BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22730.1 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 649 0.0 Ahg930217 jgi|Araly1|930217|scaffold_302674.1 446 2e-124 Ahg930261 jgi|Araly1|930261|scaffold_302718.1 355 4e-97 Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 193 3e-48 Ahg930837 jgi|Araly1|930837|scaffold_303294.1 180 2e-44 Ahg930817 jgi|Araly1|930817|scaffold_303274.1 110 3e-23 Ahg930816 jgi|Araly1|930816|scaffold_303273.1 87.9 1e-16 Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 78.7 9e-14 Ahg930570 jgi|Araly1|930570|scaffold_303027.1 76.8 3e-13 Ahg930838 jgi|Araly1|930838|scaffold_303295.1 63.9 2e-09 Ahg929832 jgi|Araly1|929832|scaffold_302289.1 56.5 4e-07 Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 54.7 1e-06 > Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 Length=1152 Score = 649 bits (351), Expect = 0.0 Identities = 611/732 (83%), Gaps = 35/732 (5%) Strand=Plus/Plus Query 4 ATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACA 63 |||||||| ||||| | ||||||||||||||||||||||||||||||||| || ||| Sbjct 1 ATGATGTCTTATCTTCCACCGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCGGCGACA 60 Query 64 TCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCCGGGA 123 ||| | | ||||||||||||||||||||||||||||||| ||||||||||| |||| | Sbjct 61 TCTTTGATACGATTACGATCTACTTGCAAACTATGGAACACTTTATTTAAACACCCAAAA 120 Query 124 TTTACC-AAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTGAAGGA 182 || || || |||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 121 TTCGCCGAA-AAGCAATTTCGTAAAGCACCAAAGGAGTCTTTTGTTCTCATGTTGAAGGA 179 Query 183 GTATAGCGTTTGTCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTC-TATAGAGTTTA 241 |||||| ||||||||||||| || |||||||| ||||||| |||| | ||||||||||| Sbjct 180 GTATAGGGTTTGTCCAATGAACGTCAATCTCAACGTTTCTCCTCCA-CATATAGAGTTTA 238 Query 242 AAGGTGCACTTAACCTAAAG-AATTATCCTCCTTATTCAGAAGAAGTCGATATACATGAA 300 | ||||||||| ||||| | ||||||||| || |||||||||| ||| ||||||||||| Sbjct 239 AGGGTGCACTTGCCCTAA-GTAATTATCCTTCTAATTCAGAAGAGGTCTATATACATGAA 297 Query 301 GCTTGTCACTGTGATGGTTTATTGCTATGTACAACTATGGACTATAGAATAGTGGTTTGG 360 | || |||||| || |||||||||||||| | ||| |||||||| ||| | ||||||||| Sbjct 298 GTTTTTCACTGCGACGGTTTATTGCTATGCAGAACCATGGACTACAGACTCGTGGTTTGG 357 Query 361 AACCCGTGTTTGGGGGAAACAAGGTGGATCCGATGGCCCAAAAACATTTACTCTAGGTTT 420 |||||||||||||| |||||||||||||||| | || ||||| | | |||||||| || Sbjct 358 AACCCGTGTTTGGGAGAAACAAGGTGGATCCAAA--CCGAAAAAAAGT-ACTCTAGGCTT 414 Query 421 GCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTGAGGTGTTGGGAT 480 ||||||||||||||||||||||||| | || ||||||||||||||||| |||| |||| Sbjct 415 GCTCTAGGATACGAGAAAAACAAATCTTACCATATCTACAAAATCTTGAAGTGTAGGGA- 473 Query 481 CGTCACAATTCACCA-ACTGGCCGAGTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGA 539 | | | | |||| || || | |||||||||||||||||| ||||| ||||||||||| Sbjct 474 