BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22720.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 1282 0.0
Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 850 0.0
Ahg930217 jgi|Araly1|930217|scaffold_302674.1 470 1e-131
Ahg930838 jgi|Araly1|930838|scaffold_303295.1 274 1e-72
Ahg930828 jgi|Araly1|930828|scaffold_303285.1 191 1e-47
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 1282 bits (694), Expect = 0.0
Identities = 913/1014 (90%), Gaps = 33/1014 (3%)
Strand=Plus/Plus
Query 1 ATGTCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTCTAGGGTTCCCGCCACATCT 60
||||| |||||||||||||||||||||||| |||||||| | |||||||| |||||||||
Sbjct 24 ATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCACATCT 83
Query 61 CTCAAACGACTACGATCGACTTGTAGACGATGGAACGCTTTATTGAAAGACCGAAGATTC 120
|||||||| ||||||||||||||||||||||| |||||||||| ||||||| || ||||
Sbjct 84 TTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTATTAAAAGACCAAAAATTC 143
Query 121 ACCGAGAAACACTTTCATAAAGCACCAAAGGAGTCTA-GAGTTCTCATGTTGAAAGAGTA 179
|| ||||| |||| || |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 144 ACTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCTATG-GTTCTCATGTTGAAAGAGTA 202
Query 180 TAGGGTTTTTCCAATAAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTTTAAAGG 239
|||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 203 TAGGGTTTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAAGG 262
Query 240 TGCACTTGGTTATTCCCATTCTAATTCAGAACAAGTCGTGATAACCGAAGTTTTTCACTG 299
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 263 TGCACTTGGTTATTCCCATTCTAGTTCAGAACAAGTCGAGATAACCGAAGTTATTCACTG 322
Query 300 CGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGGTTTGGAATCCGTGTTT 359
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 323 CGATGGTTTGTTGTTATGCACCACCAATGACAATAGACTCTTGGTTTGGAATCCGTGTTT 382
Query 360 GGGGGAAACCAAATGGATCCAACTCAAAGTTGATTACCGGAGATACGT-CTCCATATTTG 418
|||||||||||| || ||||||||||||||||||||| ||||| || | ||||| ||||
Sbjct 383 GGGGGAAACCAAGTGTATCCAACTCAAAGTTGATTACGGGAGAAAC-TACTCCAGCTTTG 441
Query 419 CTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAAAATCTTGTGGACTTGGT 478
||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 442 CTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTGTGGAGTTGG- 500
Query 479 A-TAGTTACGATTAC-AATTCATCACCGCCAC-AAAGAGGTTTGGGGTTTGAAATATACG 535
| |||| | |||||| || ||||||||||| | |||||||||||||||||||||||||||
Sbjct 501 AGTAGTAAAGATTACGAA-TCATCACCGCC-CGAAAGAGGTTTGGGGTTTGAAATATACG 558
Query 536 AGTTTAGCTCTGATTCATCATGGAGGGTTCTTGATGACGTCAATCACGACTCCGTCGTCA 595
|||||||||||||||||| ||||||||||||||||| | |||||||||||| | ||||
