BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22730.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 649 0.0
Ahg930217 jgi|Araly1|930217|scaffold_302674.1 446 2e-124
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 355 4e-97
Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 193 3e-48
Ahg930837 jgi|Araly1|930837|scaffold_303294.1 180 2e-44
Ahg930817 jgi|Araly1|930817|scaffold_303274.1 110 3e-23
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 87.9 1e-16
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 78.7 9e-14
Ahg930570 jgi|Araly1|930570|scaffold_303027.1 76.8 3e-13
Ahg930838 jgi|Araly1|930838|scaffold_303295.1 63.9 2e-09
Ahg929832 jgi|Araly1|929832|scaffold_302289.1 56.5 4e-07
Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 54.7 1e-06
> Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011
Length=1152
Score = 649 bits (351), Expect = 0.0
Identities = 611/732 (83%), Gaps = 35/732 (5%)
Strand=Plus/Plus
Query 4 ATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACA 63
|||||||| ||||| | ||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGATGTCTTATCTTCCACCGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCGGCGACA 60
Query 64 TCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCCGGGA 123
||| | | ||||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 61 TCTTTGATACGATTACGATCTACTTGCAAACTATGGAACACTTTATTTAAACACCCAAAA 120
Query 124 TTTACC-AAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTGAAGGA 182
|| || || |||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 121 TTCGCCGAA-AAGCAATTTCGTAAAGCACCAAAGGAGTCTTTTGTTCTCATGTTGAAGGA 179
Query 183 GTATAGCGTTTGTCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTC-TATAGAGTTTA 241
|||||| ||||||||||||| || |||||||| ||||||| |||| | |||||||||||
Sbjct 180 GTATAGGGTTTGTCCAATGAACGTCAATCTCAACGTTTCTCCTCCA-CATATAGAGTTTA 238
Query 242 AAGGTGCACTTAACCTAAAG-AATTATCCTCCTTATTCAGAAGAAGTCGATATACATGAA 300
| ||||||||| ||||| | ||||||||| || |||||||||| ||| |||||||||||
Sbjct 239 AGGGTGCACTTGCCCTAA-GTAATTATCCTTCTAATTCAGAAGAGGTCTATATACATGAA 297
Query 301 GCTTGTCACTGTGATGGTTTATTGCTATGTACAACTATGGACTATAGAATAGTGGTTTGG 360
| || |||||| || |||||||||||||| | ||| |||||||| ||| | |||||||||
Sbjct 298 GTTTTTCACTGCGACGGTTTATTGCTATGCAGAACCATGGACTACAGACTCGTGGTTTGG 357
Query 361 AACCCGTGTTTGGGGGAAACAAGGTGGATCCGATGGCCCAAAAACATTTACTCTAGGTTT 420
|||||||||||||| |||||||||||||||| | || ||||| | | |||||||| ||
Sbjct 358 AACCCGTGTTTGGGAGAAACAAGGTGGATCCAAA--CCGAAAAAAAGT-ACTCTAGGCTT 414
Query 421 GCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTGAGGTGTTGGGAT 480
||||||||||||||||||||||||| | || ||||||||||||||||| |||| ||||
Sbjct 415 GCTCTAGGATACGAGAAAAACAAATCTTACCATATCTACAAAATCTTGAAGTGTAGGGA- 473
Query 481 CGTCACAATTCACCA-ACTGGCCGAGTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGA 539
| | | | |||| || || | |||||||||||||||||| ||||| |||||||||||