CA--ATA-T--ACCATAC-GGTCAAGTTGATGAGTTTGAAATATATGATTTTAGCTCTGA 527 Query 540 TTCATGGAGGGTTCTTGATCTCGTCGCTCTTG-ATTGCCACATAGC-ATCACA-TATTGG 596 ||||||||| ||||||||| | |||||| ||| ||||| |||| | |||| | |||||| Sbjct 528 TTCATGGAGAGTTCTTGATGTTGTCGCT-TTGGATTGCTTCATA-CTATCA-AGTATTGG 584 Query 597 CGTTTCTTTCAAGGGAAATACTTATTGGCTTGCGTCTG-ATAAAA-AAGACAAATATGGA 654 ||||||||| |||||||||||||| |||| ||| | || ||||| || || | ||| | Sbjct 585 CGTTTCTTTGAAGGGAAATACTTACTGGCGTGCTT-TGGATAAAGTAA-ACTACTATC-A 641 Query 655 CT-CTT-G-CT-TTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC 710 | ||| | | || || ||||||||| |||| |||||||| ||| |||||||||| || Sbjct 642 GTTCTTAGTCAATT--TT-GATTTTACAGCAGAGAGATTTACACGTTTGTGTCTTCCGCC 698 Query 711 ATCTCAGGATGT 722 || |||| |||| Sbjct 699 ATTTCAGAATGT 710 > Ahg930217 jgi|Araly1|930217|scaffold_302674.1 Length=1162 Score = 446 bits (241), Expect = 2e-124 Identities = 820/1083 (76%), Gaps = 106/1083 (10%) Strand=Plus/Plus Query 1 ATGATGATGTCCGATCTTTCTTTG-GATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGC 59 |||||||||||||||| ||| | ||||||||||| ||||||||||||||| |||| || Sbjct 21 ATGATGATGTCCGATC-TTCCCCGCGATTTGGTAGAAGAAATACTCTCTAGGATTCCGGC 79 Query 60 CACATCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCC 119 ||||||| | ||||||||||||||||||||||||||||||||| ||||||| || |||| Sbjct 80 CACATCTGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACAACC- 138 Query 120 GGGATTT-ACCAAGAAGCAA-TTTCTTAAAGCACCAAAGGAGTC-ACTGGTTCTCATGTT 176 | | || || ||||| || |||| |||||| ||||||||||| | ||||||||||||| Sbjct 139 GAAAATTCACTGAGAAG-AACTTTCGTAAAGCTCCAAAGGAGTCTA-TGGTTCTCATGTT 196 Query 177 GAAGGAGTATAGCGTTTG-TCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTCTATAG 235 |||||||| ||| ||| | || ||||| || |||||||| |||| || |||| ||| ||| Sbjct 197 GAAGGAGTGTAGGGTTCGCTC-AATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAG 255 Query 236 AGTTTAAAGGTGCACTTAACCTAAAGAATTATCCTCCTTATTCAGAAGAAGTCGATATAC 295 ||||||||||||||||| ||| ||| ||| || | || || | ||| ||||| ||||| Sbjct 256 AGTTTAAAGGTGCACTTGGCCTGAAGGATTCTCATTCTAATACCGAACAAGTCAATATA- 314 Query 296 ATGAA-GCTTGTCACTGTGATGGTTTATTGCTATGTACAACTATG-GACTATAGAATAGT 353 | || | || ||||||||||||||| ||| |||| || || | ||| ||||| | || Sbjct 315 ACCAAAGTTTCTCACTGTGATGGTTTGTTGTTATGCACCACCG-GAGACGATAGACTTGT 373 Query 354 GGTTTGGAACCCGTGTTTGGGGGAAACAAGGTGGATCCGATGGCCCAAAA------AC-A 406 ||||||||| ||||||||||||||||| |||||||||| | | ||||| || | Sbjct 374 GGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCCAA---CACAAAACTGGTTACGA 430 Query 407 TT--TACTCTAGGTTTGCTCTAGGATACGAGAAA-AACAAATATGGCCGTATCTACAAAA 463 |||||||||||| || |||| || || ||| ||||||| | |||||| |||||||| Sbjct 431 GAGATACTCTAGGTTTTCTTTAGGGTATGA-AAACAACAAATCTTGCCGTAGCTACAAAA 489 Query 464 TCTTGAGG-TGTTGGGATCGTC---ACAATT-CAC-C-AA-CTGGCCGAG-TTGATGAGT 514 ||||| || |||||||| ||| || ||| || | || | ||||||| || | | || Sbjct 490 