BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G22770.1 Length=984 Score E Sequences producing significant alignments: (Bits) Value Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 1153 0.0 Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 582 1e-165 Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 333 1e-90 Ahg930557 jgi|Araly1|930557|scaffold_303014.1 291 9e-78 Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 268 4e-71 Ahg930559 jgi|Araly1|930559|scaffold_303016.1 263 2e-69 Ahg930556 jgi|Araly1|930556|scaffold_303013.1 128 7e-29 Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 121 1e-26 Ahg925743 jgi|Araly1|925743|scaffold_201304.1 115 6e-25 Ahg930371 jgi|Araly1|930371|scaffold_302828.1 106 3e-22 Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 104 1e-21 Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 78.7 8e-14 Ahg930411 jgi|Araly1|930411|scaffold_302868.1 67.6 2e-10 Ahg929032 jgi|Araly1|929032|scaffold_301489.1 65.8 6e-10 Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 65.8 6e-10 Ahg929886 jgi|Araly1|929886|scaffold_302343.1 62.1 8e-09 Ahg929147 jgi|Araly1|929147|scaffold_301604.1 58.4 1e-07 > Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 Length=1263 Score = 1153 bits (624), Expect = 0.0 Identities = 875/989 (88%), Gaps = 46/989 (5%) Strand=Plus/Plus Query 1 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTGATAACAAC 60 |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| || Sbjct 248 ATGGTGGTCATGATGAAGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAAC-AC 306 Query 61 GTCGTTGAatcatcatcatcatcatcatcatcatGTATAAAACGTGAAGCTAAAGTTATT 120 | |||| | |||||||||||||||||| ||||||||| ||||| Sbjct 307 G--GTTG----------------A--ATCATCATGTATAAAACGCGAAGCTAAACTTATT 346 Query 121 AGCTTAGGCGACGAAGTTGATGATATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTA 180 |||||||||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct 347 GGCTTAGGCGATGATGAACTTGATATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTA 406 Query 181 TGCATCAGCATCACCCAAGCCAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCAT 240 ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 407 TGCATCAGCATCACCAAAGACAAGACTAGGCTCGTGGTTTGGAACCCCTATTGGGGGCAT 466 Query 241 ACCCGGT-CAATCGAGCCCACACATCAGTTCAACAAATTCGACAGCTATTCTTATGCTCT 299 |||| || ||||||||||||||||||| ||||||||| |||| |||||||| |||||||| Sbjct 467 ACCC-GTCCAATCGAGCCCACACATCAATTCAACAAACTCGATAGCTATTCGTATGCTCT 525 Query 300 CGGATACGACAAGAGCAGCAAATCCCACAAAATCTTGAGGTGTATTACTTGTTTGAGACC 359 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 526 CGGATACGACAAGAGCAGCAAATCCCACAAAATCTTGAGGGGTATTACTTGTTTGA-AGC 584 Query 360 CCATTTTCATGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGT 419 || ||| | | ||||||||||||||||||| |||||||||||||| || |||| Sbjct 585 CC---TTC---A----A-AATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGT 633 Query 420 CACTCCAGACTGGCAATTAGGGACTATT-AATAGTGGCGTGTCTCTCAAGGGAAATGCCT 478 ||||||||||||||| ||| |||||||| | | |||||||||||||||||||||||| | Sbjct 634 CACTCCAGACTGGCACTTAAGGACTATTCACCA-TGGCGTGTCTCTCAAGGGAAATGCGT 692 Query 479 TCTGGGTTGCTGAAGAGAAGTATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTAC 538 |||| |||||||||||||||||| |||||| || | || | | || || ||||||||| Sbjct 693 ACTGGTTTGCTGAAGAGAAGTATTCCGAAACCAGAG-AA-ATA-GACGATTTTTTCTTAG 749 Query 539 TCTCTTTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTTCAGTTTG 598 ||| ||||||||||||||||||||||||||| || | |||||||||||||||| |||||| Sbjct 750 TCTGTTTTGATTTCACAAGAGAGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTG 809 Query 599 TTGAATCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTAT 