BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22780.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1 1823 0.0
Ahg930271 jgi|Araly1|930271|scaffold_302728.1 516 3e-145
Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1 383 4e-105
> Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1
Length=2378
Score = 1823 bits (987), Expect = 0.0
Identities = 1178/1269 (93%), Gaps = 18/1269 (1%)
Strand=Plus/Plus
Query 1 ACACTGTTTCGCACCGGCGCGGACAAAG-----ttttttttttGTTCGAAATCCGACAAC 55
|||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 1 ACACTGTTTCGCACCGGCGCGGACAAAGTTTTTTTTTTTTTTTTTTCGAAATCCAACAAC 60
Query 56 AACCCTAGATTATAAACAAA-ATAAACCAGTGTCTGCATAGAGGCAATGTAGATGTGATT 114
||||||||||| ||| ||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 61 AACCCTAGATT-GAAAAAAACAAAAAACAGTGTCTGCATAGAGGCAATGTAGATTTGATT 119
Query 115 TTTGCTGGAAAATGGACAAATCC-CAGAAGAATCCTACTTCCCAGATCGGAACTTCAACT 173
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGCTGGAAAATGGACAAA-CCTCAGAAGAATCCTACTTCCCAGATCGGAACTTCAACT 178
Query 174 CCCAAATCCAAATTCGAGGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATT 233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 CCCAAATCCAAATTCGAGGATTCTCCAGTGTTCAACTACATAAGCAATCTCTCTCCAATT 238
Query 234 GAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTCCT 293
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 GAGTCTGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTGAGTTTCACATCTCCT 298
Query 294 CCTCCTGTGTTT-ACTTCTCCTCACGTCATTTCTCACAGAGAATCCAGATTCTTCAGATG 352
|||||||| ||| |||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 299 CCTCCTGT-TTTCACTTCTCCTCACGTCAATTCTCATAGAGAATCCAGATTTTTCAGATG 357
Query 353 TCATAACTCTGTTGATCGTTCAAAGCACTTAGAATCTTTAGATGGATCTGCTGTTAAAGG 412
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 358 TCATAACTCTGTTGATCGTGCAAAGCACTTAGAGTCTTTAGATGGATCTGCTATTAAAGA 417
Query 413 AGAAGTTGTAGTACCA-TTAGTTGAAGATCTAAATAAAGAAGCTTCTTTGGAAGATGAAG 471
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 418 AGAAGTTGTAGTACCAGTTA-TTGAAGATCTAAACAAAGAAGCTTCTTTGGAAGATGAAG 476
Query 472 AAGAAACTTCTGTTGAAACGTCTTCTGAGCTGCCACAGATCATGAAGTTCGATAGCCAAA 531
|||||||||| |||||||||||| |||||||||||||||| ||||||| | |||||||
Sbjct 477 AAGAAACTTCCATTGAAACGTCTTATGAGCTGCCACAGATCTTGAAGTTTGGCAGCCAAA 536
Query 532 CTTCTGAGCATAGTGATTCACCTTGCACTGAAGATGTTGTTATTGAAGCTTCATCTGATC 591
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCCTGAGGATAGTGATTCACCTTGCACTGAAGATGTTGTTATTGAAGCTTCATCTGATC 596
Query 592 CTCCTCGAGGAGACAATGGTTCGTCATCCGAGGATGTCACGATGGGACTTCAGAATATGC 651
|||||||||||||| ||||||||| ||||||||||| | |||||| |||||||| ||||
Sbjct 597 CTCCTCGAGGAGACGGTGGTTCGTCTTCCGAGGATGTTAAGATGGGGCTTCAGAAGATGC 656
Query 652 TTGTTGTTCGGGAAGGGAATGACACTCCTGGTTGTGGACGTTTGATCTCAGATGCAACTG 711
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct 657 TTGTTGTTCGGGAAGAGAAAGACACTCCTGATTGTGGACGTTTGATCTCAGATGCTACTG 716
Query 712 AGCTGTTAGTATTTCGATCTCCGAATGATTCTGAGGCTTTTAGATGCTTGGTCGATAAAA 771
|||||||||||||| |||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 717 AGCTGTTAGTATTTAGATCTCCGAATGATTCAGAGGCTTTTAGATGTTTGGTGGATAAAA 776
Query 772 TATCAAGCTCAGAAAGACGGTTCTGTGCTGGTGTCAAGTCTACAAAGCGGCCTGATATCA 831