TCTTG-GGATGTTGGGACCGTATTTACGATTACAAACTAAAC-GGCCGAGGTTTAAG-GT 546 Query 515 TTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTTGAT- 573 ||||||||||||| ||| |||||||||||||| ||||||||| | |||||| ||| Sbjct 547 TTGAAATCTATGACATTAACTCTGATTCATGGAAAGTTCTTGATGACCTCGCTCATGACC 606 Query 574 TGCCA-CATAGCA-TCACATATTGGCGTTTCTTTCAAGGGAAATACTTATTGGCTTGCGT 631 | | | | || | | | | |||| ||| ||||| |||||||| ||||| ||| ||| || Sbjct 607 T-C-ATCCTACCGGT-A-A-ATTG-CGTGTCTTTAAAGGGAAACACTTACTGGTTTG-GT 659 Query 632 -CTGATAAAAA-AGACAAATATGGACTCTTGCTTTGCTTCGATTTTACAACAGAAAG-AT 688 || | ||| | || || | ||| | | ||| | ||||||||||| || || || Sbjct 660 TCTTTTGTAAACA-ACTTAT-T--ACT-TAG-TTT--T--GATTTTACAACTGAGAGGAT 709 Query 689 TTACGCGTCTGTGTCTTCCACCATCTCAGGATG-TG-TCTAAGATGGCTCTATCAGTTGT 746 | | | | | |||||||| |||| || |||| || | | | |||||||||||||||| Sbjct 710 TAAA-CATTTTTGTCTTCCGCCATTTCGGGATCATGGTTTTA--TGGCTCTATCAGTTGT 766 Query 747 TGGAGGAA-AACAACTCTCACTGTTA-AGTCAAAGTGATAGTACATCAAAGATAATGGAG 804 ||||| || ||| ||| ||| ||||| | | | ||| || | |||||||| |||| Sbjct 767 TGGAG-AAGAACGACTATCAGTGTTACAACCGAT-TGAGAG-A--TCAAAGAT---GGAG 818 Query 805 ATGTGGGTGACCAATA---TT-AT--TGAAGATG-TACTGATGTGGAGCAAATCTTTTAC 857 || | || ||||||| || || ||||| | | || ||||||||||||| ||||| Sbjct 819 ATATTTGTTACCAATAAAGTTGATAGTGAAGCGGCTT-TGTTGTGGAGCAAATCCTTTAC 877 Query 858 CGTGGATATACCCATTCGCGG-TGATTATTGTCC-GTA--TTT--GACGAGT-TATCTAG 910 |||||| |||||||| | || | | | || ||| | | ||| | ||||| | | || Sbjct 878 AGTGGATTTACCCATT-G-GGCTTAGT-TT-TCCTG-AGGTTTTCG-CGAGTCTTT-TAA 930 Query 911 TCGACGAAGAAAAGAAAGTGGC-TGTGTGTTATAATGAAAATTTTGA-GAAAAGCAACAA 968 | ||||| || |||||||| || | |||||| |||| | | | || || ||| || Sbjct 931 TTGACGAGGAGAAGAAAGTTGCCT-TGTGTTGTAATTTAGCTCT-GAAGACCGGCAGGAA 988 Query 969 GAAAGTATACATTATTGGAGAGGACAATGGATACTACACAGAAATCCCTT-TAGTAGAAT 1027 ||||||| |||||||||||||| || ||| ||| |||||||||||| | ||||||| Sbjct 989 CTTGGTATACACTATTGGAGAGGACAGTGAATATTACTCAGAAATCCCTTAT-GTAGAAT 1047 Query 1028 CTA 1030 ||| Sbjct 1048 CTA 1050 > Ahg930261 jgi|Araly1|930261|scaffold_302718.1 Length=1043 Score = 355 bits (192), Expect = 4e-97 Identities = 669/884 (76%), Gaps = 94/884 (11%) Strand=Plus/Plus Query 3 GATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCAC 62 |||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||| Sbjct 20 GATGATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCAC 79 Query 63 ATCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAA-ACCCGG 121 |||| |||||||||||||||| ||||| | || |||| |||||||| |||||| ||| Sbjct 80 ATCTTTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTA-TTAAAAGACCAAA 138 Query 122 GATTTACCAAGAAGCAATTTCTTAAAGCACCAAAGGAGTC-ACTGGTTCTCATGTTGAAG 180 ||| || ||||||| | || |||||||||||||||||| | |||||||||||||||| Sbjct 139 AATTCACTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCTA-TGGTTCTCATGTTGAAA 197 Query 181 GAGTATAGCGTTTGTCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTCTATAGAGTTT 240 |||||||| ||||||||||| | || |||||||| |||| || |||| |||||||||||| Sbjct 198 GAGTATAGGGTTTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTT 257 Query 241 AAAGGTGCACTTAACCTAAAGAATTATCC-TCCTTA-TTCAGAAGAAGTCGATAT-ACAT 297 |||||||||||| | ||| || | | || ||||||| ||||||| || || Sbjct 258 AAAGGTGCACTT--GGT----TATT-CCCATTC-TAGTTCAGAACAAGTCGAGATAAC-C 308 Query 298 GAAGCTT-GTCACTGTGATGGTTTATTGCTATGTA-CAACTATGGACTATAGAATAGTGG 355 |||| || |||||| |||||||| ||| |||| | || | || ||| ||||| | ||| Sbjct 309 GAAG-TTATTCACTGCGATGGTTTGTTGTTATGCACCACCAAT-GACAATAGACTCTTGG 366 Query 356 TTTGGAACCCGTGTTTGGGGGAAA-CAAGGTGGATCCGATGGCCCAAA----A--AC--- 405 ||||||| |||||||||||||||| ||| ||| |||| | | |||| | || Sbjct 367 TTTGGAATCCGTGTTTGGGGGAAACCAA-GTGTATCC-A--ACTCAAAGTTGATTACGGG 422 Query 406 ---ATTTACTCTAGGTTTGCTCTAGG--ATA-CGAGAAA-AACAAATATGGCCGTATCTA 458 | ||||| || ||||||||||| ||| | | ||| ||| ||| | |||||| ||| Sbjct 423 AGAAACTACTCCAGCTTTGCTCTAGGATATATCCA-AAACAACGAATCTTGCCGTAGCTA 481 Query 459 CAAAATCTTGAGGTGTTGGGA-TCGTCACA-ATT-C--ACCA--ACTGGCCG--AGTTG- 508 |||||||||| || ||| ||| | || | | ||| | | || || | ||| || | Sbjct 482 CAAAATCTTGTGGAGTT-GGAGTAGT-AAAGATTACGAATCATCACCGCCCGAAAGAGGT 539 Query 509 AT-GAGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT--C-TCG-T 563 | | ||||||||| || ||||||||||||||||||||||||||||||||| | | | Sbjct 540 TTGGGGTTTGAAATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACATTAAT 599 Query 564 C--G-CTC-TTGATT--GC-CA-CATA-GCATCAC-ATATTGGCGTTTCTTTCAAGGGAA 613 | | ||| ||| | || || | | | || | | | |||||| ||||| ||||||| Sbjct 600 CACGACTCCTTGGTCAAGCACAAC-TCCGTATTAGGA-AGTGGCGTGTCTTTGAAGGGAA 657 Query 614 ATACTTA-TTGGCTT-GCGTCTGATAAAAAAGACAAATA-TGGACTCTTGCTT-TGCTTC 669 ||||||| ||| || |||| |||| |||| |||| | || | || ||| || || Sbjct 658 ATACTTACTTG--TTCGCGTATGATGTTGAAGA-AAATTCTAGATTTTTACTTATGTTT- 713 Query 670 GATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACCATCTC-AGGATGT-G-TCT 726 |||||||||||||| ||||| | ||||| || ||||| | || || | ||||| | || Sbjct 714 GATTTTACAACAGAGAGATTGAAACGTCTATGCCTTCCGC-ATTTCCAAGATGTTGGTC- 771 Query 727 AAGATGGCTCTATCAGTTGTTGGAGGAA-AACAACTCTCACTGTTA-AGTCAAAGT-GAT 783 | |||| ||||||||||||| ||| || |||| |||||| | ||| | | | | | | Sbjct 772 AC-ATGGTTCTATCAGTTGTTAGAG-AAGAACACCTCTCAATATTACATTGGAC-TCG-T 827 Query 784 AGTACATCAAAGATAATGGAGATGTGGGTGACCAATATTATTGA 827 | |||||||||||| |||||| ||| | ||||||| ||||| Sbjct 828 ACTACATCAAAGAT---GGAGATATGGATAACCAATAACATTGA 868 > Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 Length=1092 Score = 193 bits (104), Expect = 3e-48 Identities = 235/296 (79%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 1 ATGATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCC 60 |||||||||||||||||| || ||| || |||| |||||||||||||||||||||||| Sbjct 1 ATGATGATGTCCGATCTTCCTCCGGAACTGTTAGAAGAAATACTCTCTAGGGTTCCAGCC 60 Query 61 