BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22800.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951789 jgi|Araly1|951789|scaffold_16600003.1 1659 0.0
Ahg930274 jgi|Araly1|930274|scaffold_302731.1 1653 0.0
> Ahg951789 jgi|Araly1|951789|scaffold_16600003.1
Length=1125
Score = 1659 bits (898), Expect = 0.0
Identities = 1048/1119 (94%), Gaps = 15/1119 (1%)
Strand=Plus/Plus
Query 73 TCATTAGTCATGAGAGAAGACACCTTCT-TCTTCCAGTGGTGGTTCTTGGTCTCTGGTCT 131
|||| | ||||||||||||| ||||| | | ||||| ||| ||||| ||| || ||||||
Sbjct 13 TCATCACTCATGAGAGAAGAAACCTTATAT-TTCCAATGGCGGTTCATGGCCTTTGGTCT 71
Query 132 CAGCTTCATCTTCCTTCTTCCTCAAGCTTTCACCTACCATACTCCTCCAATAAACCCGTG 191
|| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 72 CATCTTCCTCTTCCTTCTTCCTCAAGCTTTCACCTATGATACTCCTCCCATAAACCCGTG 131
Query 192 CT-TCGCTCA---TCCTTTTCTTCCTCCTATCACAAACCCGAGGCTCTTAAAAGCTT-TC 246
|| | || || ||||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 132 CTAT-GCACATGCTCCTTTTCTTCCTCCTATCGCAAACCCTAGGCTCTTAAAAGCTTAT- 189
Query 247 ACAGCTCTTCAAGCTTGGAAGTTCACCATAACCTCTGACCCAAACGGCTTCACTTCTAAC 306
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 190 GCAGCTCTTCAAGCTTGGAAGTTCACCATAACTTCTGACCCAAACGGCTTCACTTCTAAC 249
Query 307 TGGTGCGGTCCTAATGTTTGTAACTACACAGGCGTGTTTTGTGCACCGGCTCTAGATAAC 366
||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 250 TGGTGTGGTCCTCATGTTTGTAACTACACAGGCGTGTATTGTGCACCGGCTTTAGATAAC 309
Query 367 CCTTATGTCTTAACCGTCGCTGGTATAGACTTGAACCATGCTAATATCGCCGGTTATCTC 426
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 310 CCTTATGTCTTAACCGTCGCTGGTATAGACTTAAACCATGCCAATATCGCCGGGTATCTC 369
Query 427 CCTTTAGAGCTTGGTCTCTTAACCGATCTTGCCTTGTTCCATATCAATTCCAACCGTTTT 486
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 370 CCTATAGAGCTCGGTCTCTTAACCGATCTTGCCTTGTTCCATATCAACTCCAACCGTTTT 429
Query 487 CAAGGTCAACTTCCCAAAACTCTAAAATGTCTCCATCTTCTCCATGAGCTTGACGTCAGC 546
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 430 CAAGGTCAACTTCCCAAAACTCTAAAATGTCTCGAGCTTCTCCATGAGCTTGACGTCAGC 489
Query 547 AACAATAAACTCTCCGGCGAGTTTCCTTCCGTAATCTTCTCTTTGCCTTCCTTGAAGTTT 606
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 490 AACAATAAACTCTCCGGCGAGTTTCCTTCAGTAATCTTCTCTTTGCCTTCCTTGAAGTTT 549
Query 607 CTCGACATTAGGTTCAATGAGTTCCAAGGTGATGTTCCTAG-CCAACTCTTTGACCTAAA 665
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 550 CTCGACATTAGGTTCAATGAGTTCCAAGGAGATGTTCCT-GACCAACTCTTTGACCTAAA 608
Query 666 CCTCGACGCTCTCTTCATTAACGACAACAAATTCCAGTTTAGGTTACCGAGAAACATCGG 725
||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 609 CCTTGACGCTCTCTTCATTAACGACAACAAGTTCCAGTTTAGGTTACCGAAAAACATTGG 668
Query 726 AAACTCTCCGGTTTCTGTTCTTGTCTTGGCCAACAACGATCTCCAAGGATCTTGTGTACC 785