658 || |||||||||||| |||||||||| | ||||||||| ||||||||||||||||||| Sbjct 810 CTGTTTCTGAAGATGCTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTAT 869 Query 659 ATCAGCCGTGGGATACATTAATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAACG 718 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 870 ATCAGCCGTGGGATACATTAAAGATGGAGATCTGGGTTACGTCTAAGATTGAGCCCAACG 929 Query 719 CGGTGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAA-AACTCATTGGCCCT 777 |||| || |||||||||||||||||||||||||||||| ||| || |||||||||||||| Sbjct 930 CGGTCTCCTGGAACAGCAAGGTGTTCTTATCAGTGAGTTTAA-AACAACTCATTGGCCCT 988 Query 778 CAGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTT 837 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 989 CAGTTTCATTTTTATTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1048 Query 838 TTTGATAAAGGCTACAGA-ATACAGCGCTACATAGCTTACATCATTGGAGTGGATGGATC 896 |||||||||| ||||| | ||| ||||| |||| |||||||||||||||||||||||||| Sbjct 1049 TTTGATAAAGACTACAAAGATA-AGCGCAACATGGCTTACATCATTGGAGTGGATGGATC 1107 Query 897 CATGAAAGAAGTGGATCTTGGAGAATCAGACAG-AAGGTGTTACCCAATTGTGTGGTCTT 955 | | ||||||||||||||||||||||||||| | ||||||||||||| | ||||| |||| Sbjct 1108 CTTTAAAGAAGTGGATCTTGGAGAATCAGAC-GTAAGGTGTTACCCACTCGTGTGCTCTT 1166 Query 956 ATGTTCCAAGTCTAGTGCAACTTAATTAG 984 ||||||||||||||||| ||||||||||| Sbjct 1167 ATGTTCCAAGTCTAGTGAAACTTAATTAG 1195 > Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 Length=1110 Score = 582 bits (315), Expect = 1e-165 Identities = 536/635 (84%), Gaps = 45/635 (7%) Strand=Plus/Plus Query 1 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTGATAACAAC 60 |||||||||||||||||||||||||||||||||||||||||||| |||| | | ||| Sbjct 184 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATC-T--T--CAA- 237 Query 61 GTCGTTGAatcatcatcatcatcatcatcatcatGTATAAAACGTGAAGCTAAAGTTATT 120 || || || | | | ||||||||||||||| ||||||||| || ||||| Sbjct 238 -------AA-CA--AT-GT--TGA--ATCATCATGTATAAAGCGTGAAGCTGAACTTATT 282 Query 121 AGCTTAGGCGACGAAGTTGATGATATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTA 180 |||||||| || |||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct 283 AGCTTAGGTGATGAAG-T--TGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTA 339 Query 181 TGCATCAGCATCACCCAAGCCAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCAT 240 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 340 TGCATCAGCATCACCAAAGACAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGACAT 399 Query 241 ACCCGGTCAATCGAGCCCACACATCAGTT-CA-ACAAATTCGACAGCTAT-TCTTATGCT 297 |||||| | ||||| | ||||||| | || || | || | ||| || ||| | | ||||| Sbjct 400 ACCCGGACGATCGAACTCACACATAACTTACAGATAA-T-CGATAGATATATGT-ATGCT 456 Query 298 CTCGGATACGACAAGAGCAGCAAATCCCACAAAATCTTGAGGTGT-ATTACTTGTTTGAG 356 ||||||||| ||||||||||||||||||||||||||||||||| | ||||||| | | | Sbjct 457 CTCGGATACAACAAGAGCAGCAAATCCCACAAAATCTTGAGGT-TCATTACTTACTGG-G 514 Query 357 ACCCCA-TTTTCATGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC 415 | |||| |||| | ||||||| |||||||||||| ||||||||||||||||||||| || Sbjct 515 ATCCCAATTTTGAAGAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTTG 574 Query 416 ATGTCACTCCAGACTGG-CAATTAGGGACTATTAAT-AGTGGCGTGTCTCTCAAGGGAAA 473 ||||||||||||||||| | || || | |||||| | ||||||||||||||||||||| Sbjct 575 ATGTCACTCCAGACTGGACGATAAGTCA-TATTAACCA-TGGCGTGTCTCTCAAGGGAAA 632 Query 474 TGCCTTCTGGGTTGCTGAA-GAGAAGTATTAC-GAAACAAGTGAAACAAACGAAGAGTTT 531 ||| | |||| ||||| || |||||||||| | |||||||| || || ||| | ||| Sbjct 633 TGCGTACTGGTTTGCT-AATGAGAAGTATT-CTGAAACAAG--AAG-AACCGACCATTTT 687 Query 532 TTCTTACTCTCTTTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTT 591 |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 688 TTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGACCGCTTTTGCCTCTTCCGTTT 747 Query 592 CAGTTTGTTGAATCTGAAGATGCTTTGAGTGTATC 626 |||||| || |||||||||||| |||||||||| Sbjct 748 GAGTTTGCTGTTTCTGAAGATGCTATGAGTGTATC 782 Score = 420 bits (227), Expect = 1e-116 Identities = 301/335 (90%), Gaps = 11/335 (3%) Strand=Plus/Plus Query 658 TATC-AG-CCGTGGGATACATTAATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCA 715 |||| || |||||||||||||||| ||||||||||||| | ||||||||||||||||||| Sbjct 779 TATCTAGTCCGTGGGATACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCA 838 Query 716 ACGCGGTGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCC 775 ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 839 ACGTGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAAAAAACTCATTGCCC 898 Query 776 CTCAGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTG 835 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 899 CTCAGTTTCAGTTTTACTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 958 Query 836 TTTTTGATAAAGGCTACA--GAATACAGCGCTA-CATAGCTTACATCATTGGAGTGGATG 892 ||||||||||| ||||| || | | |||| | |||||||||||||||||||||||||| Sbjct 959 TTTTTGATAAATACTACAACGA-T-CGGCGC-AGCATAGCTTACATCATTGGAGTGGATG 1015 Query 893 GATCCATGAAAGAAGTGGATCTTGGAGAATCAG-ACA-G-AAGGTGTTACCCAATTGTGT 949 ||||| | |||| ||||||||| |||||||| | | | | || |||||||||| |||||| Sbjct 1016 GATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCACTTGTGT 1075 Query 950 GGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984 | ||||||||||||||| ||||||||||||||||| Sbjct 1076 GCTCTTATGTTCCAAGTATAGTGCAACTTAATTAG 1110 > Ahg342623 jgi|Araly1|342623|fgenesh1_pg.C_scaffold_3002386 Length=1329 Score = 333 bits (180), Expect = 1e-90 Identities = 703/937 (75%), Gaps = 110/937 (12%) Strand=Plus/Plus Query 91 tcatGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTGATGATATATCT 150 ||||||||||| | ||||| | || ||||| ||||| ||||||| || ||| ||||| Sbjct 250 TCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTA---GACGAAGAAGACGATGTATCT 306 Query 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210 ||||||||||||||||||||||||||||||||||| | | ||| || |||||| Sbjct 307 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCAT-----T-ATGGAAGATAACACTAGG 360 Query 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACACATCAGTTC 270 | |||||||||||||||||||||||||||||| ||| |||| ||| |||||| | ||| Sbjct 361 ATTGTGGTTTGGAACCCGTATTGGGGGCATACCTGGTGGATCGTGCCTACACATAATTTC 420 Query 271 AACAAATTCGACAGCT-ATTCTTATGCTCTCGGATACGA-CAAGAGCAGCAAATC----C 324 ||||||| ||| | | || | |||||||| |||||| | || |||||||||||| | Sbjct 421 CACAAATTGGAC-GTTTATACGTATGCTCTTGGATACAAGCA-GAGCAGCAAATCATGTC 478 Query 325 -CA-C-A-AAA-TCTTGAGGTGTATT-ACTTGTT-TGAGACCCCAT-TTTCATGAGTTCA 376 || | | ||| ||||||| | |||| | || || | | | | | ||| ||| |||| Sbjct 479 GCAGCTACAAAATCTTGAGATTTATTGATTT-TTCTC-G-CACT-TGTTT--TGAATTCA 532 Query 377 TAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCACTCCAGACTGGCA-A 435 ||||||| || | |||||| ||||||||| |||| || ||||| ||||||| ||| | | Sbjct 533 AAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTGATGTCTCTCCAGATTGGAAGA 592 Query 436 TTAGGGACTATTA-A-TAGTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGGTTGCTGAAG 493 | || | | ||| | | ||||||||||||||||||||||| | | |||| ||||| | | Sbjct 593 T-AG--ATTCTTATAGTCGTGGCGTGTCTCTCAAGGGAAATACGTACTGGTTTGCT-A-G 647 Query 494 AGAAGTATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCTTTTGATTTCA 553 ||| | | | |||| ||| || | | ||| |||| ||| ||||||||||| Sbjct 648 AGA-G-AG---G---CAAG-GAAGCA---GTAC--TTT--CTTAGTCTGTTTTGATTTCA 691 Query 554 