCAATCTTTCATCCGT-C  359

Query  437  TAAAGCTGAAGCTACTATCTGGCTTGTTGAAGAGATTCATCGACTCACT-CCTTCTCATC  495
            ||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||| ||||||
Sbjct  360  TAAAGCTGAAGCTACCATCTGGCTTGTTGAGGAGATACATCGAATCACTTCCT-CTCATC  418

Query  496  TTCACATGGCTCTTCTTTGGAGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCT  555
            ||||||| |||  ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  419  TTCACATTGCTAGTCTCTGGGGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCT  478

Query  556  TTCCTGAGAAAT-GAA-CAAGTTCTTGA  581
            ||||| | |||| ||| |||||||||||
Sbjct  479  TTCCT-A-AAATTGAAACAAGTTCTTGA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5