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 AAACTCTCCGGTTTCGGTTCTTGTCTTGGCCAACATCGATCTCCAAGGATCTTGTGTACC 728
Query 786 TCCAAGTTTCTACAAAATGGGGAAAACATTACACGAAATCATTATCACGAACTCACA-AC 844
||| |||||||||||||||||||||||||| |||||| |||||||| | |||||||| |
Sbjct 729 TCCGAGTTTCTACAAAATGGGGAAAACATTGCACGAACTCATTATCTCCAACTCACAGA- 787
Query 845 TAACCGGTTGTTTAAACCGGGAAATCGGTTTGCTT-AACCAGTTGACGGTTTTCGACGTG 903
||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 788 TAACCGGTTGTTTAAACCGGGAAATCGGTAT-ATTAAACCAGTTGACGGTTTTTGACGTG 846
Query 904 AGTTACAACAACTTGGTGGGTTCGTTGCCGGAGACTATAGGTGATATGAAGAGTTTAGAG 963
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 847 AGTTACAACAACTTGGTGGGTTCGTTACCGGAGACTATAGGTGATATGAAGAGTTTGGAG 906
Query 964 CAGTTAAACATTGCGCATAACAAATTCTCCGGCTACATTCCGGAGAGTATCTGCCGATTA 1023
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 907 CAGTTAAACATCGCGCATAACAAATTTTCCGGCTACATTCCGGAGAGTATCTGCCGATTA 966
Query 1024 CCAAGGCTCGAGAACTTCACTTACTCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGT 1083
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CCAAGCCTCGAGAACTTCACTTACTCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGT 1026
Query 1084 TTGAGGCTTCAAGAGTTTGATGATCGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGG 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CTGAGGCTTCAAGAGTTTGATGATCGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGG 1086
Query 1144 TCTCTCGCTGAATGCAAATCCTTTTCTTCTTATCCTATT 1182
|||| ||||||||| |||||||||||||||||||||||
Sbjct 1087 TCTCCCGCTGAATGTTAATCCTTTTCTTCTTATCCTATT 1125
> Ahg930274 jgi|Araly1|930274|scaffold_302731.1
Length=1366
Score = 1653 bits (895), Expect = 0.0
Identities = 1016/1073 (95%), Gaps = 13/1073 (1%)
Strand=Plus/Plus
Query 156 AGCTTTCACCTACCATACTCCTCCAATAAACCCGTGCT-TCGCTCA---TCCTTTTCTTC 211
|||||||||||| |||||||||| ||||||||||||| | || || |||||||||||
Sbjct 248 AGCTTTCACCTATGATACTCCTCCCATAAACCCGTGCTAT-GCACATGCTCCTTTTCTTC 306
Query 212 CTCCTATCACAAACCCGAGGCTCTTAAAAGCTT-TCACAGCTCTTCAAGCTTGGAAGTTC 270
|||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 307 CTCCTATCGCAAACCCTAGGCTCTTAAAAGCTTAT-GCAGCTCTTCAAGCTTGGAAGTTC 365
Query 271 ACCATAACCTCTGACCCAAACGGCTTCACTTCTAACTGGTGCGGTCCTAATGTTTGTAAC 330
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 366 ACCATAACTTCTGACCCAAACGGCTTCACTTCTAACTGGTGTGGTCCTCATGTTTGTAAC 425
Query 331 TACACAGGCGTGTTTTGTGCACCGGCTCTAGATAACCCTTATGTCTTAACCGTCGCTGGT 390
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 TACACAGGCGTGTATTGTGCACCGGCTTTAGATAACCCTTATGTCTTAACCGTCGCTGGT 485
Query 391 ATAGACTTGAACCATGCTAATATCGCCGGTTATCTCCCTTTAGAGCTTGGTCTCTTAACC 450
|||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 486 ATAGACTTAAACCATGCCAATATCGCCGGGTATCTCCCTATAGAGCTCGGTCTCTTAACC 545