CAAGAGAGACATTTGGACCAC-TTTTGCCTCTTCCGTTTCAGTTTGT-TGAATCTGAAGA 611 ||||||||| |||| || ||| |||| ||||| ||| ||||| || | | | | | || Sbjct 692 CAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAGCC-GTAT-ATTTT-A-GA 746 Query 612 TGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCAGC-CGTGG- 669 | | ||||| |||| | ||||||||| |||||||| || ||||||| ||||| | | Sbjct 747 TACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAGCGC-TCAA 805 Query 670 GAT-A-CATTA-ATG-A--TGGAGATCTGGGTCACGTCTAAGA-TTGAGCCCAACGCGGT 722 ||| | || | ||| | ||||||||||| | || | || | |||||||||||||||| Sbjct 806 GATTATCAG-AGATGGAGATGGAGATCTGGATAACCACGAA-ACTTGAGCCCAACGCGGT 863 Query 723 GTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCCCTCAGTT 782 ||| ||||||||||||||||||||| || || | ||| | | |||| ||| || Sbjct 864 GTCGTGGAACAGCAAGGTGTTCTTAGCAATG-G-ATA-------T--T-GGCCTTCAATT 911 Query 783 TCAGTTTT--GTTTGGG--G-A-GTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGT 836 ||||||| ||| | | | | ||||||| || || |||||||||||||| | ||| || Sbjct 912 TCAGTTTCAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAGTTGTTGTGGT 971 Query 837 TTTTGATAAAG-GCTACAGAATAC--AGCG-C---T-ACA---TAGCTTACATCATTGGA 885 ||||||||||| | | | |||| || | | | ||| ||||||||||| ||||| Sbjct 972 TTTTGATAAAGAGAAA-A-AATATTTAGTGTCCACTCACAACATAGCTTACATCTTTGGA 1029 Query 886 GTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AGACAGAAGGT-GTTACCC 941 | ||||||| || || || |||||||||||||| ||| ||||| || | |||| || Sbjct 1030 GAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTGCAGACA-AATTTTGTTATCC 1088 Query 942 AATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTT 978 | ||||||| | ||||||||||||| ||||||| ||| Sbjct 1089 ACTTGTGTGCTGTTATGTTCCAAGTTTAGTGCAGCTT 1125 > Ahg930557 jgi|Araly1|930557|scaffold_303014.1 Length=643 Score = 291 bits (157), Expect = 9e-78 Identities = 494/647 (76%), Gaps = 61/647 (9%) Strand=Plus/Plus Query 369 TGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC-ATGTCACTCCAG 427 ||||| || |||||| || ||||||||| |||||||||||| || || |||||||||||| Sbjct 7 TGAGTACAAAATCTATGACTTTAACTCTGATTCATGGAGGG-TTATCGATGTCACTCCAG 65 Query 428 ACTGGCAATTAGGGACTATTAAT-A--GTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGG 484 ||||| | || | | | || || | ||||||| ||||||||||||||| | | ||| Sbjct 66 ACTGG--ACTATGTA-TTTTTATGACCGTGGCGTCTCTCTCAAGGGAAAT-ACAT-TGGT 120 Query 485 TTGCTGAAGAGAAG-TATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCT 543 ||||| |||| || | ||| | || | ||| | | ||||||| ||| | Sbjct 121 TTGCTAAAGACCAGCTTTTA-G----AA--G----AAA-G--TA--CTTTCTTAATCTGT 164 Query 544 TTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTTCAGTTTGTTGAA 603 |||||||| ||||| |||| ||||||||| | |||| || | |||| | || ||| | | Sbjct 165 TTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTATGAG-TTG-T-AT 221 Query 604 TCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCAG 663 | ||||| | || |||| |||| | ||| | ||| ||||||||||| ||||| | ||| Sbjct 222 TTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGTTTTGTTTCA- 280 Query 664 CCG-TGGGATACATTA-ATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAACGCGG 721 || |||||||||||| | ||| || || ||| | ||| ||||||||||||||||||||| Sbjct 281 ACGTTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATTGAGCCCAACGCGG 339 Query 722 TGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCA-TTGGCCCTCAG 780 |||||||||||||||||||||||||| | |||| ||| ||| | ||| ||| | | | Sbjct 340 TGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTCACTTG-CTTTGAC 398 Query 781 TTTCAG-TTTTGTT------TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT 833 |||||| ||||| | || | ||||||||||||||| |||||||||||||||| || Sbjct 399 TTTCAGATTTTGCTCACACATGCG-AGTTTCTTCATTGACAAGGAGAAGAAAGTCGCCGT 