Sbjct 474 CA--ATA-T--ACCATAC-GGTCAAGTTGATGAGTTTGAAATATATGATTTTAGCTCTGA 527
Query 540 TTCATGGAGGGTTCTTGATCTCGTCGCTCTTG-ATTGCCACATAGC-ATCACA-TATTGG 596
||||||||| ||||||||| | |||||| ||| ||||| |||| | |||| | ||||||
Sbjct 528 TTCATGGAGAGTTCTTGATGTTGTCGCT-TTGGATTGCTTCATA-CTATCA-AGTATTGG 584
Query 597 CGTTTCTTTCAAGGGAAATACTTATTGGCTTGCGTCTG-ATAAAA-AAGACAAATATGGA 654
||||||||| |||||||||||||| |||| ||| | || ||||| || || | ||| |
Sbjct 585 CGTTTCTTTGAAGGGAAATACTTACTGGCGTGCTT-TGGATAAAGTAA-ACTACTATC-A 641
Query 655 CT-CTT-G-CT-TTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC 710
| ||| | | || || ||||||||| |||| |||||||| ||| |||||||||| ||
Sbjct 642 GTTCTTAGTCAATT--TT-GATTTTACAGCAGAGAGATTTACACGTTTGTGTCTTCCGCC 698
Query 711 ATCTCAGGATGT 722
|| |||| ||||
Sbjct 699 ATTTCAGAATGT 710
> Ahg930217 jgi|Araly1|930217|scaffold_302674.1
Length=1162
Score = 446 bits (241), Expect = 2e-124
Identities = 820/1083 (76%), Gaps = 106/1083 (10%)
Strand=Plus/Plus
Query 1 ATGATGATGTCCGATCTTTCTTTG-GATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGC 59
|||||||||||||||| ||| | ||||||||||| ||||||||||||||| |||| ||
Sbjct 21 ATGATGATGTCCGATC-TTCCCCGCGATTTGGTAGAAGAAATACTCTCTAGGATTCCGGC 79
Query 60 CACATCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCC 119
||||||| | ||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 80 CACATCTGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACAACC- 138
Query 120 GGGATTT-ACCAAGAAGCAA-TTTCTTAAAGCACCAAAGGAGTC-ACTGGTTCTCATGTT 176
| | || || ||||| || |||| |||||| ||||||||||| | |||||||||||||
Sbjct 139 GAAAATTCACTGAGAAG-AACTTTCGTAAAGCTCCAAAGGAGTCTA-TGGTTCTCATGTT 196
Query 177 GAAGGAGTATAGCGTTTG-TCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTCTATAG 235
|||||||| ||| ||| | || ||||| || |||||||| |||| || |||| ||| |||
Sbjct 197 GAAGGAGTGTAGGGTTCGCTC-AATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAG 255
Query 236 AGTTTAAAGGTGCACTTAACCTAAAGAATTATCCTCCTTATTCAGAAGAAGTCGATATAC 295
||||||||||||||||| ||| ||| ||| || | || || | ||| ||||| |||||
Sbjct 256 AGTTTAAAGGTGCACTTGGCCTGAAGGATTCTCATTCTAATACCGAACAAGTCAATATA- 314
Query 296 ATGAA-GCTTGTCACTGTGATGGTTTATTGCTATGTACAACTATG-GACTATAGAATAGT 353
| || | || ||||||||||||||| ||| |||| || || | ||| ||||| | ||
Sbjct 315 ACCAAAGTTTCTCACTGTGATGGTTTGTTGTTATGCACCACCG-GAGACGATAGACTTGT 373
Query 354 GGTTTGGAACCCGTGTTTGGGGGAAACAAGGTGGATCCGATGGCCCAAAA------AC-A 406
||||||||| ||||||||||||||||| |||||||||| | | ||||| || |
Sbjct 374 GGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAA---CACAAAACTGGTTACGA 430
Query 407 TT--TACTCTAGGTTTGCTCTAGGATACGAGAAA-AACAAATATGGCCGTATCTACAAAA 463
|||||||||||| || |||| || || ||| ||||||| | |||||| ||||||||
Sbjct 431 GAGATACTCTAGGTTTTCTTTAGGGTATGA-AAACAACAAATCTTGCCGTAGCTACAAAA 489
Query 464 TCTTGAGG-TGTTGGGATCGTC---ACAATT-CAC-C-AA-CTGGCCGAG-TTGATGAGT 514
||||| || |||||||| ||| || ||| || | || | ||||||| || | | ||