|||| ||||| |||||||||||||| |||||||||||||| |||||||||||| | ||||
Sbjct 777 TATCGAGCTCGGAAAGACGGTTCTGCGCTGGTGTCAAGTCAACAAAGCGGCCTAAAATCA 836
Query 832 ACA-AAGATATTCCAGCCAATGGATCTAGTAATGAAAATCAGCCTTTGGCTGTGCTTCCT 890
| ||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 837 -CTGAAGATGTTCCAGCCAATGGATCCAGTAATGAAAATGAGCCTTTAACTGTGCTTCC- 894
Query 891 ACAAACGAGTCTGTCTTTAACTTGCATCGTGGTGGCATGCGAAGACGCTGCCTTGACTTT 950
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 -CAA-CGAGTCTGTCTTTAACTTGCATCGTGGTGGCATGCGAAGACGCTGCCTTGACTTT 952
Query 951 GAGATGCCAGGGAAACGGAAGAAGGATATTGTTGATGATCAGCAATCTGTGTGTGACAAT 1010
|||||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct 953 GAGATGCCAGGGAAGCGGAAGAAAGATATAGCTGATGATCATCAATCTGTGTGTGACAAT 1012
Query 1011 AATGTGGCTGGTGAATCTTCCTCGAGCTGTGTTGTACCTGGTATTGGTCTTCATCTAAAC 1070
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1013 AATGTGGCTGGTGAATCTTCCTCGAGATGTGTTGTACCTGGTATTGGTCTTCATCTAAAC 1072
Query 1071 GCCGTTGCAATGTCTGCAAAGGACAGTAACATCAGTGTCATACATGGCTATTCCATATCT 1130
||||||||||||||||||||||||| |||||| | | ||||||||| |||||||||||||
Sbjct 1073 GCCGTTGCAATGTCTGCAAAGGACATTAACATTAATCTCATACATGACTATTCCATATCT 1132
Query 1131 GGAGAGATTCAAAAGAGTTTCTCAGGCTCTACCACTCCAATTCAGTCCCAAGACACTGTG 1190
|| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1133 GGGGAGATTCAAAAGAGTTTCTCAGGCTCTATTACTCCAATTCACTCCCAAGACACTGTG 1192
Query 1191 CAAGAAACTTCGGACCAGGCAGAAAACGAACCTGTAGAAGAAGTTCCCAAAGCATTGGTG 1250
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1193 CAAGAAACTTCGGACCAGGCAGAAAATGAACCTGTAGAAGAAATTCCCAAAGCATTGGCA 1252
Query 1251 TTCCCAGAG 1259
|||||||||
Sbjct 1253 TTCCCAGAG 1261
Score = 1783 bits (965), Expect = 0.0
Identities = 1078/1131 (95%), Gaps = 13/1131 (1%)
Strand=Plus/Plus
Query 1285 AGATGCGTAAATCTGAACAAGCTGGGGAGGGTGAGTCATGTAAACGATGCAACTGCAAAA 1344
||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1258 AGA-GCGTAAATCTGAACAAGCTGGAGAGGGTGAGTCATGTAAGCGATGCAACTGCAAAA 1316
Query 1345 AGTCTAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGC 1404
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGTCAAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGC 1376
Query 1405 CATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCC 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCC 1436
Query 1465 GCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAATGCAG 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1437 GCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAGCGCAG 1496
Query 1525 ATTCCATCATGGAAGCTAGTGATGATGCCAGTAAAACCCCGGCTTCTGCACGACACAAAC 1584
||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1497 ATTCCGTCATGGAAGCTGGTGATGATGCAAGTAAAACCCCAGCTTCTGCACGACACAAAC 1556
Query 1585 GTGGCTGCAACTGCAAGAAATCAAACTGTATGAAGAAATACTGTGAATGCTATCAGGGTG 1644
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1557 GCGGCTGCAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTG 1616
Query 1645 GAGTCGGCTGTTCCATGAACTGTAGATGCGAAGGATGCACAAA-TGTATTCGGCAGAAAA 1703
|||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 1617 GAGTCGGCTGTTCCATGAACTGTAGATGTGAAGGATGC-CAAAATGTATTCGGCAGAAAA 1675
Query 1704 GATGGGTCTTTACTTGTTATCATGGAAAGCAAACTAGAGGAGAATCAGGAGACATATGAG 1763
|| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1676 GAAGGGTCTTTACTTGTTATCATGGAGAGCAAACTAGAGGAGGATCAGGAGACATATGAG 1735
Query 1764 AAAAGAATAGCAAAAATCCAACACAACGTCGAGGTGTCGAAAGAAGTGGAGCAGAACCCA 1823
||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 1736 AAAAGAATAGCAAAAATTCAACACAACATTGAAGTGTCGAAAGAAGTGGAGCAGAACCCA 1795
Query 1824 AGTTCTGATCAACCTTCGACACCACTGCCACCGTACAGACATTTGGTGGTTCATCAGCCA 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AGTTCTGATCAACCTTCGACACCACTGCCACCGTACAGACATTTGGTGGTTCATCAGCCA 1855
Query 1884 TTCTTGTCTAAGAACAGACTGCCTCCGACACAGTTTTTTCTTGGCACAGGTTCTTCCTCT 1943
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1856 TTCTTGTCTAAGAACAGACTGCCTCCGACGCAGTTTTTTCTTGGCACGGGTTCTTCCTCT 1915
Query 1944 TTCAGAAAACCAAACAGTGATTTGGCGCAATCACAGAATGAGAAGAAGCCTCTTGAAACT 2003
|||||||||||| | |||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 1916 TTCAGAAAACCAGATAGTGGTTTGACACAATCACAGAATGAGAAGAAGCCTCTTGAAACT 1975
Query 2004 GTGACTGAGGACAAAACAGAGATTATGCCTGAGATTCTCCTCAATTCCCCTATAGCTAAC 2063
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GTGGCTGAAGACAAAACAGAGATTATGCCTGAGATTCTCCTCAATTCCCCTATAGCTAAC 2035
Query 2064 ATCAAGGCCATCTCTCCCAACAGCAAGAGAGTCTCTCCCCCTCAACCCGGCTCCTCGGAG 2123
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2036 ATCAAGGCCATCTCCCCCAACAGCAAGAGAGTCTCTCCCCCTCAACCCGGCTCCTCAGAA 2095
Query 2124 TCAGGCTCAATCCTAAGGAGAAGAGGTAATGGCCGGAAGCTGATACTACGGTCTATTCCA 2183
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TCGGGCTCAATCCTAAGGAGGAGAGGTAATGGCCGGAAGCTGATACTACGGTCTATTCCA 2155
Query 2184 GCATTTCCTTCTCTCAACCCAAATCAGTGAATCAAAAACAATTTGGTTAAGCTATGGAAA 2243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2156 GCATTTCCTTCTCTCAACCCAAATCAGTGAATCAAAAACAATATGGTTAAGCTATGGAAA 2215
Query 2244 AATTCTTTGTATCTTTGTAATGTTCCAGATCCTATTAGCCTATCATTGTTTCCATAACAT 2303
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2216 AATTCTT-GTATCTTTGTAATGTTCCAGATCCTGTTAGCCTATCACTGTTTCCATAACAT 2274
Query 2304 AAGGCATAAGCAACGTTATTGTAAGATACTTT-ATTCTAGTAGTAGTAGGTAATGTAATA 2362
||||||||||||||||| |||||||||||||| |||||||||| ||| || | ||||
Sbjct 2275 AAGGCATAAGCAACGTTCTTGTAAGATACTTTCATTCTAGTAG--GTAA-TA-T--AATA 2328
Query 2363 GT-ACATTCTAGTTCATAATCTTCCAGAAAGAACGTCCTAAACTGGACTTT 2412
| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2329 -TCACATTCTAGTTCATAATCTTCCAGAAAGAACATCCAAAACTGGACTTT 2378
> Ahg930271 jgi|Araly1|930271|scaffold_302728.1
Length=1915
Score = 516 bits (279), Expect = 3e-145
Identities = 389/442 (88%), Gaps = 7/442 (2%)
Strand=Plus/Plus
Query 1278 AAGAA-AAAGATGCGTAAATCTGAACAAGCTGGGGAGGGTGAG---TCATGTAAACGATG 1333
||||| ||| | |||||| || |||||| | || || || ||| ||||||||||| ||
Sbjct 986 AAGAAGAAA-AGGCGTAAGTCCGAACAATCAGGAGAAGGCGAGTCCTCATGTAAACGGTG 1044
Query 1334 CAACTGCAAAAAGTCTAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTA 1393
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1045 TAACTGCAAAAAATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGAGTTTA 1104
Query 1394 TTGCATAGAGCCATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGT 1453
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1105 TTGCATAGAGCCATGTTCATGTATAGATTGCTTCAATAAACCTATCCATGAAGACGTTGT 1164