457 Query 834 TGTTTTTGATAAAGGCTAC-A--G-AA--TACAGCGC--TA-CA---TAGCTTACATCAT 881 || ||||||||| | | | | || || | | | | || ||||||||||| | Sbjct 458 AGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGTAGCTTACATCGT 517 Query 882 TGGAGTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AGACAGAAGGT-GTT 937 |||||||||||||||| ||||||||| ||||||||||||| ||||| || | ||| Sbjct 518 TGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGACA-AACATTGTT 576 Query 938 ACCCAATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984 | ||| ||||||| ||||||||||||||| |||| |||||||||||| Sbjct 577 ATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 623 > Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 Length=1047 Score = 268 bits (145), Expect = 4e-71 Identities = 374/480 (78%), Gaps = 34/480 (7%) Strand=Plus/Plus Query 531 TTTCTTACTCTCTTTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTT 590 ||||||| ||| ||||||||| ||||| |||| ||||||||| | |||| || | |||| Sbjct 576 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 635 Query 591 TCAGTTTGTTGAATCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGC 650 | || ||| | | | ||||| | || |||| |||| | ||| | ||| ||||||||||| Sbjct 636 TGAG-TTG-T-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 692 Query 651 TGTTTTATATCAGCCG-TGGGATACATTA-ATGATGGAGATCTGGGTCACGTCTAAGATT 708 ||||| | ||| || |||||||||||| | ||| || || ||| | ||| |||||||| Sbjct 693 AGTTTTGTTTCA-ACGTTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 750 Query 709 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTC 768 ||||||||||||||||||||||||||||||||||||||| | |||| ||| ||| | || Sbjct 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 810 Query 769 A-TTGGCCCTCAGTTTCAGTTTT-GTT------TGGGGAGTTTCTTCATTGACGAGGAGA 820 | ||| | | | |||||||||| | | || | ||||||||||||||| |||||| Sbjct 811 ACTTG-CTTTGACTTTCAGTTTTTGCTCACACATGCG-AGTTTCTTCATTGACAAGGAGA 868 Query 821 AGAAAGTCGCTGTTGTTTTTGATAAAGGCTAC-A--G-AA--TACAGCGC--TA-CA--- 868 |||||||||| || || ||||||||| | | | | || || | | | | || Sbjct 869 AGAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCG 928 Query 869 TAGCTTACATCATTGGAGTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AG 925 ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| || Sbjct 929 TAGCTTACATCGTTGGAGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATATGGAG 988 Query 926 ACAGAAGGT-GTTACCCAATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984 ||| || | |||| ||| ||||||| ||||||||||||||| |||| |||||||||||| Sbjct 989 ACA-AACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 1047 Score = 202 bits (109), Expect = 4e-51 Identities = 247/310 (80%), Gaps = 23/310 (7%) Strand=Plus/Plus Query 133 GAAGTTGATGATATATCTCAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCAGCAT 191 ||||| |||| || | ||| ||| | |||||||||||||||||||||||||||||| | | Sbjct 229 GAAGTAGATG-TA-A-CTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA-C-T 282 Query 192 CACCCAAGCCAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAAT 251 | ||| | | |||| | |||||||||| |||||||||| |||||| ||||||| || Sbjct 283 -A---AAGACTACACTAAGTTCGTGGTTTGTAACCCGTATTTGGGGCAAACCCGGTGGAT 338 Query 252 CGAG-CCCACACATCAGTTCAACAAATTCGACA-GCTATTCTTATGCTCTCGGATACGAC 309 || | ||| ||||| | ||||||| ||| ||| | ||| | ||||||||||||||||| Sbjct 339 CGTGTCCC-CACATAAATTCAACAGATTTGACTTG-TATACGAATGCTCTCGGATACGAC 396 Query 310 AAGAGCAGCAAATCCCACAAAATCTTGAGGTGTATT-ACTTGTTTGAGACCCC----A-T 363 ||||| ||||||||| |||||||||||| | | || | || ||| | |||| | | Sbjct 397 AAGAGTAGCAAATCCTACAAAATCTTGATATTTGTTGATTTCTTTTATCCCCCTGCTACT 456 Query 364 TTTCATGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC-ATGTCAC 