Sbjct 490 TCTTG-GGATGTTGGGACCGTATTTACGATTACAAACTAAAC-GGCCGAGGTTTAAG-GT 546
Query 515 TTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTTGAT- 573
||||||||||||| ||| |||||||||||||| ||||||||| | |||||| |||
Sbjct 547 TTGAAATCTATGACATTAACTCTGATTCATGGAAAGTTCTTGATGACCTCGCTCATGACC 606
Query 574 TGCCA-CATAGCA-TCACATATTGGCGTTTCTTTCAAGGGAAATACTTATTGGCTTGCGT 631
| | | | || | | | | |||| ||| ||||| |||||||| ||||| ||| ||| ||
Sbjct 607 T-C-ATCCTACCGGT-A-A-ATTG-CGTGTCTTTAAAGGGAAACACTTACTGGTTTG-GT 659
Query 632 -CTGATAAAAA-AGACAAATATGGACTCTTGCTTTGCTTCGATTTTACAACAGAAAG-AT 688
|| | ||| | || || | ||| | | ||| | ||||||||||| || || ||
Sbjct 660 TCTTTTGTAAACA-ACTTAT-T--ACT-TAG-TTT--T--GATTTTACAACTGAGAGGAT 709
Query 689 TTACGCGTCTGTGTCTTCCACCATCTCAGGATG-TG-TCTAAGATGGCTCTATCAGTTGT 746
| | | | | |||||||| |||| || |||| || | | | ||||||||||||||||
Sbjct 710 TAAA-CATTTTTGTCTTCCGCCATTTCGGGATCATGGTTTTA--TGGCTCTATCAGTTGT 766
Query 747 TGGAGGAA-AACAACTCTCACTGTTA-AGTCAAAGTGATAGTACATCAAAGATAATGGAG 804
||||| || ||| ||| ||| ||||| | | | ||| || | |||||||| ||||
Sbjct 767 TGGAG-AAGAACGACTATCAGTGTTACAACCGAT-TGAGAG-A--TCAAAGAT---GGAG 818
Query 805 ATGTGGGTGACCAATA---TT-AT--TGAAGATG-TACTGATGTGGAGCAAATCTTTTAC 857
|| | || ||||||| || || ||||| | | || ||||||||||||| |||||
Sbjct 819 ATATTTGTTACCAATAAAGTTGATAGTGAAGCGGCTT-TGTTGTGGAGCAAATCCTTTAC 877
Query 858 CGTGGATATACCCATTCGCGG-TGATTATTGTCC-GTA--TTT--GACGAGT-TATCTAG 910
|||||| |||||||| | || | | | || ||| | | ||| | ||||| | | ||
Sbjct 878 AGTGGATTTACCCATT-G-GGCTTAGT-TT-TCCTG-AGGTTTTCG-CGAGTCTTT-TAA 930
Query 911 TCGACGAAGAAAAGAAAGTGGC-TGTGTGTTATAATGAAAATTTTGA-GAAAAGCAACAA 968
| ||||| || |||||||| || | |||||| |||| | | | || || ||| ||
Sbjct 931 TTGACGAGGAGAAGAAAGTTGCCT-TGTGTTGTAATTTAGCTCT-GAAGACCGGCAGGAA 988
Query 969 GAAAGTATACATTATTGGAGAGGACAATGGATACTACACAGAAATCCCTT-TAGTAGAAT 1027
||||||| |||||||||||||| || ||| ||| |||||||||||| | |||||||
Sbjct 989 CTTGGTATACACTATTGGAGAGGACAGTGAATATTACTCAGAAATCCCTTAT-GTAGAAT 1047
Query 1028 CTA 1030
|||
Sbjct 1048 CTA 1050
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 355 bits (192), Expect = 4e-97
Identities = 669/884 (76%), Gaps = 94/884 (11%)
Strand=Plus/Plus
Query 3 GATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCAC 62
|||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 20 GATGATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCAC 79
Query 63 ATCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAA-ACCCGG 121
|||| |||||||||||||||| ||||| | || |||| |||||||| |||||| |||
Sbjct 80 ATCTTTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTA-TTAAAAGACCAAA 138
Query 122 GATTTACCAAGAAGCAATTTCTTAAAGCACCAAAGGAGTC-ACTGGTTCTCATGTTGAAG 180
||| || ||||||| | || |||||||||||||||||| | ||||||||||||||||
Sbjct 139 AATTCACTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCTA-TGGTTCTCATGTTGAAA 197
Query 181 GAGTATAGCGTTTGTCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTCTATAGAGTTT 240