ACATCTCT-CAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCC 119 |||| | | ||| ||| |||||||||||||||||| |||||||| ||| || ||| || Sbjct 61 ACATGTTTGCAA-CGAGTACGATCTACTTGCAAACGATGGAACGATTTGTTCAAAGAC-- 117 Query 120 GG--GATTTACCAAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTG 177 || |||| || ||||||| |||| |||||| ||||||||| || | ||||||||| Sbjct 118 GGAAGATTCACGGAGAAGCACTTTCGTAAAGCTGAAAAGGAGTCTTTGATACTCATGTTG 177 Query 178 AAGGAG-T-ATAGCGTTTG-TCCAAT-GATCGCCAATCTCAGCGTTTCTGCTCCGTCTAT 233 |||||| | | | | |||| || ||| | || |||||||| | |||| |||| ||| | Sbjct 178 AAGGAGCTTAAA-C-TTTGCTC-AATCGG-CGTCAATCTCAACTTTTCACCTCCATCTGT 233 Query 234 AGAGTTTAAAGGTGCACTTAACCTAAA-GAATTATCCTCCTTA-TTCAGAAGAAGT 287 ||||||| ||||| ||||| ||||||| || || || || || ||||||| |||| Sbjct 234 AGAGTTTCAAGGTACACTTGACCTAAAAGA-TTC-CCACCCTAATTCAGAACAAGT 287 Score = 145 bits (78), Expect = 8e-34 Identities = 184/232 (79%), Gaps = 20/232 (9%) Strand=Plus/Plus Query 409 TACTCTAGGTTTGCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTG 468 ||||||||||||||||||||||||||||| ||||||| | || ||| ||||||| ||||| Sbjct 349 TACTCTAGGTTTGCTCTAGGATACGAGAACAACAAATCTTGCAGTAGCTACAAATTCTTG 408 Query 469 AGGTGTTGGGATCGTCACAATT-CACCAACT-GGC--CGA-GTTG-A-T---GAG-TTTG 517 | |||||||| | || || || || |||| ||| ||| | | | | | | |||| Sbjct 409 ATGTGTTGGGTTTGTTACGATGGCA--AACTAGGCGACGAAGACGGAGTTTTGGGGTTTG 466 Query 518 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCT-CTTGATTGC 576 ||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||| Sbjct 467 AAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATGACGTCGCTTCC-GACTGC 525 Query 577 CACATAGCATCA-CATATTGGCGTTTCTTTCAAGGGAAATACTTATTGGCTT 627 | |||| || || ||||| ||||| ||||||||| |||| |||||| Sbjct 526 TT--TC-CATCTGCAAAT-GGCGTGTCTTTGAAGGGAAATGCTTACTGGCTT 573 Score = 62.1 bits (33), Expect = 9e-09 Identities = 36/37 (97%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1054 ATT-ATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1089 ||| ||||||||||||||||||||||||||||||||| Sbjct 1017 ATTCATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 1053 > Ahg930837 jgi|Araly1|930837|scaffold_303294.1 Length=702 Score = 180 bits (97), Expect = 2e-44 Identities = 405/548 (74%), Gaps = 44/548 (8%) Strand=Plus/Plus Query 239 TTAAA-GGTGCACTTAACCT-AAAGAATTATCC-TCCTTATTC-AGAAGAAGTCGATATA 294 ||||| ||| |||||| | | |||| ||| ||| | | |||| | || ||||| | ||| Sbjct 149 TTAAAGGGTTCACTTAGCTTAAAAG-ATT-TCCATTATAATTCTA-AACAAGTCAAGATA 205 Query 295 -CATGAAGCTTGTCACTGTGATGGTTTATTGCTATGTA-CAACTATGGACT-ATAGAATA 351 | | || || |||||| |||||||||||| |||| | | || | ||| | ||||| | Sbjct 206 GCCCG-AGTTTTTCACTGCGATGGTTTATTGTTATGCATC-ACCAAGGA-TGATAGACTC 262 Query 352 GTGGTTTGGAACCCGTGTTTGGGGGAAACA-AGGTGGATCCGA-T--GGCCCAAAAAC-A 406 ||||||||||||||||||||||| |||| | |||||||||| | | | | | || | Sbjct 263 GTGGTTTGGAACCCGTGTTTGGGAGAAA-ATAGGTGGATCCCACTCAGAACTGATTACAA 321 Query 407 