Sbjct 559 AGTTTAGCTCTGATTCAT---GGAGGGTTCTTGATGACATTAATCACGACTCCTTGGTCA 615
Query 596 ATCACAACTCCATAATAAGAAGTGGCGTGTCTTTGAAGGGAAATACTTA-TATGCTT-GC 653
| ||||||||| || || ||||||||||||||||||||||||||||||| | || || ||
Sbjct 616 AGCACAACTCCGTATTAGGAAGTGGCGTGTCTTTGAAGGGAAATACTTACT-TG-TTCGC 673
Query 654 TTATGATATTGAAGAAAATTCTAAATTTTTACTAATGTTTGATTTTACAACAGAGCGATT 713
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 674 GTATGATGTTGAAGAAAATTCTAGATTTTTACTTATGTTTGATTTTACAACAGAGAGATT 733
Query 714 GAAACGTCTATGCCTTCCGCATTTCCAAGATGTTGGTGAAATGGATCTATC--T-GTTAG 770
||||||||||||||||||||||||||||||||||||| | |||| |||||| | |||||
Sbjct 734 GAAACGTCTATGCCTTCCGCATTTCCAAGATGTTGGTCACATGGTTCTATCAGTTGTTAG 793
Query 771 AGAAGAACAACTCTCAGTATTGA-ATTGGAGC-CGTATTACATCAAAGATGGAGATATGG 828
||||||||| |||||| |||| | |||||| | |||| ||||||||||||||||||||||
Sbjct 794 AGAAGAACACCTCTCAATATT-ACATTGGA-CTCGTACTACATCAAAGATGGAGATATGG 851
Query 829 ATAACCAATAACTTTGATACTGAAGCTACATTGTTGTGGAAAAGAGTGCACTTAGACAGT 888
|||||||||||| |||| ||||| |||||||||||||||| || |||||||| ||| |
Sbjct 852 ATAACCAATAACATTGACACTGATGCTACATTGTTGTGGA---GACTGCACTTACACACT 908
Query 889 CAATGTAATTGTGTTCGAATCTTCTCAAGTCTAT-ATTTCGACGAGGAGAAGAAAGTCGT 947
| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 909 CGCTGTAATTGTGTTCGAATCTTCTCAAGTCTATTAAT-CGACGAGGAGAAGAAAGTCGT 967
Query 948 CTTGTATTGTAATGTTAAAGATGGTGAGACCAGCAAGAA-AGTGG-TAT-ACAT 998
||||| |||||||||||| |||| |||||| |||||||| | ||| ||| ||||
Sbjct 968 CTTGTGTTGTAATGTTAATGATGATGAGACTAGCAAGAACA-TGGATATTACAT 1020
> Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173
Length=972
Score = 850 bits (460), Expect = 0.0
Identities = 595/658 (90%), Gaps = 17/658 (3%)
Strand=Plus/Plus
Query 7 GATCTTCCTTTAGATTTGGTAGAGAAAATACTCTCTAGGGTTCCCGCCACATCTCTCAAA 66
||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||
Sbjct 10 GATATTCCTTTAGATTTGGTAGAGGAAATACTATCTAGGGTTCCAGCCACATCTTTCAAA 69
Query 67 CGACTACGATCGACTTGTAGACGATGGAACGCTTTATTGAAAGACCGAAGATTCACCGAG 126
||| ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 70 CGATTACGATCGACTTGCAGACGATGGAACGCTCTATTGAAAGACCCAAGATTCACCGAG 129
Query 127 AAACACTTTCATAAAGCACCAAAGGAGTCTA-GAGTTCTCATGTTGAAAGAGTATAGGGT 185
|| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 130 AAGCACTTTCTTAAAGCACCAAAGGAGTCTATG-GTTCTCATGTTGAAAGAGTATAGGGT 188
Query 186 TTTTCCAATAAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTTTAAAGGTGCACT 245
|| ||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||
Sbjct 189 TTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTCAAGGTGCACT 248
Query 246 TGG--T---T-ATTCCCATTCTAATTCAGAACAAGTCGTGATAACCGAAGTTTTTCACTG 299
