BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22760.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930271 jgi|Araly1|930271|scaffold_302728.1 2499 0.0
Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1 540 2e-152
Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1 409 5e-113
Ahg930270 jgi|Araly1|930270|scaffold_302727.1 348 1e-94
> Ahg930271 jgi|Araly1|930271|scaffold_302728.1
Length=1915
Score = 2499 bits (1353), Expect = 0.0
Identities = 1738/1915 (91%), Gaps = 61/1915 (3%)
Strand=Plus/Plus
Query 146 GATTGTTTTTGGTAGTTAGAAAATGGATACACCGGAAAAGAGTGAAACCCAGATCGGTAC 205
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||
Sbjct 2 GATTGTTTTTGGT-GTTAGAAAATGGATACACCGCAAAAGAGTGTAACCCAGATCGGGAC 60
Query 206 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAGTTACATATGCAATCTCTC 265
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAATTACATATGCAGTCTCTC 120
Query 266 ACCAATTAAGACTATCAAACCAATTCCAATCACTTGTCCTTTAAGCTCTCTCAATTACGC 325
||||||||||||| ||||| |||||||||||||| | |||||||||||||||| | |
Sbjct 121 ACCAATTAAGACTCTCAAATCAATTCCAATCACTCAAACGTTAAGCTCTCTCAATTTCAC 180
Query 326 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAG 385
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAATCTCGTTTCAG 240
Query 386 AAGTCAAAAAGATGTGTCTGCTTCTAAAGAA---G------TT---G--G-A-G--AAGA 427
|||||||||||||| |||||||||||||||| | || | | | | ||||
Sbjct 241 AAGTCAAAAAGATGGGTCTGCTTCTAAAGAAGTTGCTTCCATTGGAGAAGAAGGAAAAGA 300
Query 428 AGAAGCTTTAGTCG---GTAGCGAACCGGAACAAAGCT-ACAAGAATGACTGCAATACTC 483
|||||||||||| | ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 301 AGAAGCTTTAGTTGAAAATAGCGAACCGGCGCAAAG-TCACAAGAATGACTGCAATACTC 359
Query 484 CTAGAGTTACCAATGATGTGAAAGACAA----TG--GT-----T-GTGGGAAGGATTTGC 531
||||||||| | ||||||||| || ||| || || | |||||||||||||||
Sbjct 360 CTAGAGTTAGCGATGATGTGAGAGGCAATGGTTGTTGTGAAGATAGTGGGAAGGATTTGC 419
Query 532 AGGTGATGATGGACAATGTCAAGAAGAAAAGTGATACTCCGGATTGGGAAACTTTGATTG 591
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 AGAAGATGATGGACAATGTCAAGAAGAAAAGTGATACTCCAGATTGGGAAACTTTGATTT 479
Query 592 CTGCTACAACAGAACTGATTTATGGCTCACCGAGAGAGTCAGAGGCTTTTAGTTGCTTGT 651
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 480 CTGCTACAACAGAACTAATTTACGGCTCACCGAGGGAGTCAGAGGCTTTTAGTTGCTTGT 539
Query 652 TGAAGAAAACTTCAAACTCTGAAGCACGTCTACGTGGTAGTATAACTG-CAACATCGGTG 710
|||||| |||||||||||||||||||||| |||||||| ||| || || ||||||| |
Sbjct 540 TGAAGAGAACTTCAAACTCTGAAGCACGTGTACGTGGTGGTACAA-TGCCAACATCAAAG 598
Query 711 GCTGTTACGAATACCGATGTAGTCAACAATGAATCTGAATCTGTTGATGCTCTTTCGATA 770
||||| ||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||
Sbjct 599 CCTGTTTCGAATACCGATGTAGGCAATAATGAATCTGAGTCTCTTGATGCTCTTTCGATC 658
Query 771 TTGCACCGTGGTGTGAGAAGACGGTGTTTAGACTTTGAGGTTAAGGGGAATAATCAGCAA 830
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 659 TTGCACCGAGGTGTGAGAAGACGGTGTTTAGACTTTGAGATTCCCGGGAATAATCAGCAA 718
Query 831 ACATTAGGAGAATCTTCATCTAGTTGTGTAGTACCTAGCATTGGTCTGCATCTTAACACC 890
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 719 ACATTGGGAGAATCTTCATCGAGTTGTGTGGTACCTAGCATTGGTCTGCATCTTAATGCC 778
Query 891 ATTGCAATGTCCTCTAAGGACAAGAATGTTGCTAATGAGTATTCATTTTCCGGT-AACAT 949
|||||||| |||||||||| || ||||||||||||||||| ||||||||| || |||||
Sbjct 779 GTTGCAATGCCCTCTAAGGATAACAATGTTGCTAATGAGTACTCATTTTCC-GTAAACAT 837
Query 950 AAAAGTCGGTGTGCAAAGTTCT-CTGACTCCGGTGCTTCATTCGCAGCACGACA-TCGTG 1007
||||||||| ||||||||||| | |||||| | ||||| |||| |||||| | || ||
Sbjct 838 GAAAGTCGGTTTGCAAAGTTCTAC-CACTCCGCTTCTTCAGTCGCCGCACGAGATTC-TG 895
Query 1008 AGAGAAAATGAAAGCGGGAAAGATTC-AGGACAAATTATAGAAGTGGTTCCAAAGTCTTT 1066
| ||||||||||| |||||||||| | | | ||| |||||||||||||||||||||||||
Sbjct 896 ATAGAAAATGAAACCGGGAAAGATGCTA-GTCAAGTTATAGAAGTGGTTCCAAAGTCTTT 954