|||||||| ||||||||||| | || |||||||| |||| || |||| ||||||||||||
Sbjct 198 GAGTATAGGGTTTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTT 257
Query 241 AAAGGTGCACTTAACCTAAAGAATTATCC-TCCTTA-TTCAGAAGAAGTCGATAT-ACAT 297
|||||||||||| | ||| || | | || ||||||| ||||||| || ||
Sbjct 258 AAAGGTGCACTT--GGT----TATT-CCCATTC-TAGTTCAGAACAAGTCGAGATAAC-C 308
Query 298 GAAGCTT-GTCACTGTGATGGTTTATTGCTATGTA-CAACTATGGACTATAGAATAGTGG 355
|||| || |||||| |||||||| ||| |||| | || | || ||| ||||| | |||
Sbjct 309 GAAG-TTATTCACTGCGATGGTTTGTTGTTATGCACCACCAAT-GACAATAGACTCTTGG 366
Query 356 TTTGGAACCCGTGTTTGGGGGAAA-CAAGGTGGATCCGATGGCCCAAA----A--AC--- 405
||||||| |||||||||||||||| ||| ||| |||| | | |||| | ||
Sbjct 367 TTTGGAATCCGTGTTTGGGGGAAACCAA-GTGTATCC-A--ACTCAAAGTTGATTACGGG 422
Query 406 ---ATTTACTCTAGGTTTGCTCTAGG--ATA-CGAGAAA-AACAAATATGGCCGTATCTA 458
| ||||| || ||||||||||| ||| | | ||| ||| ||| | |||||| |||
Sbjct 423 AGAAACTACTCCAGCTTTGCTCTAGGATATATCCA-AAACAACGAATCTTGCCGTAGCTA 481
Query 459 CAAAATCTTGAGGTGTTGGGA-TCGTCACA-ATT-C--ACCA--ACTGGCCG--AGTTG- 508
|||||||||| || ||| ||| | || | | ||| | | || || | ||| || |
Sbjct 482 CAAAATCTTGTGGAGTT-GGAGTAGT-AAAGATTACGAATCATCACCGCCCGAAAGAGGT 539
Query 509 AT-GAGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT--C-TCG-T 563
| | ||||||||| || ||||||||||||||||||||||||||||||||| | | |
Sbjct 540 TTGGGGTTTGAAATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACATTAAT 599
Query 564 C--G-CTC-TTGATT--GC-CA-CATA-GCATCAC-ATATTGGCGTTTCTTTCAAGGGAA 613
| | ||| ||| | || || | | | || | | | |||||| ||||| |||||||
Sbjct 600 CACGACTCCTTGGTCAAGCACAAC-TCCGTATTAGGA-AGTGGCGTGTCTTTGAAGGGAA 657
Query 614 ATACTTA-TTGGCTT-GCGTCTGATAAAAAAGACAAATA-TGGACTCTTGCTT-TGCTTC 669
||||||| ||| || |||| |||| |||| |||| | || | || ||| || ||
Sbjct 658 ATACTTACTTG--TTCGCGTATGATGTTGAAGA-AAATTCTAGATTTTTACTTATGTTT- 713
Query 670 GATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACCATCTC-AGGATGT-G-TCT 726
|||||||||||||| ||||| | ||||| || ||||| | || || | ||||| | ||
Sbjct 714 GATTTTACAACAGAGAGATTGAAACGTCTATGCCTTCCGC-ATTTCCAAGATGTTGGTC- 771
Query 727 AAGATGGCTCTATCAGTTGTTGGAGGAA-AACAACTCTCACTGTTA-AGTCAAAGT-GAT 783
| |||| ||||||||||||| ||| || |||| |||||| | ||| | | | | | |
Sbjct 772 AC-ATGGTTCTATCAGTTGTTAGAG-AAGAACACCTCTCAATATTACATTGGAC-TCG-T 827
Query 784 AGTACATCAAAGATAATGGAGATGTGGGTGACCAATATTATTGA 827
| |||||||||||| |||||| ||| | ||||||| |||||
Sbjct 828 ACTACATCAAAGAT---GGAGATATGGATAACCAATAACATTGA 868
> Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703
Length=1092
Score = 193 bits (104), Expect = 3e-48
Identities = 235/296 (79%), Gaps = 18/296 (6%)
Strand=Plus/Plus
Query 1 ATGATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCC 60
|||||||||||||||||| || ||| || |||| ||||||||||||||||||||||||
Sbjct 1 ATGATGATGTCCGATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCC 60