422 ||| ||||| || |||||| || ||||||||| |||||||||||||| | | ||||||| Sbjct 457 TTTGTTGAGTACAAAATCTATGACTTTAACTCTGATTCATGGAGGGTTAT-CGATGTCAC 515 Query 423 TCCAGACTGG 432 |||||||||| Sbjct 516 TCCAGACTGG 525 > Ahg930559 jgi|Araly1|930559|scaffold_303016.1 Length=1149 Score = 263 bits (142), Expect = 2e-69 Identities = 697/942 (74%), Gaps = 130/942 (14%) Strand=Plus/Plus Query 91 tcatGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTGATGATATATCT 150 |||||||||| ||||||| | || || ||||||||| || |||| | | || ||||| Sbjct 271 TCATGTATAATGCGTGAAGGTGAACTTGTTAGCTTAGAAGATGAAG-TCA--ATGTATCT 327 Query 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210 ||||||||||||||||||||||||||||||||||| | | ||| || |||||| Sbjct 328 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTA---TGG---AAGATAATACTAGG 381 Query 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACA-CATCAGTT 269 | || ||||||||||||||||||||||| ||||||| |||||| | | | ||| | || Sbjct 382 GTTGTTGTTTGGAACCCGTATTGGGGGCAAACCCGGTTGATCGAGTCTA-AGCATGATTT 440 Query 270 C-AACAAATTCGA--CAGCTAT-TCTTATGCTCTCGGATACGACAAGAGCAGCAA---AT 322 | || ||||| | | | ||| | | |||||||||||||||| ||||||||||| || Sbjct 441 CCAAAAAATTT-ATTC-G-TATATGT-ATGCTCTCGGATACGAGAAGAGCAGCAAGTCAT 496 Query 323 -CC-CA-C-A-AAA-TCTTGAGGTGTATT-ACTTGTTTGAGACCCCATTT-TCATGAGTT 374 || || | | ||| ||||||| | |||| | || ||| ||| | || | |||||| Sbjct 497 GCCGCATCTACAAAATCTTGAGATTTATTGA-TT-TTTCT--CCC-ACTTATGTTGAGTT 551 Query 375 CATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCA-C--TCCAGACTG 431 | |||||||||| ||||||||||||||||||||| | || |||||| | |||| |||| Sbjct 552 TAAAATCTACGATATTAACTCTAATTCATGGAGGGATCTTGATGTCATCACTCCATACTG 611 Query 432 GCA-AT-TAGGGACTATTAATAGTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGGTTGCT 489 | || || | | || | |||| || ||| ||||||||||| | | |||| ||||| Sbjct 612 TAAGATATACGCTC-ATCG-TCGTGGTGTCTCTGTCAAGGGAAATACGTACTGGTTTGCT 669 Query 490 GAAGAGAAGTATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCTTTTGAT 549 | || || | || ||| || ||| || ||||| ||||||| Sbjct 670 -A-GA-AA-T----CGG--CAA-TGTAAC----------TT------ACTCTGTTTTGAT 702 Query 550 TTCACAAGAGAGACATTTGGACCACT-TTTGCCTCTTCCGTTTCAGTTTG-TTGAATCTG 607 ||||| ||||||| |||||| ||| | ||||||||| |||||||||||| || | || Sbjct 703 TTCACTAGAGAGAGATTTGGGCCA-TGTTTGCCTCTGCCGTTTCAGTTTTATT-ATTC-- 758 Query 608 AAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCA--GC- 664 | ||| || | ||| |||| | ||| ||||| ||||||||||| ||||||| ||| || Sbjct 759 A-GATACTGTCAGTCTATCTAGTGTCAGAGAAGAGCAGCTTGCGGTTTTATTTCAATGCT 817 Query 665 CGTGGGATACATTAATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCAA-CGCGGTG 723 | | |||||||| | | | | | | || ||||||||| | || |||| Sbjct 818 CCT---ATACATTAC--A-G-A--T--G----A-----AA-ATTGAGCCCTATCG-GGTG 855 Query 724 TCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGC-CCT--CAG 780 || |||||||| |||||||||||| ||||| | ||| ||| | | ||| ||| ||| Sbjct 856 TCGTGGAACAGAAAGGTGTTCTTAGCAGTG-G-ATATGAACCCAC-TTGTTTCCTTTCAG 912 Query 781 TTTCAGTTTTGTT-TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTT 839 |||||| || || || | ||||||||||||||||||||||| |||||||| |||||||| Sbjct 913 TTTCAGGTTAGTGCTGCG-AGTTTCTTCATTGACGAGGAGAATAAAGTCGCCGTTGTTTT 971 Query 840 TGATAAAGGCTAC-A-G----AAT-A-C---AG-CGCTACATAGCTTACATCATTGGAGT 887 |||||||| | | | | ||| | | | ||| || ||||||||||| ||||||| Sbjct 972 TGATAAAGACAAAGAAGGTTTAATGAACCCTACTCGCAACGTAGCTTACATCGTTGGAGT 1031 Query 888 GGATGGA-TCCATGAAAGAAGTGGATCTTGGAGAATCAGACAG--AAGGT--GTTACCCA 942 ||||||| || || |||||||||||||||||| ||| | ||| || | |||||||| Sbjct 1032 GGATGGAATCT-TGGAAGAAGTGGATCTTGGAGTATCTG-CAGCCAAATTTTGTTACCCA 1089 Query 943 ATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTT-AATTA 983 ||||||| ||||||||||| ||| ||||||| ||| ||||| Sbjct 1090 CTTGTGTGCTCTTATGTTCCGAGTTTAGTGCACCTTTAATTA 1131 > Ahg930556 jgi|Araly1|930556|scaffold_303013.1 Length=272 Score = 128 bits (69), Expect = 7e-29 Identities = 133/162 (82%), Gaps = 11/162 (7%) Strand=Plus/Plus Query 90 atcatGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTG-A-T-GATAT 146 |||||||||||| |||||||||||| |||||||| ||| ||| ||||| | | ||| | Sbjct 83 ATCATGTATAAAGCGTGAAGCTAAACTTATTAGCCTAGACGATTCAGTTGAAGTAGATGT 142 Query 147 ATCTCAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGA 205 | ||| ||| | |||||||||||||||||||||||||||||| | | | ||| | | | Sbjct 143 AACTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA-C-T-A---AAGACTACA 195 Query 206 CTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGT 247 ||| | |||||||||| |||||||||| |||||| ||||||| Sbjct 196 CTAAGTTCGTGGTTTGTAACCCGTATTTGGGGCAAACCCGGT 237 > Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 Length=981 Score = 121 bits (65), Expect = 1e-26 Identities = 230/303 (76%), Gaps = 37/303 (12%) Strand=Plus/Plus Query 150 TCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAG 209 ||||||||||||||||||||||||||||||||||||| | | | ||| ||| |||| Sbjct 219 TCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC--C-TGA---AAGACAACCCTAG 272 Query 210 GCTCGTGGTTTGGAACCCGTATTGGGGGCATACC-CGGTCAATCGA-GCCCACACATCAG 267 |||||| |||| ||||||||||| ||||| ||| |||| ||||| ||| ||| || | Sbjct 273 GCTCGTTGTTTTTAACCCGTATTGTGGGCA-ACCACGGTGGATCGAAGCC-ACATATAA- 329 Query 268 TTCAA-CA-A-ATTCGACAGCT-ATTC-TTATGCTCTCGGATACGACAAG-AGCAGCAAA 321 | || || | ||| || | | |||| || | |||| |||||| | | | | || |||| Sbjct 330 T--AATCAGAGATTGGA-ATTTTATTCGTTTT-CTCTGGGATACAATA-GCAACACCAAA 384 Query 322 TCCCACAAAATCTTGAGGTGTATTACTTGTTTGA-GACC----C-CATT---TT---CAT 369 ||||||||||||||||| | |||| || | | | | | | | || || | | Sbjct 385 TCCCACAAAATCTTGAGATTTATT--TTATATCATGGTCTTTTCTCTTTGGCTTTGGC-T 441 Query 370 GAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCACTCCAGAC 429 ||||||| ||||||||| ||||||||| |||||||||||||| || |||| |||| |||| Sbjct 442 GAGTTCAAAATCTACGACTTTAACTCTGATTCATGGAGGGTTCTTGATGTTACTCGAGAC 501 Query 430 TGG 432 ||| Sbjct 502 TGG 504 > Ahg925743 jgi|Araly1|925743|scaffold_201304.1 Length=1229 Score = 115 bits (62), Expect = 6e-25 Identities = 148/187 (79%), Gaps = 15/187 (8%) Strand=Plus/Plus Query 798 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTTTGATAAAG--GCTACAG- 854 |||||||||||||||||||||||||||||| ||||| |||||||| |||| | | | Sbjct 975 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGAAGGAAAACC 1034 Query 855 AATACAGCGCTACAT-AGCTTAC-ATCATTGGAGTGGATGGATCCATGAAAGAAGT-GGA 911 |||| ||| |||| | ||| |||||||||| |||| ||| | | || ||| | ||| Sbjct 1035 AATAT-GCG--ACATTA--TTAATATCATTGGAGAGGATAGATGCTT-AATGAAATTGGA 1088 Query 912 TCTTGGAGAATC---AGACAGAAGGTGTTACCCAATTGTGTGGTCTTATGTTCCAAGTCT 968 ||||||||| | ||||| |||||||| ||| ||||||| |||||||||||||| | Sbjct 1089 GCTTGGAGAACCCGCAGACAAAAGGTGTTGGCCACTTGTGTGCCCTTATGTTCCAAGTGT 1148 Query 969 AGTGCAA 975 ||||||| Sbjct 1149 AGTGCAA 1155 > Ahg930371 jgi|Araly1|930371|scaffold_302828.1 Length=984 Score = 106 bits (57), Expect = 3e-22 Identities = 90/105 (86%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210 |||||||||||||||||||||||||||||||||||| | | | ||| ||| ||||| Sbjct 284 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATC--C-TGA---AAGACAACCCTAGG 337 Query 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAG 255 || |||||||||||||||||||| ||||| ||||||| |||||| Sbjct 338 CTTGTGGTTTGGAACCCGTATTGTGGGCAAACCCGGTGGATCGAG 382 > Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 