Query 1067 AGCTTCAGTAGACTTGACTCCAATAAGCCCCAAGAAGAAAAGGCGTAAGTCCGAACAATC 1126
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGCTTTAGTTGAATTGACTCCAATAAGCCCCAAGAAGAAAAGGCGTAAGTCCGAACAATC 1014
Query 1127 AGGAGAAGGCGACTCGTCATGTAAACGGTGCAACTGCAAAAAATCCAAGTGTTTGAAGCT 1186
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1015 AGGAGAAGGCGAGTCCTCATGTAAACGGTGTAACTGCAAAAAATCCAAGTGTTTGAAGCT 1074
Query 1187 TTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTG 1246
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1075 TTACTGTGAATGCTTTGCTGCTGGAGTTTATTGCATAGAGCCATGTTCATGTATAGATTG 1134
Query 1247 CTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCG 1306
|||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1135 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCTACTCGTAAACAGATTGAATCCCG 1194
Query 1307 CAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGG 1366
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1195 CAATCCGCTTGCATTTGCTCCTAAAGTCATCAGAAACTCGGATTCCATCATTGAAGTTGG 1254
Query 1367 TGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAA 1426
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGAGGATGCAAGCAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAA 1314
Query 1427 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGTTGTTCTATAAA 1486
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1315 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGCTGTTCTATAAA 1374
Query 1487 CTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTTTGTTCGAACA 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTTTGTTCGAACA 1434
Query 1547 AGATGAGGAGAATGAAACATCTGGCACACCCGGAACAAAGAAAACACAACAGAATGTCGA 1606
||||||||| || ||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 1435 AGATGAGGAAAACGAAACATCTGGCAAAAGCGGAACAACGAAAACACAACAGAATGTCGA 1494
Query 1607 GTTGTTCAAACCTGCAGCTCCACCTTCAACACCAATTCCATTTAGACAACCACTGGCGCA 1666
||||||||| ||||| |||| ||||||||||||||| ||| | |||||||||||||| ||
Sbjct 1495 GTTGTTCAATCCTGCTGCTCAACCTTCAACACCAATGCCAATAAGACAACCACTGGCTCA 1554
Query 1667 ACTTCCAATCTCATCCAACAACAGACTGCTACCTCCACAGTCTCATTTTCATCATGGAGC 1726
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ACTTCCACTCTCATCCAACAACAGACTGCTACCTCCACAGTCTCATTTTCATCATGGAGC 1614
Query 1727 TATTGGATCATCTTCCTCAGGGATATACAACATCAGAAAACCAGACATGAGTTTGTTGTC 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TATTGGATCATCTTCCTCAGGGATATACAACATCAGAAAACCAGACATGAGTTTGTTGTC 1674
Query 1787 TCATTCAAGAATCGAGACAATCACAGAGGATATTGATGAT-AT--GTCTGAGAATCTAAT 1843
|||||||| || |||||||||||||| |||||||||||| || ||| |||||||||||
Sbjct 1675 ACATTCAAGGATTGAGACAATCACAGAAGATATTGATGATGATATGTCCGAGAATCTAAT 1734
Query 1844 CCATTCTCCAATAACTA-C-TC--TA-TCT--C-CC-AACAGCAAAAGGGTTTCGTTGTC 1894
||||||||||||| ||| | || || ||| | || ||||||||||||||||| ||| |
Sbjct 1735 CCATTCTCCAATAGCTAACATCAATAGTCTATCTCCCAACAGCAAAAGGGTTTCTTTGGC 1794
Query 1895 TCATCTTGATTCACCAGAGTCGACTCCATGGAGAAGAAATGGTGGGGGGAGGAATCTGAT 1954
||||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||
Sbjct 1795 TCATCTTGATTCATCAGAGTCGTCTCCATGGAGAAGAACTGGTGGC---AGGAATCTGAT 1851
Query 1955 ACGTTCGTTCCCAACGTTTCCTTCTCTCACTCCACACCATTAAAATTCTTTGAAT 2009
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 ACGTTCGTTTCCAACGTTTCCTTCTCTCACTCCACACCATTAAAATTCTTTGAAT 1906
> Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1
Length=2378
Score = 540 bits (292), Expect = 2e-152
Identities = 384/429 (90%), Gaps = 3/429 (1%)
Strand=Plus/Plus
Query 1109 GCGTAAGTCCGAACAATCAGGAGAAGGCGACTCGTCATGTAAACGGTGCAACTGCAAAAA 1168
|||||| || |||||| | ||||| || || ||||||||| || ||||||||||||||
Sbjct 1261 GCGTAAATCTGAACAAGCTGGAGAGGGTGA---GTCATGTAAGCGATGCAACTGCAAAAA 1317
Query 1169 ATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCC 1228