Query 61 ACATCTCT-CAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCC 119
|||| | | ||| ||| |||||||||||||||||| |||||||| ||| || ||| ||
Sbjct 61 ACATGTTTGCAA-CGAGTACGATCTACTTGCAAACGATGGAACGATTTGTTCAAAGAC-- 117
Query 120 GG--GATTTACCAAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTG 177
|| |||| || ||||||| |||| |||||| ||||||||| || | |||||||||
Sbjct 118 GGAAGATTCACGGAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTTGATACTCATGTTG 177
Query 178 AAGGAG-T-ATAGCGTTTG-TCCAAT-GATCGCCAATCTCAGCGTTTCTGCTCCGTCTAT 233
|||||| | | | | |||| || ||| | || |||||||| | |||| |||| ||| |
Sbjct 178 AAGGAGCTTAAA-C-TTTGCTC-AATCGG-CGTCAATCTCAACTTTTCACCTCCATCTGT 233
Query 234 AGAGTTTAAAGGTGCACTTAACCTAAA-GAATTATCCTCCTTA-TTCAGAAGAAGT 287
||||||| ||||| ||||| ||||||| || || || || || ||||||| ||||
Sbjct 234 AGAGTTTCAAGGTACACTTGACCTAAAAGA-TTC-CCACCCTAATTCAGAACAAGT 287
Score = 145 bits (78), Expect = 8e-34
Identities = 184/232 (79%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 409 TACTCTAGGTTTGCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTG 468
||||||||||||||||||||||||||||| ||||||| | || ||| ||||||| |||||
Sbjct 349 TACTCTAGGTTTGCTCTAGGATACGAGAACAACAAATCTTGCAGTAGCTACAAATTCTTG 408
Query 469 AGGTGTTGGGATCGTCACAATT-CACCAACT-GGC--CGA-GTTG-A-T---GAG-TTTG 517
| |||||||| | || || || || |||| ||| ||| | | | | | | ||||
Sbjct 409 ATGTGTTGGGTTTGTTACGATGGCA--AACTAGGCGACGAAGACGGAGTTTTGGGGTTTG 466
Query 518 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCT-CTTGATTGC 576
||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 467 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCTTCC-GACTGC 525
Query 577 CACATAGCATCA-CATATTGGCGTTTCTTTCAAGGGAAATACTTATTGGCTT 627
| |||| || || ||||| ||||| ||||||||| |||| ||||||
Sbjct 526 TT--TC-CATCTGCAAAT-GGCGTGTCTTTGAAGGGAAATGCTTACTGGCTT 573
Score = 62.1 bits (33), Expect = 9e-09
Identities = 36/37 (97%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 1054 ATT-ATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1089
||| |||||||||||||||||||||||||||||||||
Sbjct 1017 ATTCATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1053
> Ahg930837 jgi|Araly1|930837|scaffold_303294.1
Length=702
Score = 180 bits (97), Expect = 2e-44
Identities = 405/548 (74%), Gaps = 44/548 (8%)
Strand=Plus/Plus
Query 239 TTAAA-GGTGCACTTAACCT-AAAGAATTATCC-TCCTTATTC-AGAAGAAGTCGATATA 294
||||| ||| |||||| | | |||| ||| ||| | | |||| | || ||||| | |||
Sbjct 149 TTAAAGGGTTCACTTAGCTTAAAAG-ATT-TCCATTATAATTCTA-AACAAGTCAAGATA 205
Query 295 -CATGAAGCTTGTCACTGTGATGGTTTATTGCTATGTA-CAACTATGGACT-ATAGAATA 351
| | || || |||||| |||||||||||| |||| | | || | ||| | ||||| |
Sbjct 206 GCCCG-AGTTTTTCACTGCGATGGTTTATTGTTATGCATC-ACCAAGGA-TGATAGACTC 262
Query 352 GTGGTTTGGAACCCGTGTTTGGGGGAAACA-AGGTGGATCCGA-T--GGCCCAAAAAC-A 406
||||||||||||||||||||||| |||| | |||||||||| | | | | | || |
Sbjct 263 GTGGTTTGGAACCCGTGTTTGGGAGAAA-ATAGGTGGATCCCACTCAGAACTGATTACAA 321