||| | | |||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 249 TGGCCTAAATGATTCTCATTCTAATTTAGAACAAGTCAAGATAACCGAAGTTTTTCACTG 308
Query 300 CGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGGTTTGGAATCCGTGTTT 359
| ||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||
Sbjct 309 CAATGGTTTGTTGTTATGCACCACCAAGGACAATACACTCTTGGTTTGGAATCCGTGTTT 368
Query 360 GGGGGAAACCAAATGGATCCAACTCAAAGTTGATTACCGGAGATACGTCTCCATA-TTTG 418
|||||||||||| ||||||||||||||||| |||||| ||||| ||| ||||| | |||
Sbjct 369 GGGGGAAACCAAGTGGATCCAACTCAAAGTAGATTACGGGAGAAACGGCTCCA-AGTTTT 427
Query 419 CTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAAAATCTTGTGGACTTGGT 478
||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 428 CTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTGTGGAGTTGGT 487
Query 479 ATAGTTACGATTACAATTCATCACCGCCACAAAGAGGTTTGGGGTTTGAAATATACGAGT 538
||||||| |||||||| ||||||||||| |||| || |||||||||||||||||||||||
Sbjct 488 ATAGTTATGATTACAAATCATCACCGCCCCAAATAGTTTTGGGGTTTGAAATATACGAGT 547
Query 539 TTAGCTCTGATTCATCATGGAGGGTTCTTGATGACGTCAATCACGACTCCGT-CGTCAAT 597
|||| |||||||||| ||||||||||||||||||||||||| |||||| | | |||||
Sbjct 548 TTAGTTCTGATTCAT---GGAGGGTTCTTGATGACGTCAATCATGACTCCTTAC-TCAAT 603
Query 598 CACAACTCCATAATAAGAAGTGGCGTGTCTTTGAAGGGAAATACTTA-TATGCTTGCT 654
||||||||||||||| ||| |||||||||| |||||||||||||||| | ||||||||
Sbjct 604 CACAACTCCATAATAGGAACTGGCGTGTCTCTGAAGGGAAATACTTACT-TGCTTGCT 660
Score = 364 bits (197), Expect = 6e-100
Identities = 272/305 (89%), Gaps = 17/305 (6%)
Strand=Plus/Plus
Query 705 AGAGCGATTGAAACGTCTATGCCTTCCGCATTTCCAAGATGTTGGTGAAAT-GGATCTAT 763
|||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 672 AGAGAGATTGAAACGTCTATGCCTTCCGCATTTCCAAGATGTTGGT-AACTTGGATCTAT 730
Query 764 C--T-GTTAGAGAAGAACAACTCTCAGTATTGAATTGGAGCCGTATTACATCAAAGATGG 820
| | |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 731 CAGTTGTTAGAGAAGAACAACTCGCAGTATTGAATTGGAGCCGTACTACATCAAAGATGG 790
Query 821 AGATATGGATAACCAATAACTTTGATACTGAAGCTACATTGTTGTGGAAAAGAGTGCACT 880
|||||||||||||||||||| |||||||||| |||||||||||||||| || | ||||
Sbjct 791 AGATATGGATAACCAATAACATTGATACTGATGCTACATTGTTGTGGA---GACTACACT 847
Query 881 TAGACAGTCAATGTAATTGTGTTCGAATCTTCTCAAGTCTAT-ATTTCGACGAGGAG-A- 937
|||||| || ||||||||||||||||||||||||||||||| | | |||||||||| |
Sbjct 848 TAGACACTCGCTGTAATTGTGTTCGAATCTTCTCAAGTCTATTAAT-CGACGAGGAGGAG 906
Query 938 A-GAAAGTCGTCTTGTATTGTAATGTTAAAGATGGTGAGACCAGCAAGAA-AGTGG-TAT 994
| |||||||||||||| |||||||||||| |||| |||||| |||||||| | ||| |||
Sbjct 907 AAGAAAGTCGTCTTGTGTTGTAATGTTAATGATGATGAGACTAGCAAGAACA-TGGATAT 965
Query 995 -ACAT 998
||||
Sbjct 966 TACAT 970
> Ahg930217 jgi|Araly1|930217|scaffold_302674.1