TTTACT--CTAGGTTTGCTCTAGGATACGAGAAA-AACAAATATGGCCGTATCTACAAAA 463 | | ||| |||||||||||||||| | ||| ||||||| | | | || |||||||| Sbjct 322 GGGAATAACTATGTTTGCTCTAGGATACCA-AAATAACAAATCTTGTCATAGCTACAAAA 380 Query 464 TCTTGAGGTGTTGGGATCGTCACAATTCACCAACTGGCCGA-GTTGATGAGTTTGAAATC 522 |||||||||| ||| || || || |||||| || | |||| || ||| |||||| Sbjct 381 TCTTGAGGTGGTGGAATTGT---TATGAACCAACCCACC-ATGTTGTTGGGTTAGAAATC 436 Query 523 TATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTTGATTGCCACATA 582 |||||||||||||||||||||||||| ||| ||||| |||| ||| |||| | | || Sbjct 437 TATGAGTTTAGCTCTGATTCATGGAGAGTTTTTGATAAAGTCGATCTCGATTTCTATTTA 496 Query 583 GCATCACATATTGGCGT-T-TCTTTCAAGGGAAATACTTATTGGCTTGCGTCT-GATAAA 639 || ||| ||| || | ||||| |||||||||||||| |||||| | | | ||| Sbjct 497 -CAA-ACAAATTCTTGTGTGTCTTTGAAGGGAAATACTTACTGGCTTACTT-TAGATCTT 553 Query 640 AAAGACAAATATGGACTCTTGCTTTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTG 699 | || ||| | |||| | | || |||||||||| || ||||||| ||| || Sbjct 554 AGTGA-AAAG-T----TCTTCCACAGTTTTGATTTTACAAGGGAGAGATTTAAACGTTTG 607 Query 700 TGTCTTCCACCATCTCAGGA-T-GTGTCTAAGATGGCTCTATCAGTTGTTGGAGGAAAAC 757 |||||||||||| || | | | |||| || | || ||||||||||||| ||| ||||| Sbjct 608 TGTCTTCCACCAAATCCGAAATCGTGT-TAT-ACGGTTCTATCAGTTGTTAGAGAAAAAC 665 Query 758 AACTCTCA 765 | |||||| Sbjct 666 AGCTCTCA 673 > Ahg930817 jgi|Araly1|930817|scaffold_303274.1 Length=1060 Score = 110 bits (59), Expect = 3e-23 Identities = 332/452 (73%), Gaps = 66/452 (15%) Strand=Plus/Plus Query 670 GATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC-ATCTCAGGATGTGTCTAA 728 |||||||||||||| ||||||| ||| ||| |||||| || || | || || || | Sbjct 609 GATTTTACAACAGAGAGATTTAAACGTGTGTATCTTCCGCCAAT-TGAGAATTTGGATTG 667 Query 729 GATGGCTCTATCAGTTGTTGGAGGAA-AACAACTCTCACTGTTAAGT-C--AAAGTGATA 784 || | ||||||| ||||| || ||| || |||||||| |||||| | | |||| | || Sbjct 668 GAAGATTCTATCAATTGTTAGA-GAAGAAGAACTCTCAGTGTTAA-TACAGAAAGAG-TA 724 Query 785 GTACATCAAAGATAATGGAGATGTGGGTGACCAATATTATTG-AA--GATG-TA-C-TGA 838 |||||||||| |||||||| |||||| |||||| ||||| || || | | | || Sbjct 725 -TACATCAAAG---ATGGAGATTTGGGTGGCCAATAATATTGAAACTGAAGCCACCTTG- 779 Query 839 T-GTGG-AGCAAATCTTTTACCGTGGATATACCCATTCGCGGTGA---T--T-ATTGT-C 889 | ||| || ||||| ||||| |||||||||| |||||| | | | | ||| | | Sbjct 780 TCATGGAAG-AAATCCTTTACTGTGGATATACGAATTCGCACTAATTCTCATAATTATAC 838 Query 890 CGTATTTGAC-GAG-TTATCTAG-TCGACGAAGAAAAGAAAGTGGCT-GTGTGTTATAAT 945 | |||| | || || ||| | |||| || || |||||||||| | ||||||| |||| Sbjct 839 AG--TTTGCCATAGCTT-TCT-GATCGAGGAGGAGAAGAAAGTGG-TCGTGTGTTGTAAT 893 Query 946 GAAAATTTTGAGAA--AAG-CAACAAGAAAGTATACATTATTGGAGAGGACAATGGA-TA 1001 | ||| | ||| | | || || | | || ||||||||||||||||| || || || Sbjct 894 G-AAA----G-GAATTATGACATCATG--A-TAGACATTATTGGAGAGGACGAT-GACTA 943 Query 1002 CTACACAGAAA-TCCCTTTAGTAGAATCTAGTTACCAAGTGTGG--G-GATATCCAAT-T 1056 |||||| ||| ||||||| ||| || |||| | || ||| | | | ||| || | Sbjct 