Query 407 TTTACT--CTAGGTTTGCTCTAGGATACGAGAAA-AACAAATATGGCCGTATCTACAAAA 463
| | ||| |||||||||||||||| | ||| ||||||| | | | || ||||||||
Sbjct 322 GGGAATAACTATGTTTGCTCTAGGATACCA-AAATAACAAATCTTGTCATAGCTACAAAA 380
Query 464 TCTTGAGGTGTTGGGATCGTCACAATTCACCAACTGGCCGA-GTTGATGAGTTTGAAATC 522
|||||||||| ||| || || || |||||| || | |||| || ||| ||||||
Sbjct 381 TCTTGAGGTGGTGGAATTGT---TATGAACCAACCCACC-ATGTTGTTGGGTTAGAAATC 436
Query 523 TATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTTGATTGCCACATA 582
|||||||||||||||||||||||||| ||| ||||| |||| ||| |||| | | ||
Sbjct 437 TATGAGTTTAGCTCTGATTCATGGAGAGTTTTTGATAAAGTCGATCTCGATTTCTATTTA 496
Query 583 GCATCACATATTGGCGT-T-TCTTTCAAGGGAAATACTTATTGGCTTGCGTCT-GATAAA 639
|| ||| ||| || | ||||| |||||||||||||| |||||| | | | |||
Sbjct 497 -CAA-ACAAATTCTTGTGTGTCTTTGAAGGGAAATACTTACTGGCTTACTT-TAGATCTT 553
Query 640 AAAGACAAATATGGACTCTTGCTTTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTG 699
| || ||| | |||| | | || |||||||||| || ||||||| ||| ||
Sbjct 554 AGTGA-AAAG-T----TCTTCCACAGTTTTGATTTTACAAGGGAGAGATTTAAACGTTTG 607
Query 700 TGTCTTCCACCATCTCAGGA-T-GTGTCTAAGATGGCTCTATCAGTTGTTGGAGGAAAAC 757
|||||||||||| || | | | |||| || | || ||||||||||||| ||| |||||
Sbjct 608 TGTCTTCCACCAAATCCGAAATCGTGT-TAT-ACGGTTCTATCAGTTGTTAGAGAAAAAC 665
Query 758 AACTCTCA 765
| ||||||
Sbjct 666 AGCTCTCA 673
> Ahg930817 jgi|Araly1|930817|scaffold_303274.1
Length=1060
Score = 110 bits (59), Expect = 3e-23
Identities = 332/452 (73%), Gaps = 66/452 (15%)
Strand=Plus/Plus
Query 670 GATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC-ATCTCAGGATGTGTCTAA 728
|||||||||||||| ||||||| ||| ||| |||||| || || | || || || |
Sbjct 609 GATTTTACAACAGAGAGATTTAAACGTGTGTATCTTCCGCCAAT-TGAGAATTTGGATTG 667
Query 729 GATGGCTCTATCAGTTGTTGGAGGAA-AACAACTCTCACTGTTAAGT-C--AAAGTGATA 784
|| | ||||||| ||||| || ||| || |||||||| |||||| | | |||| | ||
Sbjct 668 GAAGATTCTATCAATTGTTAGA-GAAGAAGAACTCTCAGTGTTAA-TACAGAAAGAG-TA 724
Query 785 GTACATCAAAGATAATGGAGATGTGGGTGACCAATATTATTG-AA--GATG-TA-C-TGA 838
|||||||||| |||||||| |||||| |||||| ||||| || || | | | ||
Sbjct 725 -TACATCAAAG---ATGGAGATTTGGGTGGCCAATAATATTGAAACTGAAGCCACCTTG- 779
Query 839 T-GTGG-AGCAAATCTTTTACCGTGGATATACCCATTCGCGGTGA---T--T-ATTGT-C 889
| ||| || ||||| ||||| |||||||||| |||||| | | | | ||| | |
Sbjct 780 TCATGGAAG-AAATCCTTTACTGTGGATATACGAATTCGCACTAATTCTCATAATTATAC 838
Query 890 CGTATTTGAC-GAG-TTATCTAG-TCGACGAAGAAAAGAAAGTGGCT-GTGTGTTATAAT 945
| |||| | || || ||| | |||| || || |||||||||| | ||||||| ||||
Sbjct 839 AG--TTTGCCATAGCTT-TCT-GATCGAGGAGGAGAAGAAAGTGG-TCGTGTGTTGTAAT 893
Query 946 GAAAATTTTGAGAA--AAG-CAACAAGAAAGTATACATTATTGGAGAGGACAATGGA-TA 1001
| ||| | ||| | | || || | | || ||||||||||||||||| || || ||
Sbjct 894 G-AAA----G-GAATTATGACATCATG--A-TAGACATTATTGGAGAGGACGAT-GACTA 943
Query 1002 CTACACAGAAA-TCCCTTTAGTAGAATCTAGTTACCAAGTGTGG--G-GATATCCAAT-T 1056