Length=1162
Score = 470 bits (254), Expect = 1e-131
Identities = 839/1101 (76%), Gaps = 122/1101 (11%)
Strand=Plus/Plus
Query 1 ATGTCGGATCTTCCTTTAGATTTGGTAG-AGAAAATACTCTCTAGGGTTCCCGCCACATC 59
||||| |||||||| |||||||||| || |||||||||||||| |||| ||||||||
Sbjct 27 ATGTCCGATCTTCCCCGCGATTTGGTAGAAG-AAATACTCTCTAGGATTCCGGCCACATC 85
Query 60 TCTCAAACGACTACGATCGACTTGTAGACGATGGAACGCTTTATTGAA-AGACCGAAGAT 118
| | |||||| ||||||| ||||| | || ||||||| ||||||| || | |||||| ||
Sbjct 86 TGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACA-ACCGAAAAT 144
Query 119 TCACCGAGAA-ACACTTTCATAAAGCACCAAAGGAGTCTA-GAGTTCTCATGTTGAAAGA 176
|||| ||||| | |||||| |||||| ||||||||||||| | |||||||||||||| ||
Sbjct 145 TCACTGAGAAGA-ACTTTCGTAAAGCTCCAAAGGAGTCTATG-GTTCTCATGTTGAAGGA 202
Query 177 GTATAGGGTTTTTC-CAATAAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTTTA 235
|| ||||| || | |||| |||||||||||||| ||| ||||||||||| |||| ||||
Sbjct 203 GTGTAGGG-TTCGCTCAATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAGAGTTTA 261
Query 236 AAGGTGCACTTGG--T----TATTCCCATTCTAATTCAGAACAAGTC-GTGATAACCGAA 288
||||||||||||| | |||| ||||||||| | ||||||||| | |||||| ||
Sbjct 262 AAGGTGCACTTGGCCTGAAGGATTCTCATTCTAATACCGAACAAGTCAAT-ATAACCAAA 320
Query 289 GTTTTTCACTGCGATGGTTTGTTGTTATGCACCACC-AATGACGATAGACTCGTGGTTTG 347
|||| |||||| |||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 321 GTTTCTCACTGTGATGGTTTGTTGTTATGCACCACCGGA-GACGATAGACTTGTGGTTTG 379
Query 348 GAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGTTGATTACCG-GAGATACG 406
||||||||||||||||||||||| |||||||||| |||| || |||| | |||||||
Sbjct 380 GAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACACAAAACTGGTTAC-GAGAGATAC- 437
Query 407 TCTCCATATTTGCTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAAAATCT 466
||| | ||| || |||||||| |||||||| |||| ||||||||||| |||||||
Sbjct 438 TCTAGGT-TTT-CTTTAGGGTATG---AAAACAACAAATCTTGCCGTAGCTACAAAATCT 492
Query 467 TGTGGAC-TTGGTA---TAGTTACGATTACAATTCATCACCGCCACAAAGAGGTTTGGGG 522
|| ||| |||| | || |||||||||||| | | | || | | ||||||| ||
Sbjct 493 TG-GGATGTTGGGACCGTATTTACGATTACAAA-C-TAAACGGC-C---GAGGTTTAAGG 545
Query 523 TTTGAAATATACGAGTTTAGCTCTGATTCATCATGGAGGGTTCTTGATGACGTCAATCAC 582
|||||||| || || ||| ||||||||||| ||| |||||||||||| || |||
Sbjct 546 TTTGAAATCTATGACATTAACTCTGATTCAT---GGAAAGTTCTTGATGACCTCGCTCAT 602
Query 583 GACTCCGTCGTCAATCACAACTCCATAATAAGAAGTGGCGTGTCTTTGAAGGGAAATACT 642
||| | || | || | || | ||| | || ||||||||| |||||||| |||
Sbjct 603 GAC-C--TC---A-TC-CTAC-CGGTAA-AT----TG-CGTGTCTTTAAAGGGAAACACT 647
Query 643 TATATGCTT-GCTTATGATATTGAAGAAAATTCTAAATTTTTACTAATGTTT-GATTTTA 700
|| || || | || | | ||| | || | || || ||||| | |||| |||||||