944 TTACACA-AAATTCCCTTTTGTACAACCTAG-----ATGT-TGGCCGTGGTGTCC-ATGT 995 Query 1057 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1088 |||||||||||||||||||||||||||||||| Sbjct 996 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1027 > Ahg930816 jgi|Araly1|930816|scaffold_303273.1 Length=847 Score = 87.9 bits (47), Expect = 1e-16 Identities = 115/145 (79%), Gaps = 16/145 (11%) Strand=Plus/Plus Query 978 CATTATTGGAGAGGACAATG-GATACTACACAGAAATCCCTTTAGTAGAATCTAGTTACC 1036 |||||||||||||||||||| | || |||||||||||||| | || ||||| ||| Sbjct 691 CATTATTGGAGAGGACAATGCG-TATTACACAGAAATCCC--T-GTGGAATC----TACA 742 Query 1037 AAGTG-TGGGGATA-TCCAAT-TATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGG 1093 || || | | || ||| || |||||||||||||||||||||||||||||||||| || Sbjct 743 AATTGTTCATG-TAGTCC-ATATATTTTCAATTATGTTCCAAGTTTGGTTCAAATCCAGC 800 Query 1094 AAGGTGGATG-CATTATAAAAGAAT 1117 || || || | || ||| |||||| Sbjct 801 AATGTAGA-GACAAAATAGAAGAAT 824 > Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 Length=1112 Score = 78.7 bits (42), Expect = 9e-14 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 505 GTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT 558 |||| ||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 451 GTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGAT 504 > Ahg930570 jgi|Araly1|930570|scaffold_303027.1 Length=449 Score = 76.8 bits (41), Expect = 3e-13 Identities = 87/109 (80%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 3 GATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGG-TTCCAGCCA 61 ||| || || |||||| | | |||||||||||||||||||||||||||| || | | Sbjct 27 GATCATCTCTGATCTTCCGTGGGATTTGGTAGAGGAAATACTCTCTAGGACTTTGATA-A 85 Query 62 CATCTCTCAAA-CGATTACGATCTACTTGCAAACTATGGAACGCTTTAT 109 | ||||||| | || || |||| |||||||||| ||||||| |||||| Sbjct 86 CTTCTCTCAGAGCGGTTG-GATCCACTTGCAAACGATGGAACACTTTAT 133 > Ahg930838 jgi|Araly1|930838|scaffold_303295.1 Length=1166 Score = 63.9 bits (34), Expect = 2e-09 Identities = 48/55 (87%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1051 CCAATTATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGGAAGGTGGATGCA 1105 ||||| || ||||||||||||||||||||||||||||| || ||||| || ||| Sbjct 1105 CCAATCATCTTCAATTATGTTCCAAGTTTGGTTCAAATATAGCAAGGTAGAGGCA 1159 > Ahg929832 jgi|Araly1|929832|scaffold_302289.1 Length=1182 Score = 56.5 bits (30), Expect = 4e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1063 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1092 |||||||||||||||||||||||||||||| Sbjct 1097 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1126 > Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 Length=708 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1061 TCAATTATGTTCCAAGTTTGGTTCAAATC 1089 ||||||||||||||||||||||||||||| Sbjct 674 TCAATTATGTTCCAAGTTTGGTTCAAATC 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5