BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22740.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479786 jgi|Araly1|479786|fgenesh2_kg.3__2487__AT3G22740.1 1766 0.0
> Ahg479786 jgi|Araly1|479786|fgenesh2_kg.3__2487__AT3G22740.1
Length=1147
Score = 1766 bits (956), Expect = 0.0
Identities = 1084/1147 (95%), Gaps = 3/1147 (0%)
Strand=Plus/Plus
Query 1 AACCATATGAATCTCACGATCAAAGATAATATCTC--A-TCATCTATATAGTATTTGTCT 57
||||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||||
Sbjct 1 AACCATATGAATCTCACGATCAAAGATAACATCTCATATTCTTCTATATAGTACTTGTCT 60
Query 58 CGATATTAGAGACGTACACACTTTGTTTATACTCAAATCAATATGGGATCTTTCGTGAAA 117
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CGGTAATAGAGACGTACACACTTTGTTTATAGTCAAATCAATATGGGATCTTTCGTGAAA 120
Query 118 GAAGAAACGTCGTCGTTGATGACAGATTTTTTGGAGAAGTGCGGTGGTTATGCGGTGGTG 177
|| |||||||||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct 121 GAGGAAACGTCGTCGTTGATGACGGATTTTTTGGAGAACTGTGGCGGTTATGCGGTGGTG 180
Query 178 GATGGAGGGTTTGCGACGGAGCTACAGCGCCACGGAGCTGATATCAATGATCCACTTTGG 237
|| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 181 GACGGAGGGTTTGCGACGGAGCTACAACGCCACGGGGCTGACATCAATGATCCACTTTGG 240
Query 238 AGTGCTAAGTGCCTTATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTGCTAAGTGCCTCATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 300
Query 298 GAATCTGGAGCAAATATCATCATAACAGCATCTTACCAGGCGACGATACAAGGTTTTGTG 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 301 GAATCTGGAGCAAATATCATCATTACAGCATCTTACCAGGCGACGATACAAGGATTCGTA 360
Query 358 GCAAAAGGTCTATCGGTGGGAGAAGCAGAAAATTTACTTAGAAGGAGCGTTGAAATCACG 417
||||||||| |||| ||||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 361 GCAAAAGGTTTATCTGTGGGAGAAGCGGAAAGTTTACTTAGGAGGAGCGTTGAAATCACG 420
Query 418 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 480
Query 478 GCTGGAAAAGCTTCCCGGAGACCAATTCTTGTCGCAGCTTCCGTTGGTAGCTATGGAGCT 537
|| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||
Sbjct 481 GCCGGAAAAGCTTCCCGGCGACCTATTCTTGTTGCAGCTTCCGTTGGTAGCTATGGAGCT 540
Query 538 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 600
Query 598 TTAAAGGATTTCCATAGAAGAAGAGTTCAAATCTTAGCAAAATCTGGAGCCGACCTAATA 657
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| | ||
Sbjct 601 TTAAAGGACTTCCATAGAAGAAGAGTTCAAATCTTAGCGAACTCTGGAGCCGATTTCATC 660
Query 658 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCTTATGCGGATCTTCTTGAGGAG 717
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 661 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCGTATGCGAATCTTCTTGAGGAG 720
Query 718 GAAGATATCGATATTCCGGCATGGTTCTCGTTCACTTCCAAGGACGGAGTCAGTGTGCCA 777
||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 721 GAAGACATCAATATTCCGGCATGGTTTTCGTTCACTTCAAAGGACGGAGTCACTGTGCCA 780
Query 778 CGAGGAGATTCAGTTGTAGAATGTGCGAAAGTGGCAGATTCATGCAAGAACGTGGTGGCC 837
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 781 CGAGGAGATTCGGTTGTAGAATGTGCGAAAGTGGCAGATTCTTGCAAGAAAGTGGTGGCC 840
Query 838 ATTGGAATCAATTGTACTGCACCAAGATACATTCATGCTTTAATTATCTCCTTGCGCCAG 897
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 841 ATTGGAATCAATTGTACTGCACCAAGATACATACATGATTTGATTATCTCCTTGCGCCAG 900
Query 898 ATGACACGCAAACCAATCGTTGTATACCCAAACAGCGGGGAAGTCTACGACGGTCTGAAC 957
|||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 901 GTGACCCGCAAACCGATCGTTGTGTACCCAAATAGCGGGGAAGTCTACGACGGTCTGAAC 960
Query 958 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1020
Query 1018 TGGAGAGATGCAGGAGCTTCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGAGAGATGCAGGAGCATCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1080
Query 1078 AGAGCCATTGCTAAAGTTCTCTCCGACGAACCTTCTGCAGCATCAAAACCCAAATTCGGG 1137
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||
Sbjct 1081 AGAGCCATTGCTAAAGTTCTCTCCGACGAATCTCCCGCAGCATCAAAACCCAAATTCCGG 1140
Query 1138 CAATAGA 1144
|| ||||
Sbjct 1141 CAGTAGA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5