Sbjct 648 TAC-TGGTTTGGTTCT--T-TTGTA-AA----C-AACTTATTACTTA-GTTTTGATTTTA 696
Query 701 CAACAGAGCG-ATTGAAACGTCTATGCCTTCCGC-ATTTCCAAGATGTTGGTGAAATGGA 758
|||| ||| | ||| |||| | | || ||||||| ||||| ||| |||| ||||
Sbjct 697 CAACTGAGAGGATT-AAACATTTTTGTCTTCCGCCATTTCGG-GATCATGGTTTTATGGC 754
Query 759 TCTATC--T-GTTAGAGAAGAACAACTCTCAGTATTGA-ATTGGAGCCGTATT-ACA--T 811
|||||| | ||| ||||||||| ||| ||||| || | | | ||| ||| | | |
Sbjct 755 TCTATCAGTTGTTGGAGAAGAACGACTATCAGTGTT-ACA----A-CCG-ATTGAGAGAT 807
Query 812 CAAAGATGGAGATATG-GATAACCAATAACTTTGATACTGAAGCTACATTGTTGTGGAA- 869
||||||||||||||| | || ||||||| |||||| |||||| | ||||||||||
Sbjct 808 CAAAGATGGAGATATTTGTTA-CCAATAAAGTTGATAGTGAAGCGGCTTTGTTGTGGAGC 866
Query 870 AAGAGTGCACTTAGACAGTCAATGTA---ATTG---T--GTT--C--GAA-TCTTCTCAA 916
|| | | | ||| ||||| || || |||| | ||| | || | ||| | |
Sbjct 867 AA-A-T-C-CTTT-ACAGTGGATTTACCCATTGGGCTTAGTTTTCCTGAGGTTTTCGCGA 921
Query 917 GTCTAT-ATTTCGACGAGGAGAAGAAAGTCGTCTTGTATTGTAATGTTAAAGATGGTGA- 974
|||| | | || ||||||||||||||||| | ||||| ||||||| ||| | | |||
Sbjct 922 GTCTTTTAATT-GACGAGGAGAAGAAAGTTGCCTTGTGTTGTAAT-TTA--GCTC-TGAA 976
Query 975 GACCAGCAAGAAAGTGGTATACATTATCGGAGAGGAC-GATGGACATTACAT-AGAAATC 1032
|||| ||| ||| ||||||||| ||| ||||||||| | || | ||||| | |||||||
Sbjct 977 GACCGGCAGGAACTTGGTATACACTATTGGAGAGGACAG-TGAATATTAC-TCAGAAATC 1034
Query 1033 CCTT-TCGTAAAATCTATAAA 1052
|||| | ||| |||||| |||
Sbjct 1035 CCTTAT-GTAGAATCTACAAA 1054
> Ahg930838 jgi|Araly1|930838|scaffold_303295.1
Length=1166
Score = 274 bits (148), Expect = 1e-72
Identities = 386/495 (78%), Gaps = 39/495 (8%)
Strand=Plus/Plus
Query 4 TCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTCTAGGGTTCCC-GCCACATCTCT 62
|||||||| ||| ||||| ||||| ||||||||| ||| | |||| ||||||||||
Sbjct 31 TCGGATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAG-TCCCAGCCACATCTCA 89
Query 63 CAAACGA-CTACGATCGACTTGTAGACGATGGAACGCTTT-AT--TGAAAGACCGAAGAT 118
||||| | || |||| ||||| | || |||||||| ||| || |||| |||||||||
Sbjct 90 CAAAC-AGTTAAGATCTACTTGCAAACTATGGAACGTTTTAATAAAGAAAAACCGAAGAT 148
Query 119 TCACCGAGAAA-CACTTTCATAAAGCACCAAAGGAGTCTAG-AGTTCTCATGTTGAAAGA 176
||||||| ||| |||||||| |||| ||||| |||| || || || |||||| | ||
Sbjct 149 TCACCGA-AAAGCACTTTCACGAAGCTTCAAAGCAGTC-AGCGGTACTGATGTTGGATGA 206
Query 177 GT-ATAGGGTT-TTTCCAAT-AAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTT 233
| || |||| || |||| || ||| |||||||| ||| || |||||||| |||| ||
Sbjct 207 -TCGTAAGGTTCGTT-CAATGAA-CGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTT 263
Query 234 TAAAG-GTGCACTT-G-GT----TATTCCCATTCTAATTCAGAACAAGTCGTGATA-ACC 285
| ||| |||||||| | | |||| |||||||||| ||||||||| | ||| | |