Length=1608 Score = 104 bits (56), Expect = 1e-21 Identities = 152/195 (78%), Gaps = 19/195 (10%) Strand=Plus/Plus Query 798 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTTTGATAAAG--GCTACAG- 854 |||||||||||||||||||||||||||||| ||||| |||||||| |||| | | | Sbjct 1371 GAGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGAAAAAGAAGGAAAAAC 1430 Query 855 AATACAGCG-C-T-AC--AT-AG-CT-TACAT--CATTGGAGTGGATGGATCCATGAAAG 904 |||| ||| | | || || | || || || |||||||| |||||||| ||| || | Sbjct 1431 AATAT-GCGACCTCACTCATGACACTATAAATATCATTGGAGAGGATGGATGCAT-AATG 1488 Query 905 AAGT-GGATCTTGGAGAATC---AGACAGAAGGTGTTACCCAATTGTGTGGTCTTATGTT 960 || | ||| ||||||||| | ||||| || |||| ||| ||||||| ||||||||| Sbjct 1489 AAATTGGAGCTTGGAGAACCCGCAGACAAAAACTGTTGGCCACTTGTGTGCTCTTATGTT 1548 Query 961 CCAAGTCTAGTGCAA 975 |||||| |||||||| Sbjct 1549 CCAAGTGTAGTGCAA 1563 > Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 Length=1782 Score = 78.7 bits (42), Expect = 8e-14 Identities = 147/196 (75%), Gaps = 14/196 (7%) Strand=Plus/Plus Query 146 TATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGA 205 ||||| || ||||||||||||||||||||||||||||| | | |||| | | || || Sbjct 977 TATCTAAAATCTTTCACTGCGACGGTTTATTGTTATGCGT-A--ATCAAAGATGACACGA 1033 Query 206 CTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACACATC 265 || |||| |||| ||||| || |||| |||||| || ||| ||| | |||| ||| Sbjct 1034 ATAAGCTCTTGGTCTGGAATCCTTATTTGGGGCAAACGAGGTGGATCCAACCCAGACAG- 1092 Query 266 AGTT-CAACAAATTCGACAGCTATTCTTATGCTCTCGGATACGACAAGAGCAGCAAATCC 324 |||| | ||| ||| ||||| | | ||||||| ||| | ||||| | | | ||| | Sbjct 1093 AGTTTCCACAGATTAGACAG-T-T----ATGCTCTTGGACATGACAACAACGGTAAA-C- 1144 Query 325 CACAAAATCTTGAGGT 340 ||||||||||||||| Sbjct 1145 -ACAAAATCTTGAGGT 1159 > Ahg930411 jgi|Araly1|930411|scaffold_302868.1 Length=1141 Score = 67.6 bits (36), Expect = 2e-10 Identities = 42/45 (93%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 799 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTTTGAT 843 |||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 840 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTTGAT 884 > Ahg929032 jgi|Araly1|929032|scaffold_301489.1 Length=1468 Score = 65.8 bits (35), Expect = 6e-10 Identities = 41/44 (93%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 796 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTTTT 839 |||||||||||||||||||||||||||||| | ||||| ||||| Sbjct 1353 GGGAGTTTCTTCATTGACGAGGAGAAGAAAATTGCTGTGGTTTT 1396 > Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 Length=2011 Score = 65.8 bits (35), Expect = 6e-10 Identities = 44/48 (92%), Gaps = 2/48 (4%) Strand=Plus/Plus Query 798 GAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTG-TTTTTGATA 844 ||| |||||||||||||||||||||||||||| ||| | ||||||||| Sbjct 988 GAGCTTCTTCATTGACGAGGAGAAGAAAGTCGTTGT-GCTTTTTGATA 1034 > Ahg929886 jgi|Araly1|929886|scaffold_302343.1 Length=742 Score = 62.1 bits (33), Expect = 8e-09 Identities = 37/39 (95%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 799 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTT 837 |||||||||||||||||||||||||||||||| || ||| Sbjct 403 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441 > Ahg929147 jgi|Araly1|929147|scaffold_301604.1 Length=1290 Score = 58.4 bits (31), Expect = 1e-07 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 799 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTG 832 ||||||||||||||||||||||||||||| |||| Sbjct 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTG 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36559877403 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5