|||||| ||| ||||||| ||| || |||| | || ||| | | | ||| || |
Sbjct 944 TTACACA-AAATTCCCTTTTGTACAACCTAG-----ATGT-TGGCCGTGGTGTCC-ATGT 995
Query 1057 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1088
||||||||||||||||||||||||||||||||
Sbjct 996 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1027
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 87.9 bits (47), Expect = 1e-16
Identities = 115/145 (79%), Gaps = 16/145 (11%)
Strand=Plus/Plus
Query 978 CATTATTGGAGAGGACAATG-GATACTACACAGAAATCCCTTTAGTAGAATCTAGTTACC 1036
|||||||||||||||||||| | || |||||||||||||| | || ||||| |||
Sbjct 691 CATTATTGGAGAGGACAATGCG-TATTACACAGAAATCCC--T-GTGGAATC----TACA 742
Query 1037 AAGTG-TGGGGATA-TCCAAT-TATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGG 1093
|| || | | || ||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 743 AATTGTTCATG-TAGTCC-ATATATTTTCAATTATGTTCCAAGTTTGGTTCAAATCCAGC 800
Query 1094 AAGGTGGATG-CATTATAAAAGAAT 1117
|| || || | || ||| ||||||
Sbjct 801 AATGTAGA-GACAAAATAGAAGAAT 824
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 78.7 bits (42), Expect = 9e-14
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 505 GTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT 558
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 451 GTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGAT 504
> Ahg930570 jgi|Araly1|930570|scaffold_303027.1
Length=449
Score = 76.8 bits (41), Expect = 3e-13
Identities = 87/109 (80%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 3 GATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGG-TTCCAGCCA 61
||| || || |||||| | | |||||||||||||||||||||||||||| || | |
Sbjct 27 GATCATCTCTGATCTTCCGTGGGATTTGGTAGAGGAAATACTCTCTAGGACTTTGATA-A 85
Query 62 CATCTCTCAAA-CGATTACGATCTACTTGCAAACTATGGAACGCTTTAT 109
| ||||||| | || || |||| |||||||||| ||||||| ||||||
Sbjct 86 CTTCTCTCAGAGCGGTTG-GATCCACTTGCAAACGATGGAACACTTTAT 133
> Ahg930838 jgi|Araly1|930838|scaffold_303295.1
Length=1166
Score = 63.9 bits (34), Expect = 2e-09
Identities = 48/55 (87%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1051 CCAATTATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGGAAGGTGGATGCA 1105
||||| || ||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 1105 CCAATCATCTTCAATTATGTTCCAAGTTTGGTTCAAATATAGCAAGGTAGAGGCA 1159
> Ahg929832 jgi|Araly1|929832|scaffold_302289.1
Length=1182
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1063 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1092
||||||||||||||||||||||||||||||
Sbjct 1097 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1126
> Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511
Length=708
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1061 TCAATTATGTTCCAAGTTTGGTTCAAATC 1089
|||||||||||||||||||||||||||||
Sbjct 674 TCAATTATGTTCCAAGTTTGGTTCAAATC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5