Query 451 GATCTTGCCTTGTTCCATATCAATTCCAACCGTTTTCAAGGTCAACTTCCCAAAACTCTA 510
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 546 GATCTTGCCTTGTTCCATATCAACTCCAACCGTTTTCAAGGTCAACTTCCCAAAACTCTA 605
Query 511 AAATGTCTCCATCTTCTCCATGAGCTTGACGTCAGCAACAATAAACTCTCCGGCGAGTTT 570
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAATGTCTCGAGCTTCTCCATGAGCTTGACGTCAGCAACAATAAACTCTCCGGCGAGTTT 665
Query 571 CCTTCCGTAATCTTCTCTTTGCCTTCCTTGAAGTTTCTCGACATTAGGTTCAATGAGTTC 630
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CCTTCAGTAATCTTCTCTTTGCCTTCCTTGAAGTTTCTCGACATTAGGTTCAATGAGTTC 725
Query 631 CAAGGTGATGTTCCTAG-CCAACTCTTTGACCTAAACCTCGACGCTCTCTTCATTAACGA 689
||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 726 CAAGGAGATGTTCCT-GACCAACTCTTTGACCTAAACCTTGACGCTCTCTTCATTAACGA 784
Query 690 CAACAAATTCCAGTTTAGGTTACCGAGAAACATCGGAAACTCTCCGGTTTCTGTTCTTGT 749
|||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 785 CAACAAGTTCCAGTTTAGGTTACCGAAAAACATTGGAAACTCTCCGGTTTCGGTTCTTGT 844
Query 750 CTTGGCCAACAACGATCTCCAAGGATCTTGTGTACCTCCAAGTTTCTACAAAATGGGGAA 809
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 845 CTTGGCCAACATCGATCTCCAAGGATCTTGTGTACCTCCGAGTTTCTACAAAATGGGGAA 904
Query 810 AACATTACACGAAATCATTATCACGAACTCACA-ACTAACCGGTTGTTTAAACCGGGAAA 868
|||||| |||||| |||||||| | |||||||| | ||||||||||||||||||||||||
Sbjct 905 AACATTGCACGAACTCATTATCTCCAACTCACAGA-TAACCGGTTGTTTAAACCGGGAAA 963
Query 869 TCGGTTTGCTT-AACCAGTTGACGGTTTTCGACGTGAGTTACAACAACTTGGTGGGTTCG 927
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 964 TCGGTATG-TTAAACCAGTTGACGGTTTTTGACGTGAGTTACAACAACTTGGTGGGTTCG 1022
Query 928 TTGCCGGAGACTATAGGTGATATGAAGAGTTTAGAGCAGTTAAACATTGCGCATAACAAA 987
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1023 TTACCGGAGACTATAGGTGATATGAAGAGTTTGGAGCAGTTAAACATCGCGCATAACAAA 1082
Query 988 TTCTCCGGCTACATTCCGGAGAGTATCTGCCGATTACCAAGGCTCGAGAACTTCACTTAC 1047
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1083 TTTTCCGGCTACATTCCGGAGAGTATCTGCCGATTACCAAGCCTCGAGAACTTCACTTAC 1142
Query 1048 TCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGTTTGAGGCTTCAAGAGTTTGATGAT 1107
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1143 TCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGTCTGAGGCTTCAAGAGTTTGATGAT 1202
Query 1108 CGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGGTCTCTCGCTGAATGCAAATCCTTT 1167
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1203 CGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGGTCTCTCGCTGAATGTAAATCTTTT 1262
Query 1168 TCTTCTTATCCTATTGATTGTGCATCCTTTGGCTGctctccacctagtccacc 1220
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1263 TCTTCTTATCCTATTGATTGTGCATCCTTCGGCTGCTCTCCACCTAGTCCACC 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5