Query 1454 TTTGGCTACCCGCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCAT 1513
||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1165 CCTGGCTACTCGTAAACAGATTGAATCCCGCAATCCGCTTGCATTTGCTCCTAAAGTCAT 1224
Query 1514 CAGAAA-TGCAGATTCCATCATGGAAGCTAGTGATGATGCCAGTAAAACCCCGGCTTCTG 1572
|||||| | | ||||||||||| |||| | |||| ||||| || ||||| || ||||| |
Sbjct 1225 CAGAAACT-CGGATTCCATCATTGAAGTTGGTGAGGATGCAAGCAAAACTCCAGCTTCAG 1283
Query 1573 CACGACACAAACGTGGCTGCAACTGCAAGAAATCAAACTGTATGAAGAAATACTGTGAAT 1632
| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1284 CGCGACACAAACGAGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAAT 1343
Query 1633 GCTATCAGGGTGGAGTCGGCTGTTCCATGAACTGTAGATGCGAAGGATGCACAAATGTAT 1692
|||||||||| ||||| |||||||| || ||||||||||| |||||||| | ||||| ||
Sbjct 1344 GCTATCAGGGCGGAGTTGGCTGTTCTATAAACTGTAGATGTGAAGGATGTAAAAATGCAT 1403
Query 1693 TCGGCAGAAAAGATGGGTCTTT 1714
| ||||||||||||||||||||
Sbjct 1404 TTGGCAGAAAAGATGGGTCTTT 1425
> Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1
Length=2103
Score = 383 bits (207), Expect = 4e-105
Identities = 368/444 (83%), Gaps = 18/444 (4%)
Strand=Plus/Plus
Query 1364 TTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGCCATGTTCATGTATAGATTG 1423
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
Query 1424 CTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCG 1483
|||||| ||||||||||||||||| ||| |||| || ||||||||||||||||| ||
Sbjct 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
Query 1484 AAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAA-TGCAGATTCCAT-CATGGAAGCT 1541
||||||||||||||||||||||||||||| || || | | || || | | | ||| |
Sbjct 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACT-CTGAGTCGGTTC-TAGAAACC 1269
Query 1542 AGTGATGATGCCAGTAAAACCCCGGCTTCTGCACGACACAAACGTGGCTGCAACTGCAAG 1601
| |||||||| || ||||| || |||||||| || || |||||||||||||||||||||
Sbjct 1270 GGGGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAG 1329
Query 1602 AAATCAAACTGTATGAAGAAATACTGTGAATGCTATCAGGGTGGAGTCGGCTGTTCCATG 1661
|||||||||||| |||| ||||| || ||||||||||||||||| || |||||||||||
Sbjct 1330 AAATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATA 1389
Query 1662 AACTGTAGATGCGAAGGATGCACA-AATGTATTCGGCAGAAAAGATGGGTCTTT-ACTTG 1719
||||||||||| |||||||| | | || | ||| ||| | ||||||||||||| | |||
Sbjct 1390 AACTGTAGATGTGAAGGATGTA-AGAACGCATTTGGCCGCAAAGATGGGTCTTCCA-TTG 1447
Query 1720 TTATCATGGAAAGCA-AACTAGAGGAG-AATCAGGAGACATATGAGAAAAG-A-AT-AGC 1774
| ||||||| ||| ||| ||||||| || | || |||| ||||||||| | | |||
Sbjct 1448 --A-CATGGAA-GCAGAACAAGAGGAGGAAA-ATGAAACATCTGAGAAAAGCAGAACAGC 1502
Query 1775 AAAAATCCAACACAACGTCGAGGT 1798
||| |||||| ||| | |||||
Sbjct 1503 CAAAGCCCAACAGAACATTGAGGT 1526
Score = 60.2 bits (32), Expect = 7e-08
Identities = 48/55 (87%), Gaps = 4/55 (7%)
Strand=Plus/Plus
Query 911 CTTGCATCGTGGTGGCATGCGAAGACGCTGCCTTGACTTTGAGATGCCAGGGAAA 965
||||||||| ||| || |||||||||||||||||||||||||||| ||||||
Sbjct 756 CTTGCATCGCGGT---ATAAGAAGACGCTGCCTTGACTTTGAGATGCC-GGGAAA 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90997595305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5