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1318 GTCAAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGCC 1377
Query 1229 ATGTTCATGTATAAATTGCTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCG 1288
||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||| ||
Sbjct 1378 ATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCCG 1437
Query 1289 CAAACAGATTGAATCCCGCAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGA 1348
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 1438 CAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAGCGCAGA 1497
Query 1349 TTCCATCATTGAAGTTGGTGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACG 1408
|||| |||| |||| |||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 1498 TTCCGTCATGGAAGCTGGTGATGATGCAAGTAAAACCCCAGCTTCTGCACGACACAAACG 1557
Query 1409 AGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGG 1468
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1558 CGGCTGCAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTGG 1617
Query 1469 AGTTGGTTGTTCTATAAACTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGA 1528
||| || ||||| || |||||||||||||||||||| |||||| ||| |||||||||||
Sbjct 1618 AGTCGGCTGTTCCATGAACTGTAGATGTGAAGGATGCCAAAATGTATTCGGCAGAAAAGA 1677
Query 1529 TGGGTCTTT 1537
||||||||
Sbjct 1678 AGGGTCTTT 1686
> Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1
Length=2103
Score = 409 bits (221), Expect = 5e-113
Identities = 308/351 (88%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 1187 TTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTG 1246
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||
Sbjct 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
Query 1247 CTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCG 1306
|||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
Query 1307 CAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCAT-CATTGAAGTTG 1365
||||||||||||||||||||||||||||| || ||||| || || | | | ||| |
Sbjct 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGAGTCGGTTC-TAGAAACCG 1270
Query 1366 GTGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGA 1425
| || |||||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||
Sbjct 1271 GGGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGA 1330
Query 1426 AATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGTTGTTCTATAA 1485
||||||||||| |||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct 1331 AATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATAA 1390
Query 1486 ACTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTT 1536
|||||||||||||||||||||| || ||||||||| | |||||||||||||
Sbjct 1391 ACTGTAGATGTGAAGGATGTAAGAACGCATTTGGCCGCAAAGATGGGTCTT 1441
> Ahg930270 jgi|Araly1|930270|scaffold_302727.1
Length=270
Score = 348 bits (188), Expect = 1e-94
Identities = 223/240 (93%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 146 GATTGTTTTTGGTAGTTAGAAAATGGATACACCGGAAAAGAGTGAAACCCAGATCGGTAC 205
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||
Sbjct 2 GATTGTTTTTGGT-GTTAGAAAATGGATACACCGCAAAAGAGTGTAACCCAGATCGGGAC 60
Query 206 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAGTTACATATGCAATCTCTC 265
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 TCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAATTACATATGCAGTCTCTC 120
Query 266 ACCAATTAAGACTATCAAACCAATTCCAATCACTTGTCCTTTAAGCTCTCTCAATTACGC 325
||||||||||||| ||||| |||||||||||||| | |||||||||||||||| | |
Sbjct 121 ACCAATTAAGACTCTCAAATCAATTCCAATCACTCAAACGTTAAGCTCTCTCAATTTCAC 180
Query 326 ATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAG 385
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 181 ATCTCCACCTTCTGTTTTCACTTCCCCTCACGCGGTTTCTCATAAAGA-TCTCGTTTCAG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5