Sbjct 264 T-AAGAGTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT--TAATATAGC 320
Query 286 GA-AGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGGT 344
| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 321 TAGAGTTTTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGGT 380
Query 345 TTGGAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGT-TGATTACCGGAGAT 403
||||||||||| ||| |||| ||||| ||||||||||||||| | |||||| |||
Sbjct 381 TTGGAATCCGTATTTTGGGGTAACCAGGTGGATCCAACTCAAA-TCTGATTATAAGAGCG 439
Query 404 ACGTCT-CCATATTTGCTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAAA 462
|| | | || ||| |||||||| ||| | | | ||| |||| || |||| ||| |||
Sbjct 440 ACTT-TACC-TAT--GCTCTAGG--ATA-CGTAGATAACAAATCTTGTCGTACCTACAAA 492
Query 463 ATCTTGTGGACTTGG 477
|||||| || |||||
Sbjct 493 ATCTTGAGGCCTTGG 507
> Ahg930828 jgi|Araly1|930828|scaffold_303285.1
Length=1020
Score = 191 bits (103), Expect = 1e-47
Identities = 336/443 (76%), Gaps = 37/443 (8%)
Strand=Plus/Plus
Query 1 ATGTCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTC--TAGGGTTCCCG-CCACA 57
||||| |||||||| | ||||| || |||| ||| | || || | ||||| ||||
Sbjct 29 ATGTCTGATCTTCCGGTGGATTT-GT-TAGAAGATATTTTCAATA-GACTCCCGACCACG 85
Query 58 TCTCTCAAACGACTACGATCGACTTGTAGACGATGGAACGCTTTATTGAAAGACCGAAGA 117
||||| ||| |||||||||| ||||| | || |||||||| |||| | ||| | ||| |
Sbjct 86 TCTCTGAAAGGACTACGATCCACTTGCAAACTATGGAACGGTTTAAT-AAA-A-AGAA-A 141
Query 118 TTCACCGAGAAACACTTTCAT-AAAGCACCAAAGGAG--TCTAGAGTTCTCATGTTGAAA 174
| || || | |||| | |||| ||||| || ||| | |||||||| ||||
Sbjct 142 --C-CC----AAGA-TTTC-TCGAAGCTGCAAAGAAGCCTCT-G-GTTCTCATTTTGAGG 190
Query 175 GAGTATAGGGTTTTTCCAATAAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTTT 234
|| |||||||||| | ||| |||||||||| | | || || |||||||| ||| |||
Sbjct 191 GATTATAGGGTTTGGCGAATGAGCGTCAATCACGACGTCGCTGCTCCATCTAAAGAATTT 250
Query 235 AAAGGTGCACTT-G-GTTAT---TCC-CATTCTAATTCAGAACAAGTCG-TGATAACCGA 287
| ||||||||| | | || ||| |||| ||| ||| ||||||||| | ||| | |
Sbjct 251 GATGGTGCACTTAGCCTAATGGATCCACATTTTAAGTCACAACAAGTCGAT-ATAGCTGG 309
Query 288 AGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGGTTTG 347
|||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 310 CGTTTTTCACTGCGACGGTTTGTTGTTATGCACCACCGAGGACGATAGACTCGTGGTTTG 369
Query 348 GAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGTTGATTACCGGAGATACGT 407
|||||||| ||| | |||||||| |||||||||| |||| |||| || |||| || |
Sbjct 370 GAATCCGTATTTAGAGGAAACCAGGTGGATCCAACACAAAACTGATCACAAGAGAGAC-T 428
Query 408 CTCCATATTT-GCTCTAGGGTAT 429
|| | | || |||||||| |||
Sbjct 429 CT--A-AGTTAGCTCTAGGATAT 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5